Wall clock time and date at job start Sat Apr 11 2020 05:56:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46743 * 2 1 4 4 S 1.65599 * 119.99799 * 164.99801 * 3 2 1 5 5 O 1.42095 * 106.40417 * 311.45940 * 4 3 2 6 6 O 1.42102 * 106.40338 * 178.53854 * 4 3 2 7 7 C 1.76201 * 107.21748 * 65.00303 * 4 3 2 8 8 C 1.38387 * 119.92618 * 269.97979 * 7 4 3 9 9 C 1.38335 * 120.29619 * 180.02562 * 8 7 4 10 10 C 1.37986 * 120.14103 * 359.69567 * 9 8 7 11 11 C 1.39554 * 119.85182 * 0.57571 * 10 9 8 12 12 C 1.47848 * 120.14566 * 179.72649 * 11 10 9 13 13 O 1.21550 * 119.99966 * 202.57549 * 12 11 10 14 14 N 1.34780 * 119.99723 * 22.56882 * 12 11 10 15 15 C 1.46497 * 120.00028 * 3.85670 * 14 12 11 16 16 C 1.53005 * 109.46863 * 255.00992 * 15 14 12 17 17 C 1.46503 * 119.99770 * 183.84498 * 14 12 11 18 18 C 1.50691 * 109.47125 * 270.00429 * 17 14 12 19 19 H 1.08001 * 120.00567 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99820 * 180.02562 * 18 17 14 21 21 N 1.31519 * 119.99812 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00371 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46791 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47104 * 119.99927 * 22 20 18 25 25 H 1.48497 * 109.47433 * 240.00307 * 22 20 18 26 26 C 1.37936 * 119.92959 * 89.99791 * 7 4 3 27 27 H 1.09006 * 109.47202 * 59.99969 * 1 2 3 28 28 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47054 * 299.99939 * 1 2 3 30 30 H 1.08997 * 109.47054 * 240.00061 * 2 1 3 31 31 H 1.08993 * 109.47079 * 119.99790 * 2 1 3 32 32 H 0.97004 * 120.00209 * 344.99926 * 3 2 1 33 33 H 1.07998 * 119.85244 * 359.97438 * 8 7 4 34 34 H 1.07995 * 119.92904 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.07130 * 180.27763 * 10 9 8 36 36 H 1.09001 * 109.47666 * 15.00578 * 15 14 12 37 37 H 1.08991 * 109.47555 * 135.01101 * 15 14 12 38 38 H 1.09004 * 109.47532 * 179.97438 * 16 15 14 39 39 H 1.08994 * 109.46867 * 299.99860 * 16 15 14 40 40 H 1.08999 * 109.47250 * 59.99704 * 16 15 14 41 41 H 1.09004 * 109.46433 * 150.00522 * 17 14 12 42 42 H 1.08994 * 109.46895 * 30.01080 * 17 14 12 43 43 H 0.96998 * 119.99618 * 179.97438 * 21 20 18 44 44 H 1.07992 * 120.07571 * 0.02562 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6003 1.7002 0.3712 5 8 3.8848 0.9834 1.5647 6 8 3.7650 3.1065 0.2513 7 6 4.5894 0.9738 -0.8932 8 6 5.0348 -0.3294 -0.7582 9 6 5.8122 -0.9071 -1.7460 10 6 6.1433 -0.1881 -2.8762 11 6 5.7022 1.1285 -3.0160 12 6 6.0582 1.9069 -4.2215 13 8 6.0482 3.1218 -4.1854 14 7 6.3940 1.2692 -5.3605 15 6 6.3247 -0.1925 -5.4293 16 6 7.7391 -0.7734 -5.3712 17 6 6.8280 2.0379 -6.5297 18 6 5.6300 2.3860 -7.3749 19 1 4.6438 2.0670 -7.0714 20 6 5.7929 3.1118 -8.5358 21 7 6.9938 3.4998 -8.9057 22 14 4.3080 3.5428 -9.5840 23 1 3.0809 2.9930 -8.9538 24 1 4.1898 5.0192 -9.6915 25 1 4.4728 2.9594 -10.9396 26 6 4.9183 1.7056 -2.0152 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.4149 2.1090 -0.2174 33 1 4.7750 -0.8978 0.1226 34 1 6.1569 -1.9244 -1.6343 35 1 6.7465 -0.6417 -3.6487 36 1 5.7427 -0.5688 -4.5880 37 1 5.8478 -0.4902 -6.3631 38 1 7.6876 -1.8610 -5.4220 39 1 8.3211 -0.3972 -6.2125 40 1 8.2160 -0.4758 -4.4374 41 1 7.5265 1.4420 -7.1172 42 1 7.3190 2.9536 -6.2005 43 1 7.1084 4.0101 -9.7226 44 1 4.5708 2.7228 -2.1191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103207264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:42 Heat of formation + Delta-G solvation = -52.649167 kcal Electronic energy + Delta-G solvation = -27757.337727 eV Core-core repulsion = 23803.179111 eV Total energy + Delta-G solvation = -3954.158616 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.33779 -38.05707 -37.41552 -36.18829 -36.00427 -35.80552 -33.08304 -31.55454 -31.24399 -30.24736 -30.06754 -27.33156 -24.17815 -23.73323 -23.25368 -22.94706 -22.08082 -20.04389 -19.26608 -17.92294 -17.45601 -16.96055 -16.51975 -16.48361 -15.94220 -15.78655 -15.12704 -15.01644 -14.64841 -14.44043 -14.18951 -13.98070 -13.77918 -13.49697 -13.32391 -13.00938 -12.39800 -12.30316 -12.28463 -12.23950 -12.15995 -12.03442 -11.94337 -11.82762 -11.75896 -11.59294 -11.26101 -10.99165 -10.94593 -10.73332 -10.62702 -10.18941 -9.86139 -9.69235 -9.43994 -9.19810 -9.00219 -8.48186 -7.79535 -6.09184 -4.13835 0.18330 0.57824 0.97052 2.70282 3.05189 3.26797 3.34727 3.37862 3.52279 3.68591 3.89528 4.16997 4.40870 4.54392 4.61742 4.64445 4.73927 4.79238 4.90681 4.97072 5.15031 5.20105 5.25042 5.26333 5.39634 5.42197 5.52222 5.57512 5.58939 5.68084 5.76918 5.78898 5.87125 6.01022 6.10323 6.14836 6.38070 6.57917 6.64679 6.97787 7.35322 7.42578 7.86663 8.16792 8.25723 8.80537 8.95560 9.51225 10.99093 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.003172 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.470648 B = 8826.489068 C = 9630.668863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.110 3.890 3 N -1.118 6.118 4 S 2.699 3.301 5 O -0.959 6.959 6 O -0.953 6.953 7 C -0.688 4.688 8 C -0.012 4.012 9 C -0.150 4.150 10 C -0.070 4.070 11 C -0.137 4.137 12 C 0.542 3.458 13 O -0.528 6.528 14 N -0.586 5.586 15 C 0.074 3.926 16 C -0.180 4.180 17 C 0.246 3.754 18 C -0.527 4.527 19 H 0.058 0.942 20 C 0.061 3.939 21 N -0.894 5.894 22 Si 0.899 3.101 23 H -0.274 1.274 24 H -0.282 1.282 25 H -0.283 1.283 26 C 0.034 3.966 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.420 0.580 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.173 0.827 36 H 0.091 0.909 37 H 0.081 0.919 38 H 0.065 0.935 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.036 0.964 42 H 0.045 0.955 43 H 0.263 0.737 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.179 -14.436 16.904 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.016 4.016 3 N -0.879 5.879 4 S 2.788 3.212 5 O -0.949 6.949 6 O -0.943 6.943 7 C -0.775 4.775 8 C -0.031 4.031 9 C -0.169 4.169 10 C -0.088 4.088 11 C -0.141 4.141 12 C 0.328 3.672 13 O -0.405 6.405 14 N -0.317 5.317 15 C -0.049 4.049 16 C -0.238 4.238 17 C 0.128 3.872 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.141 4.141 21 N -0.533 5.533 22 Si 0.727 3.273 23 H -0.198 1.198 24 H -0.208 1.208 25 H -0.210 1.210 26 C 0.014 3.986 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.083 0.917 30 H 0.084 0.916 31 H 0.098 0.902 32 H 0.255 0.745 33 H 0.158 0.842 34 H 0.155 0.845 35 H 0.190 0.810 36 H 0.108 0.892 37 H 0.099 0.901 38 H 0.084 0.916 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.073 0.927 44 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -7.652 -13.384 17.494 23.318 hybrid contribution -0.826 0.099 -1.581 1.786 sum -8.478 -13.285 15.913 22.396 Atomic orbital electron populations 1.21961 0.93952 1.03048 1.02921 1.21295 0.96623 0.81451 1.02223 1.55585 1.28774 1.14923 1.88639 1.01747 0.72336 0.73324 0.73767 1.93573 1.83950 1.74731 1.42610 1.93632 1.85001 1.28894 1.86768 1.30828 1.21983 1.06626 1.18074 1.21044 0.92265 0.92111 0.97701 1.21277 1.00551 1.00971 0.94098 1.23042 0.95506 0.93036 0.97173 1.20452 1.01602 0.95122 0.96964 1.18088 0.78962 0.87421 0.82715 1.90787 1.52479 1.13181 1.84067 1.48160 1.64250 1.06104 1.13212 1.22268 0.97021 0.81810 1.03805 1.22308 0.97917 1.00648 1.02943 1.19336 0.95596 0.91631 0.80683 1.21439 0.93766 1.34887 1.06464 0.92369 1.24935 0.96112 0.95459 0.97576 1.69938 1.21257 1.37883 1.24217 0.86427 0.82693 0.78367 0.79834 1.19831 1.20807 1.20952 1.21027 0.89952 0.98887 0.88780 0.91736 0.90933 0.91746 0.91577 0.90160 0.74526 0.84197 0.84534 0.81036 0.89152 0.90098 0.91561 0.90809 0.92309 0.94615 0.93726 0.92709 0.83172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.80 10.05 37.16 0.37 -0.43 16 2 C 0.11 0.71 6.94 -4.04 -0.03 0.68 16 3 N -1.12 -9.18 6.00 -10.61 -0.06 -9.24 16 4 S 2.70 31.24 5.74 -107.50 -0.62 30.62 16 5 O -0.96 -12.51 16.74 -57.17 -0.96 -13.47 16 6 O -0.95 -14.43 17.27 -57.17 -0.99 -15.42 16 7 C -0.69 -8.55 5.94 -39.64 -0.24 -8.79 16 8 C -0.01 -0.12 9.52 -39.49 -0.38 -0.50 16 9 C -0.15 -1.49 10.03 -39.64 -0.40 -1.89 16 10 C -0.07 -0.88 7.52 -39.18 -0.29 -1.17 16 11 C -0.14 -2.27 5.61 -104.97 -0.59 -2.86 16 12 C 0.54 11.58 7.52 -12.33 -0.09 11.49 16 13 O -0.53 -13.63 16.19 5.32 0.09 -13.55 16 14 N -0.59 -12.19 2.49 -176.18 -0.44 -12.62 16 15 C 0.07 1.13 5.59 -4.04 -0.02 1.11 16 16 C -0.18 -2.23 9.04 37.16 0.34 -1.89 16 17 C 0.25 6.31 5.08 -5.20 -0.03 6.28 16 18 C -0.53 -14.76 9.39 -34.44 -0.32 -15.09 16 19 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 20 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 22 Si 0.90 21.70 29.54 -169.99 -5.02 16.67 16 23 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.43 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 26 C 0.03 0.52 9.06 -39.18 -0.36 0.17 16 27 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.48 7.75 -51.93 -0.40 0.08 16 32 H 0.42 2.83 8.65 -34.47 -0.30 2.54 16 33 H 0.14 1.08 7.60 -52.49 -0.40 0.69 16 34 H 0.14 0.88 8.06 -52.49 -0.42 0.46 16 35 H 0.17 1.92 2.30 -52.49 -0.12 1.80 16 36 H 0.09 1.15 4.04 -52.39 -0.21 0.94 16 37 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.07 1.05 7.43 -51.93 -0.39 0.66 16 40 H 0.06 0.69 7.02 -51.93 -0.36 0.33 16 41 H 0.04 0.91 7.32 -51.93 -0.38 0.53 16 42 H 0.04 1.30 7.48 -51.93 -0.39 0.91 16 43 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 44 H 0.15 2.48 7.37 -52.49 -0.39 2.10 16 LS Contribution 375.32 15.07 5.66 5.66 Total: -1.00 -37.50 375.32 -9.58 -47.07 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -5.84 Total: 1.04 kcal Atomic # 6 Polarization: -9.11 SS G_CDS: -2.13 Total: -11.24 kcal Atomic # 7 Polarization: -47.63 SS G_CDS: 0.23 Total: -47.40 kcal Atomic # 8 Polarization: -40.57 SS G_CDS: -1.86 Total: -42.43 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: 31.24 SS G_CDS: -0.62 Total: 30.62 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -37.50 -9.58 -47.07 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.577 kcal (2) G-P(sol) polarization free energy of solvation -37.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds