Wall clock time and date at job start Sat Apr 11 2020 05:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47256 * 2 1 4 4 C 1.46907 * 110.99893 * 62.51941 * 3 2 1 5 5 C 1.50703 * 109.46841 * 66.04932 * 4 3 2 6 6 H 1.07998 * 120.00180 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99497 * 180.02562 * 5 4 3 8 8 N 1.31508 * 120.00599 * 359.97438 * 7 5 4 9 9 Si 1.86807 * 119.99838 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46933 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47521 * 119.99555 * 9 7 5 12 12 H 1.48501 * 109.46929 * 240.00084 * 9 7 5 13 13 C 1.46896 * 110.99940 * 298.57086 * 3 2 1 14 14 C 1.50703 * 109.47182 * 288.81963 * 13 3 2 15 15 O 1.21292 * 119.99387 * 2.16026 * 14 13 3 16 16 N 1.34777 * 120.00461 * 182.16685 * 14 13 3 17 17 C 1.39920 * 119.99776 * 184.65502 * 16 14 13 18 18 C 1.38888 * 120.07369 * 323.00621 * 17 16 14 19 19 C 1.38098 * 119.92873 * 179.72757 * 18 17 16 20 20 C 1.38300 * 120.06724 * 0.57057 * 19 18 17 21 21 C 1.38257 * 120.14688 * 359.68143 * 20 19 18 22 22 S 1.76201 * 119.96762 * 180.02562 * 21 20 19 23 23 C 1.81394 * 104.45061 * 270.02377 * 22 21 20 24 24 O 1.42100 * 104.27540 * 26.09498 * 22 21 20 25 25 O 1.42105 * 104.27379 * 153.95244 * 22 21 20 26 26 C 1.38136 * 120.06751 * 0.04136 * 21 20 19 27 27 H 1.09000 * 109.47126 * 299.80357 * 1 2 3 28 28 H 1.08992 * 109.47376 * 59.81094 * 1 2 3 29 29 H 1.09004 * 109.47016 * 179.81169 * 1 2 3 30 30 H 1.09000 * 109.47318 * 240.00258 * 2 1 3 31 31 H 1.09000 * 109.47337 * 119.99831 * 2 1 3 32 32 H 1.08997 * 109.46901 * 186.04826 * 4 3 2 33 33 H 1.09003 * 109.46854 * 306.04912 * 4 3 2 34 34 H 0.96997 * 120.00732 * 180.02562 * 8 7 5 35 35 H 1.09001 * 109.47362 * 48.81880 * 13 3 2 36 36 H 1.09003 * 109.47218 * 168.81873 * 13 3 2 37 37 H 0.96998 * 119.99620 * 4.64932 * 16 14 13 38 38 H 1.07998 * 120.03373 * 359.97438 * 18 17 16 39 39 H 1.07998 * 119.95942 * 180.25321 * 19 18 17 40 40 H 1.08001 * 119.92407 * 179.70707 * 20 19 18 41 41 H 1.09000 * 109.47055 * 59.99881 * 23 22 21 42 42 H 1.08999 * 109.47157 * 179.97438 * 23 22 21 43 43 H 1.09006 * 109.47247 * 300.00157 * 23 22 21 44 44 H 1.08001 * 120.03581 * 179.97438 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5985 2.0923 1.2168 5 6 2.2712 1.4742 2.4153 6 1 2.9439 0.6392 2.2862 7 6 2.0269 1.9740 3.6769 8 7 1.2074 2.9904 3.8342 9 14 2.8612 1.2084 5.1626 10 1 3.7292 0.0877 4.7199 11 1 3.6874 2.2335 5.8494 12 1 1.8298 0.6948 6.0994 13 6 1.5768 2.0999 -1.2044 14 6 2.3222 1.5734 -2.4037 15 8 3.1131 0.6629 -2.2744 16 7 2.1102 2.1143 -3.6198 17 6 2.7276 1.5630 -4.7480 18 6 4.0208 1.0641 -4.6596 19 6 4.6252 0.5155 -5.7735 20 6 3.9486 0.4734 -6.9790 21 6 2.6632 0.9740 -7.0716 22 16 1.8052 0.9174 -8.6096 23 6 2.2306 2.4819 -9.4230 24 8 2.3922 -0.1783 -9.2981 25 8 0.4320 0.9025 -8.2444 26 6 2.0508 1.5189 -5.9596 27 1 -0.3633 0.5108 0.8917 28 1 -0.3634 0.5167 -0.8882 29 1 -0.3633 -1.0277 -0.0034 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 1.8811 3.1424 1.1428 33 1 0.5168 2.0139 1.3265 34 1 1.0358 3.3423 4.7217 35 1 0.5069 1.9463 -1.3454 36 1 1.7789 3.1649 -1.0897 37 1 1.5295 2.8857 -3.7129 38 1 4.5515 1.1014 -3.7198 39 1 5.6292 0.1236 -5.7044 40 1 4.4253 0.0482 -7.8498 41 1 3.3104 2.5378 -9.5612 42 1 1.7374 2.5326 -10.3937 43 1 1.9001 3.3154 -8.8031 44 1 1.0469 1.9101 -6.0326 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000081017958.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:06 Heat of formation + Delta-G solvation = -86.564910 kcal Electronic energy + Delta-G solvation = -26934.137413 eV Core-core repulsion = 22978.508100 eV Total energy + Delta-G solvation = -3955.629313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.68494 -39.86774 -38.28017 -38.11532 -36.95433 -35.85504 -34.71736 -32.34521 -31.73662 -30.93493 -30.21722 -29.63508 -26.98175 -25.01373 -24.59440 -23.72829 -22.20163 -20.99245 -19.97929 -19.09229 -18.49484 -18.07511 -17.40770 -17.25465 -17.11991 -16.88377 -16.79476 -16.45435 -16.12610 -15.84552 -15.31137 -15.11429 -14.77890 -14.59488 -14.22923 -14.10214 -13.89232 -13.87242 -13.47532 -13.34904 -13.16661 -13.11732 -13.06754 -12.91109 -12.72046 -12.67810 -12.60938 -12.53546 -12.20633 -11.95577 -11.76801 -11.56731 -11.45631 -11.34652 -10.74581 -10.59816 -10.29470 -9.33817 -8.94052 -8.19978 -6.27337 -0.84139 -0.19280 0.14636 1.39227 1.40803 1.51476 1.53593 1.82551 1.97997 2.41102 2.46893 3.06798 3.12994 3.22474 3.35845 3.68173 3.84047 4.04939 4.08594 4.17051 4.17470 4.22433 4.23359 4.38307 4.41079 4.48709 4.50212 4.62482 4.69622 4.88147 4.95357 4.98734 5.02408 5.14860 5.20878 5.28511 5.33555 5.35340 5.47499 5.66857 5.85658 6.04469 6.31116 6.32539 6.63267 6.87271 7.12571 7.41265 8.90570 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.028344 B = 0.002094 C = 0.002050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 987.615296 B =13368.311667 C =13652.442037 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.062 3.938 3 N -0.535 5.535 4 C 0.207 3.793 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.929 5.929 9 Si 0.961 3.039 10 H -0.271 1.271 11 H -0.278 1.278 12 H -0.278 1.278 13 C 0.031 3.969 14 C 0.521 3.479 15 O -0.538 6.538 16 N -0.666 5.666 17 C 0.117 3.883 18 C -0.089 4.089 19 C -0.124 4.124 20 C -0.045 4.045 21 C -0.644 4.644 22 S 2.508 3.492 23 C -0.622 4.622 24 O -0.975 6.975 25 O -0.977 6.977 26 C -0.056 4.056 27 H 0.043 0.957 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.010 0.990 33 H -0.012 1.012 34 H 0.264 0.736 35 H 0.085 0.915 36 H 0.113 0.887 37 H 0.429 0.571 38 H 0.124 0.876 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.154 0.846 43 H 0.154 0.846 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.688 2.715 -29.159 29.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.066 4.066 3 N -0.259 5.259 4 C 0.081 3.919 5 C -0.558 4.558 6 H 0.071 0.929 7 C -0.191 4.191 8 N -0.570 5.570 9 Si 0.786 3.214 10 H -0.195 1.195 11 H -0.203 1.203 12 H -0.203 1.203 13 C -0.100 4.100 14 C 0.309 3.691 15 O -0.413 6.413 16 N -0.314 5.314 17 C 0.022 3.978 18 C -0.109 4.109 19 C -0.143 4.143 20 C -0.064 4.064 21 C -0.729 4.729 22 S 2.691 3.309 23 C -0.776 4.776 24 O -0.972 6.972 25 O -0.975 6.975 26 C -0.077 4.077 27 H 0.063 0.937 28 H 0.081 0.919 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.074 0.926 32 H 0.028 0.972 33 H 0.006 0.994 34 H 0.073 0.927 35 H 0.103 0.897 36 H 0.131 0.869 37 H 0.269 0.731 38 H 0.142 0.858 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.174 0.826 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 2.140 1.477 -29.101 29.217 hybrid contribution -0.257 0.605 1.861 1.974 sum 1.883 2.082 -27.240 27.385 Atomic orbital electron populations 1.22291 0.97766 1.02427 1.01290 1.21967 0.93048 0.90195 1.01374 1.61881 1.60094 1.02547 1.01346 1.19475 0.93408 0.92876 0.86142 1.21430 1.26382 1.16189 0.91817 0.92922 1.25745 0.95992 0.95593 1.01784 1.70041 1.37300 1.25938 1.23700 0.85458 0.78406 0.78463 0.79037 1.19530 1.20318 1.20320 1.22053 0.98534 1.00476 0.88932 1.21088 0.81937 0.81849 0.84238 1.90658 1.35385 1.30160 1.85056 1.43407 1.49626 1.33885 1.04523 1.17968 0.92291 1.00067 0.87451 1.21680 0.93377 0.96138 0.99701 1.21471 1.01634 0.99303 0.91916 1.21222 0.92181 0.93757 0.99251 1.30617 1.08284 1.13601 1.20440 1.04894 0.73426 0.78544 0.74058 1.30023 1.14933 1.18054 1.14574 1.93541 1.78809 1.51495 1.73345 1.93545 1.32970 1.88046 1.82911 1.20858 0.99416 0.96813 0.90607 0.93746 0.91946 0.91252 0.91254 0.92585 0.97163 0.99445 0.92686 0.89726 0.86862 0.73147 0.85816 0.82928 0.81889 0.82556 0.82736 0.82723 0.82022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.33 9.27 71.98 0.67 -5.66 16 2 C 0.06 2.55 5.57 86.30 0.48 3.03 16 3 N -0.53 -23.07 4.36 -905.34 -3.95 -27.02 16 4 C 0.21 10.53 4.51 85.56 0.39 10.92 16 5 C -0.52 -29.43 8.48 25.60 0.22 -29.21 16 6 H 0.05 3.05 7.11 -2.91 -0.02 3.03 16 7 C 0.01 0.40 5.46 84.66 0.46 0.86 16 8 N -0.93 -54.46 13.29 21.45 0.28 -54.17 16 9 Si 0.96 44.65 29.54 68.60 2.03 46.68 16 10 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 13 C 0.03 1.00 5.31 85.56 0.45 1.46 16 14 C 0.52 15.94 7.43 87.66 0.65 16.59 16 15 O -0.54 -20.66 12.21 -3.07 -0.04 -20.70 16 16 N -0.67 -14.56 5.33 -303.50 -1.62 -16.18 16 17 C 0.12 2.65 6.26 38.15 0.24 2.89 16 18 C -0.09 -2.18 8.69 22.39 0.19 -1.99 16 19 C -0.12 -2.36 10.04 22.25 0.22 -2.14 16 20 C -0.04 -0.72 9.47 22.29 0.21 -0.51 16 21 C -0.64 -10.23 5.65 22.25 0.13 -10.11 16 22 S 2.51 31.02 5.80 -56.49 -0.33 30.69 16 23 C -0.62 -0.55 10.79 113.37 1.22 0.67 16 24 O -0.97 -18.78 17.12 -127.65 -2.19 -20.97 16 25 O -0.98 -19.55 17.12 -127.65 -2.19 -21.73 16 26 C -0.06 -1.00 9.39 22.39 0.21 -0.79 16 27 H 0.04 1.79 6.34 -2.39 -0.02 1.78 16 28 H 0.06 1.91 6.20 -2.39 -0.01 1.90 16 29 H 0.07 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.07 2.79 6.25 -2.39 -0.01 2.78 16 31 H 0.06 2.56 6.79 -2.39 -0.02 2.54 16 32 H 0.01 0.56 7.87 -2.39 -0.02 0.54 16 33 H -0.01 -0.64 6.08 -2.39 -0.01 -0.65 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.09 2.39 5.84 -2.39 -0.01 2.38 16 36 H 0.11 3.30 7.83 -2.39 -0.02 3.28 16 37 H 0.43 5.93 8.83 -92.71 -0.82 5.11 16 38 H 0.12 3.64 6.37 -2.91 -0.02 3.62 16 39 H 0.15 2.21 8.06 -2.91 -0.02 2.19 16 40 H 0.16 1.81 7.57 -2.91 -0.02 1.79 16 41 H 0.16 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.15 -0.37 8.14 -2.39 -0.02 -0.39 16 43 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.16 2.18 7.57 -2.91 -0.02 2.16 16 Total: -1.00 -83.54 372.00 -2.02 -85.57 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.22 Total: 11.82 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 5.75 Total: -13.99 kcal Atomic # 7 Polarization: -92.08 SS G_CDS: -5.28 Total: -97.36 kcal Atomic # 8 Polarization: -58.99 SS G_CDS: -4.41 Total: -63.40 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 31.02 SS G_CDS: -0.33 Total: 30.69 kcal Total: -83.54 -2.02 -85.57 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000081017958.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.000 kcal (2) G-P(sol) polarization free energy of solvation -83.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.024 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds