Wall clock time and date at job start Sat Apr 11 2020 05:56:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47256 * 2 1 4 4 C 1.46907 * 110.99893 * 62.51941 * 3 2 1 5 5 C 1.50703 * 109.46841 * 66.04932 * 4 3 2 6 6 H 1.07998 * 120.00180 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99497 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00599 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99838 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46933 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47521 * 119.99555 * 9 7 5 12 12 H 1.48501 * 109.46929 * 240.00084 * 9 7 5 13 13 C 1.46896 * 110.99940 * 298.57086 * 3 2 1 14 14 C 1.50703 * 109.47182 * 288.81963 * 13 3 2 15 15 O 1.21292 * 119.99387 * 2.16026 * 14 13 3 16 16 N 1.34777 * 120.00461 * 182.16685 * 14 13 3 17 17 C 1.39920 * 119.99776 * 184.65502 * 16 14 13 18 18 C 1.38888 * 120.07369 * 323.00621 * 17 16 14 19 19 C 1.38098 * 119.92873 * 179.72757 * 18 17 16 20 20 C 1.38300 * 120.06724 * 0.57057 * 19 18 17 21 21 C 1.38257 * 120.14688 * 359.68143 * 20 19 18 22 22 S 1.76201 * 119.96762 * 180.02562 * 21 20 19 23 23 C 1.81394 * 104.45061 * 270.02377 * 22 21 20 24 24 O 1.42100 * 104.27540 * 26.09498 * 22 21 20 25 25 O 1.42105 * 104.27379 * 153.95244 * 22 21 20 26 26 C 1.38136 * 120.06751 * 0.04136 * 21 20 19 27 27 H 1.09000 * 109.47126 * 299.80357 * 1 2 3 28 28 H 1.08992 * 109.47376 * 59.81094 * 1 2 3 29 29 H 1.09004 * 109.47016 * 179.81169 * 1 2 3 30 30 H 1.09000 * 109.47318 * 240.00258 * 2 1 3 31 31 H 1.09000 * 109.47337 * 119.99831 * 2 1 3 32 32 H 1.08997 * 109.46901 * 186.04826 * 4 3 2 33 33 H 1.09003 * 109.46854 * 306.04912 * 4 3 2 34 34 H 0.96997 * 120.00732 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47362 * 48.81880 * 13 3 2 36 36 H 1.09003 * 109.47218 * 168.81873 * 13 3 2 37 37 H 0.96998 * 119.99620 * 4.64932 * 16 14 13 38 38 H 1.07998 * 120.03373 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.95942 * 180.25321 * 19 18 17 40 40 H 1.08001 * 119.92407 * 179.70707 * 20 19 18 41 41 H 1.09000 * 109.47055 * 59.99881 * 23 22 21 42 42 H 1.08999 * 109.47157 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.47247 * 300.00157 * 23 22 21 44 44 H 1.08001 * 120.03581 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5985 2.0923 1.2168 5 6 2.2712 1.4742 2.4153 6 1 2.9439 0.6392 2.2862 7 6 2.0269 1.9740 3.6769 8 7 1.2074 2.9904 3.8342 9 14 2.8612 1.2084 5.1626 10 1 3.7292 0.0877 4.7199 11 1 3.6874 2.2335 5.8494 12 1 1.8298 0.6948 6.0994 13 6 1.5768 2.0999 -1.2044 14 6 2.3222 1.5734 -2.4037 15 8 3.1131 0.6629 -2.2744 16 7 2.1102 2.1143 -3.6198 17 6 2.7276 1.5630 -4.7480 18 6 4.0208 1.0641 -4.6596 19 6 4.6252 0.5155 -5.7735 20 6 3.9486 0.4734 -6.9790 21 6 2.6632 0.9740 -7.0716 22 16 1.8052 0.9174 -8.6096 23 6 2.2306 2.4819 -9.4230 24 8 2.3922 -0.1783 -9.2981 25 8 0.4320 0.9025 -8.2444 26 6 2.0508 1.5189 -5.9596 27 1 -0.3633 0.5108 0.8917 28 1 -0.3634 0.5167 -0.8882 29 1 -0.3633 -1.0277 -0.0034 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8811 3.1424 1.1428 33 1 0.5168 2.0139 1.3265 34 1 1.0358 3.3423 4.7217 35 1 0.5069 1.9463 -1.3454 36 1 1.7789 3.1649 -1.0897 37 1 1.5295 2.8857 -3.7129 38 1 4.5515 1.1014 -3.7198 39 1 5.6292 0.1236 -5.7044 40 1 4.4253 0.0482 -7.8498 41 1 3.3104 2.5378 -9.5612 42 1 1.7374 2.5326 -10.3937 43 1 1.9001 3.3154 -8.8031 44 1 1.0469 1.9101 -6.0326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000081017958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:07 Heat of formation + Delta-G solvation = -57.203165 kcal Electronic energy + Delta-G solvation = -26932.864192 eV Core-core repulsion = 22978.508100 eV Total energy + Delta-G solvation = -3954.356092 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.63612 -38.81569 -37.44719 -36.76083 -36.27497 -34.79317 -32.62926 -31.58330 -30.58937 -29.94318 -29.48369 -28.03306 -25.35021 -23.76929 -23.23141 -22.75737 -20.99723 -19.49109 -19.25880 -18.33668 -17.13920 -16.63247 -16.54053 -16.28001 -16.10006 -15.96515 -15.71071 -15.06646 -14.70398 -14.42294 -14.19293 -13.89538 -13.76930 -13.69268 -13.62567 -13.24349 -12.88713 -12.54055 -12.42269 -12.38294 -12.30882 -11.97621 -11.82679 -11.62156 -11.51379 -11.22264 -11.14854 -10.96607 -10.74596 -10.64970 -10.53551 -10.04249 -10.01138 -9.62643 -9.44555 -9.15367 -8.47770 -8.44867 -7.27058 -6.06577 -4.06794 -0.32935 0.58614 0.95339 2.48221 2.66485 2.91250 3.24112 3.29771 3.37472 3.43464 3.61142 3.75158 4.31058 4.40537 4.41362 4.54979 4.72970 4.81903 4.92225 4.98705 5.14486 5.16061 5.29845 5.30818 5.41771 5.56399 5.61590 5.68199 5.83686 5.97168 5.99982 6.08267 6.11558 6.19471 6.43306 6.63885 6.71249 6.93256 7.17938 7.29499 7.33244 7.75979 7.99822 8.12187 8.23802 8.47885 9.01210 9.57437 11.04381 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.002094 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.615296 B =13368.311667 C =13652.442037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.057 3.943 3 N -0.517 5.517 4 C 0.190 3.810 5 C -0.503 4.503 6 H 0.065 0.935 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.285 1.285 13 C 0.032 3.968 14 C 0.516 3.484 15 O -0.497 6.497 16 N -0.686 5.686 17 C 0.139 3.861 18 C -0.065 4.065 19 C -0.120 4.120 20 C -0.045 4.045 21 C -0.643 4.643 22 S 2.502 3.498 23 C -0.650 4.650 24 O -0.938 6.938 25 O -0.937 6.937 26 C -0.057 4.057 27 H 0.069 0.931 28 H 0.040 0.960 29 H 0.049 0.951 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.002 0.998 34 H 0.261 0.739 35 H 0.065 0.935 36 H 0.100 0.900 37 H 0.411 0.589 38 H 0.149 0.851 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.757 1.959 -26.769 26.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.071 4.071 3 N -0.241 5.241 4 C 0.065 3.935 5 C -0.542 4.542 6 H 0.083 0.917 7 C -0.146 4.146 8 N -0.540 5.540 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.211 1.211 13 C -0.100 4.100 14 C 0.304 3.696 15 O -0.369 6.369 16 N -0.333 5.333 17 C 0.043 3.957 18 C -0.086 4.086 19 C -0.140 4.140 20 C -0.065 4.065 21 C -0.731 4.731 22 S 2.682 3.318 23 C -0.800 4.800 24 O -0.935 6.935 25 O -0.935 6.935 26 C -0.078 4.078 27 H 0.088 0.912 28 H 0.059 0.941 29 H 0.068 0.932 30 H 0.083 0.917 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.019 0.981 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.118 0.882 37 H 0.247 0.753 38 H 0.166 0.834 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 2.229 0.736 -26.702 26.805 hybrid contribution -0.305 0.784 1.320 1.565 sum 1.924 1.520 -25.382 25.500 Atomic orbital electron populations 1.22422 0.99676 1.01214 1.01595 1.22082 0.91527 0.90883 1.02602 1.62086 1.59099 1.02030 1.00864 1.19848 0.94696 0.93880 0.85057 1.21163 1.26369 1.16354 0.90273 0.91711 1.24965 0.95420 0.95162 0.99057 1.69951 1.36250 1.24896 1.22876 0.86443 0.79290 0.79259 0.82467 1.19616 1.21035 1.21133 1.21993 0.97320 1.00232 0.90430 1.21386 0.82526 0.82266 0.83424 1.90664 1.33674 1.28236 1.84314 1.43753 1.50044 1.33851 1.05665 1.17823 0.92057 0.98830 0.86989 1.21735 0.92655 0.94359 0.99802 1.21240 1.00725 0.99816 0.92204 1.20891 0.92088 0.94550 0.98965 1.30273 1.08373 1.14739 1.19683 1.05104 0.74761 0.77057 0.74912 1.30228 1.12988 1.22587 1.14192 1.93588 1.78639 1.47942 1.73346 1.93596 1.30839 1.86670 1.82357 1.20650 0.98740 0.97143 0.91306 0.91242 0.94071 0.93162 0.91671 0.89846 0.95328 0.98081 0.92988 0.91725 0.88209 0.75255 0.83372 0.84658 0.84161 0.84916 0.85051 0.84913 0.83881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.40 9.27 37.16 0.34 -3.05 16 2 C 0.06 1.15 5.57 -3.82 -0.02 1.13 16 3 N -0.52 -10.90 4.36 -237.51 -1.04 -11.94 16 4 C 0.19 4.70 4.51 -4.97 -0.02 4.67 16 5 C -0.50 -13.86 8.48 -34.44 -0.29 -14.15 16 6 H 0.06 1.81 7.11 -52.49 -0.37 1.44 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.90 -26.04 13.29 55.43 0.74 -25.30 16 9 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 13 C 0.03 0.52 5.31 -4.98 -0.03 0.49 16 14 C 0.52 7.90 7.43 -10.98 -0.08 7.82 16 15 O -0.50 -9.30 12.21 5.55 0.07 -9.23 16 16 N -0.69 -7.77 5.33 -9.86 -0.05 -7.82 16 17 C 0.14 1.61 6.26 -83.70 -0.52 1.09 16 18 C -0.07 -0.79 8.69 -39.39 -0.34 -1.13 16 19 C -0.12 -1.19 10.04 -39.61 -0.40 -1.58 16 20 C -0.05 -0.40 9.47 -39.55 -0.37 -0.78 16 21 C -0.64 -5.72 5.65 -39.61 -0.22 -5.95 16 22 S 2.50 18.24 5.80 -107.50 -0.62 17.61 16 23 C -0.65 -1.81 10.79 101.05 1.09 -0.72 16 24 O -0.94 -9.76 17.12 -57.54 -0.99 -10.75 16 25 O -0.94 -10.05 17.12 -57.54 -0.99 -11.04 16 26 C -0.06 -0.56 9.39 -39.39 -0.37 -0.93 16 27 H 0.07 1.39 6.34 -51.93 -0.33 1.06 16 28 H 0.04 0.66 6.20 -51.93 -0.32 0.34 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.06 1.29 6.25 -51.93 -0.32 0.96 16 31 H 0.08 1.83 6.79 -51.93 -0.35 1.48 16 32 H 0.03 0.75 7.87 -51.93 -0.41 0.34 16 33 H 0.00 0.04 6.08 -51.93 -0.32 -0.28 16 34 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 35 H 0.07 0.96 5.84 -51.93 -0.30 0.65 16 36 H 0.10 1.47 7.83 -51.93 -0.41 1.07 16 37 H 0.41 3.18 8.83 -40.82 -0.36 2.82 16 38 H 0.15 2.04 6.37 -52.49 -0.33 1.71 16 39 H 0.14 1.03 8.06 -52.49 -0.42 0.61 16 40 H 0.14 0.94 7.57 -52.49 -0.40 0.55 16 41 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 42 H 0.13 0.19 8.14 -51.92 -0.42 -0.24 16 43 H 0.13 0.20 8.14 -51.92 -0.42 -0.23 16 44 H 0.14 1.12 7.57 -52.49 -0.40 0.72 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -37.35 372.00 -9.50 -46.85 By element: Atomic # 1 Polarization: 7.02 SS G_CDS: -5.87 Total: 1.15 kcal Atomic # 6 Polarization: -10.31 SS G_CDS: -1.34 Total: -11.65 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.35 Total: -45.06 kcal Atomic # 8 Polarization: -29.12 SS G_CDS: -1.90 Total: -31.02 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 18.24 SS G_CDS: -0.62 Total: 17.61 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.35 -9.50 -46.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081017958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.353 kcal (2) G-P(sol) polarization free energy of solvation -37.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.504 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds