Wall clock time and date at job start Sat Apr 11 2020 05:56:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46498 * 109.46743 * 2 1 4 4 S 1.65599 * 119.99799 * 164.99801 * 3 2 1 5 5 O 1.42095 * 106.40417 * 311.45940 * 4 3 2 6 6 O 1.42102 * 106.40338 * 178.53854 * 4 3 2 7 7 C 1.76201 * 107.21748 * 65.00303 * 4 3 2 8 8 C 1.38387 * 119.92618 * 269.97979 * 7 4 3 9 9 C 1.38335 * 120.29619 * 180.02562 * 8 7 4 10 10 C 1.37986 * 120.14103 * 359.69567 * 9 8 7 11 11 C 1.39554 * 119.85182 * 0.57571 * 10 9 8 12 12 C 1.47848 * 120.14566 * 179.72649 * 11 10 9 13 13 O 1.21550 * 119.99966 * 202.57549 * 12 11 10 14 14 N 1.34780 * 119.99723 * 22.56882 * 12 11 10 15 15 C 1.46497 * 120.00028 * 3.85670 * 14 12 11 16 16 C 1.53005 * 109.46863 * 255.00992 * 15 14 12 17 17 C 1.46503 * 119.99770 * 183.84498 * 14 12 11 18 18 C 1.50691 * 109.47125 * 270.00429 * 17 14 12 19 19 H 1.08001 * 120.00567 * 0.02562 * 18 17 14 20 20 C 1.37881 * 119.99820 * 180.02562 * 18 17 14 21 21 N 1.31519 * 119.99812 * 0.02562 * 20 18 17 22 22 Si 1.86797 * 120.00371 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.46791 * 0.02562 * 22 20 18 24 24 H 1.48497 * 109.47104 * 119.99927 * 22 20 18 25 25 H 1.48497 * 109.47433 * 240.00307 * 22 20 18 26 26 C 1.37936 * 119.92959 * 89.99791 * 7 4 3 27 27 H 1.09006 * 109.47202 * 59.99969 * 1 2 3 28 28 H 1.08999 * 109.47031 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47054 * 299.99939 * 1 2 3 30 30 H 1.08997 * 109.47054 * 240.00061 * 2 1 3 31 31 H 1.08993 * 109.47079 * 119.99790 * 2 1 3 32 32 H 0.97004 * 120.00209 * 344.99926 * 3 2 1 33 33 H 1.07998 * 119.85244 * 359.97438 * 8 7 4 34 34 H 1.07995 * 119.92904 * 179.97438 * 9 8 7 35 35 H 1.08001 * 120.07130 * 180.27763 * 10 9 8 36 36 H 1.09001 * 109.47666 * 15.00578 * 15 14 12 37 37 H 1.08991 * 109.47555 * 135.01101 * 15 14 12 38 38 H 1.09004 * 109.47532 * 179.97438 * 16 15 14 39 39 H 1.08994 * 109.46867 * 299.99860 * 16 15 14 40 40 H 1.08999 * 109.47250 * 59.99704 * 16 15 14 41 41 H 1.09004 * 109.46433 * 150.00522 * 17 14 12 42 42 H 1.08994 * 109.46895 * 30.01080 * 17 14 12 43 43 H 0.96998 * 119.99618 * 179.97438 * 21 20 18 44 44 H 1.07992 * 120.07571 * 0.02562 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6003 1.7002 0.3712 5 8 3.8848 0.9834 1.5647 6 8 3.7650 3.1065 0.2513 7 6 4.5894 0.9738 -0.8932 8 6 5.0348 -0.3294 -0.7582 9 6 5.8122 -0.9071 -1.7460 10 6 6.1433 -0.1881 -2.8762 11 6 5.7022 1.1285 -3.0160 12 6 6.0582 1.9069 -4.2215 13 8 6.0482 3.1218 -4.1854 14 7 6.3940 1.2692 -5.3605 15 6 6.3247 -0.1925 -5.4293 16 6 7.7391 -0.7734 -5.3712 17 6 6.8280 2.0379 -6.5297 18 6 5.6300 2.3860 -7.3749 19 1 4.6438 2.0670 -7.0714 20 6 5.7929 3.1118 -8.5358 21 7 6.9938 3.4998 -8.9057 22 14 4.3080 3.5428 -9.5840 23 1 3.0809 2.9930 -8.9538 24 1 4.1898 5.0192 -9.6915 25 1 4.4728 2.9594 -10.9396 26 6 4.9183 1.7056 -2.0152 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.4149 2.1090 -0.2174 33 1 4.7750 -0.8978 0.1226 34 1 6.1569 -1.9244 -1.6343 35 1 6.7465 -0.6417 -3.6487 36 1 5.7427 -0.5688 -4.5880 37 1 5.8478 -0.4902 -6.3631 38 1 7.6876 -1.8610 -5.4220 39 1 8.3211 -0.3972 -6.2125 40 1 8.2160 -0.4758 -4.4374 41 1 7.5265 1.4420 -7.1172 42 1 7.3190 2.9536 -6.2005 43 1 7.1084 4.0101 -9.7226 44 1 4.5708 2.7228 -2.1191 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103207264.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:41 Heat of formation + Delta-G solvation = -81.415886 kcal Electronic energy + Delta-G solvation = -27758.585145 eV Core-core repulsion = 23803.179111 eV Total energy + Delta-G solvation = -3955.406034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.67394 -39.38280 -38.43907 -37.40937 -37.04691 -36.77575 -35.09449 -32.92546 -32.32847 -31.52293 -30.59141 -29.24691 -25.80424 -24.91746 -24.22711 -23.75528 -23.43616 -21.17002 -20.39096 -19.10156 -18.65180 -18.45241 -18.07014 -17.42917 -17.16496 -17.11454 -16.51980 -16.08183 -15.85697 -15.64813 -15.39116 -15.14000 -14.96754 -14.62628 -14.51095 -14.16314 -13.89557 -13.64234 -13.36366 -13.32652 -13.26876 -13.13341 -12.94231 -12.86978 -12.73244 -12.67992 -12.57356 -12.46085 -12.40443 -12.25295 -12.05099 -11.75327 -11.73169 -10.89300 -10.68184 -10.47420 -10.35253 -10.19568 -9.55788 -8.26653 -6.41208 -0.73359 -0.43360 -0.10489 1.33335 1.36557 1.47786 1.65970 2.01376 2.12204 2.37566 2.48298 2.71272 3.03237 3.19711 3.46270 3.72597 3.79148 3.95985 4.05517 4.11156 4.23943 4.25467 4.32151 4.39439 4.51246 4.53021 4.68153 4.71349 4.79015 4.90277 4.92070 5.00090 5.04313 5.12501 5.12819 5.16821 5.16880 5.37263 5.38705 5.50624 5.65464 5.77038 6.00963 6.03467 6.59173 6.67964 7.18272 7.33611 8.80974 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013397 B = 0.003172 C = 0.002907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2089.470648 B = 8826.489068 C = 9630.668863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -1.109 6.109 4 S 2.719 3.281 5 O -0.969 6.969 6 O -0.997 6.997 7 C -0.686 4.686 8 C 0.000 4.000 9 C -0.128 4.128 10 C -0.066 4.066 11 C -0.163 4.163 12 C 0.531 3.469 13 O -0.594 6.594 14 N -0.590 5.590 15 C 0.065 3.935 16 C -0.174 4.174 17 C 0.262 3.738 18 C -0.545 4.545 19 H 0.051 0.949 20 C 0.009 3.991 21 N -0.927 5.927 22 Si 0.968 3.032 23 H -0.268 1.268 24 H -0.282 1.282 25 H -0.266 1.266 26 C 0.013 3.987 27 H 0.061 0.939 28 H 0.089 0.911 29 H 0.064 0.936 30 H 0.077 0.923 31 H 0.090 0.910 32 H 0.426 0.574 33 H 0.178 0.822 34 H 0.190 0.810 35 H 0.188 0.812 36 H 0.125 0.875 37 H 0.074 0.926 38 H 0.112 0.888 39 H 0.047 0.953 40 H 0.067 0.933 41 H 0.033 0.967 42 H -0.005 1.005 43 H 0.268 0.732 44 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.532 -18.676 18.204 27.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.027 4.027 3 N -0.873 5.873 4 S 2.808 3.192 5 O -0.959 6.959 6 O -0.987 6.987 7 C -0.773 4.773 8 C -0.019 4.019 9 C -0.146 4.146 10 C -0.084 4.084 11 C -0.167 4.167 12 C 0.321 3.679 13 O -0.476 6.476 14 N -0.320 5.320 15 C -0.056 4.056 16 C -0.231 4.231 17 C 0.141 3.859 18 C -0.583 4.583 19 H 0.069 0.931 20 C -0.190 4.190 21 N -0.566 5.566 22 Si 0.793 3.207 23 H -0.192 1.192 24 H -0.208 1.208 25 H -0.190 1.190 26 C -0.008 4.008 27 H 0.080 0.920 28 H 0.107 0.893 29 H 0.083 0.917 30 H 0.096 0.904 31 H 0.108 0.892 32 H 0.263 0.737 33 H 0.196 0.804 34 H 0.208 0.792 35 H 0.204 0.796 36 H 0.142 0.858 37 H 0.092 0.908 38 H 0.131 0.869 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.051 0.949 42 H 0.013 0.987 43 H 0.077 0.923 44 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -9.003 -17.686 18.798 27.335 hybrid contribution -0.429 1.330 -1.884 2.346 sum -9.432 -16.356 16.914 25.348 Atomic orbital electron populations 1.21977 0.92845 1.04117 1.02867 1.21617 0.97646 0.80117 1.03282 1.55368 1.27248 1.16340 1.88362 1.01000 0.72818 0.72053 0.73336 1.93552 1.84617 1.74643 1.43062 1.93576 1.85976 1.31850 1.87294 1.30884 1.22141 1.07589 1.16660 1.21634 0.90507 0.90963 0.98832 1.21832 0.98295 1.02635 0.91854 1.23180 0.95169 0.91132 0.98910 1.20058 1.04513 0.96831 0.95273 1.18953 0.77630 0.87175 0.84153 1.90728 1.55317 1.16218 1.85381 1.48159 1.63651 1.08436 1.11722 1.22713 0.99672 0.78239 1.04973 1.22275 0.95261 1.03260 1.02329 1.18780 0.94699 0.90400 0.82029 1.21698 0.94012 1.35432 1.07175 0.93074 1.25853 0.99204 0.95093 0.98891 1.70051 1.23360 1.38367 1.24858 0.85357 0.78942 0.77891 0.78547 1.19238 1.20836 1.19042 1.20836 0.91320 0.98363 0.90270 0.91983 0.89255 0.91696 0.90440 0.89178 0.73721 0.80447 0.79238 0.79561 0.85828 0.90782 0.86899 0.93347 0.91439 0.94881 0.98659 0.92310 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.19 10.05 71.98 0.72 -0.47 16 2 C 0.10 0.99 6.94 86.38 0.60 1.59 16 3 N -1.11 -16.70 6.00 -187.50 -1.12 -17.83 16 4 S 2.72 60.75 5.74 -56.49 -0.32 60.43 16 5 O -0.97 -23.18 16.74 -128.00 -2.14 -25.33 16 6 O -1.00 -31.43 17.27 -128.00 -2.21 -33.64 16 7 C -0.69 -16.03 5.94 22.23 0.13 -15.90 16 8 C 0.00 0.00 9.52 22.33 0.21 0.21 16 9 C -0.13 -1.82 10.03 22.23 0.22 -1.60 16 10 C -0.07 -1.46 7.52 22.53 0.17 -1.29 16 11 C -0.16 -5.44 5.61 -20.09 -0.11 -5.55 16 12 C 0.53 24.18 7.52 86.79 0.65 24.84 16 13 O -0.59 -33.67 16.19 -3.87 -0.06 -33.73 16 14 N -0.59 -25.67 2.49 -829.59 -2.07 -27.74 16 15 C 0.07 1.91 5.59 86.38 0.48 2.40 16 16 C -0.17 -3.92 9.04 71.98 0.65 -3.27 16 17 C 0.26 14.32 5.08 85.63 0.43 14.76 16 18 C -0.54 -31.93 9.39 25.60 0.24 -31.69 16 19 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 20 C 0.01 0.51 5.46 84.65 0.46 0.97 16 21 N -0.93 -56.37 13.29 21.45 0.28 -56.08 16 22 Si 0.97 45.34 29.54 68.60 2.03 47.37 16 23 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 24 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 C 0.01 0.40 9.06 22.53 0.20 0.61 16 27 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 28 H 0.09 0.40 8.14 -2.39 -0.02 0.38 16 29 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.08 0.62 8.14 -2.39 -0.02 0.60 16 31 H 0.09 0.75 7.75 -2.39 -0.02 0.74 16 32 H 0.43 5.50 8.65 -96.74 -0.84 4.66 16 33 H 0.18 1.63 7.60 -2.91 -0.02 1.60 16 34 H 0.19 0.84 8.06 -2.91 -0.02 0.82 16 35 H 0.19 3.47 2.30 -2.91 -0.01 3.46 16 36 H 0.12 2.82 4.04 -2.82 -0.01 2.80 16 37 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 38 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 39 H 0.05 1.35 7.43 -2.39 -0.02 1.34 16 40 H 0.07 1.42 7.02 -2.39 -0.02 1.40 16 41 H 0.03 1.80 7.32 -2.38 -0.02 1.78 16 42 H 0.00 -0.30 7.48 -2.39 -0.02 -0.32 16 43 H 0.27 15.20 8.31 -92.71 -0.77 14.43 16 44 H 0.12 4.50 7.37 -2.91 -0.02 4.47 16 Total: -1.00 -89.62 375.32 -0.35 -89.97 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: 0.20 Total: 11.00 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 5.08 Total: -14.40 kcal Atomic # 7 Polarization: -98.74 SS G_CDS: -2.91 Total: -101.65 kcal Atomic # 8 Polarization: -88.29 SS G_CDS: -4.42 Total: -92.70 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Atomic # 16 Polarization: 60.75 SS G_CDS: -0.32 Total: 60.43 kcal Total: -89.62 -0.35 -89.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103207264.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.550 kcal (2) G-P(sol) polarization free energy of solvation -89.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds