Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47437 * 2 1 4 4 S 1.65593 * 120.00348 * 164.99807 * 3 2 1 5 5 O 1.42102 * 106.40236 * 311.46074 * 4 3 2 6 6 O 1.42097 * 106.40442 * 178.54223 * 4 3 2 7 7 C 1.76202 * 107.21997 * 65.00296 * 4 3 2 8 8 C 1.38356 * 119.85392 * 89.99979 * 7 4 3 9 9 C 1.37956 * 120.14468 * 179.97438 * 8 7 4 10 10 C 1.39581 * 119.85166 * 0.27926 * 9 8 7 11 11 C 1.47842 * 120.14502 * 179.72291 * 10 9 8 12 12 O 1.21554 * 120.00380 * 140.80905 * 11 10 9 13 13 N 1.34783 * 120.00065 * 320.81468 * 11 10 9 14 14 C 1.46495 * 119.99759 * 4.86542 * 13 11 10 15 15 C 1.46497 * 119.99947 * 184.86673 * 13 11 10 16 16 H 1.08996 * 109.47297 * 359.97438 * 15 13 11 17 17 C 1.52995 * 109.47057 * 239.99742 * 15 13 11 18 18 C 1.50705 * 109.47128 * 119.99728 * 15 13 11 19 19 H 1.07997 * 119.99497 * 0.02562 * 18 15 13 20 20 C 1.37875 * 120.00110 * 179.97438 * 18 15 13 21 21 N 1.31513 * 119.99874 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99790 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47356 * 60.00009 * 22 20 18 24 24 H 1.48506 * 109.46579 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47058 * 299.99767 * 22 20 18 26 26 C 1.39574 * 119.71143 * 359.46439 * 10 9 8 27 27 C 1.37956 * 119.85237 * 0.51471 * 26 10 9 28 28 H 1.09001 * 109.47076 * 300.00227 * 1 2 3 29 29 H 1.09005 * 109.46861 * 59.99621 * 1 2 3 30 30 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47483 * 240.00067 * 2 1 3 32 32 H 1.08999 * 109.47504 * 120.00193 * 2 1 3 33 33 H 0.97008 * 119.99659 * 345.00133 * 3 2 1 34 34 H 1.08000 * 119.92685 * 359.97438 * 8 7 4 35 35 H 1.07997 * 120.07779 * 180.02562 * 9 8 7 36 36 H 1.09007 * 109.47329 * 85.55381 * 14 13 11 37 37 H 1.08997 * 109.47120 * 205.55353 * 14 13 11 38 38 H 1.09002 * 109.47398 * 325.55393 * 14 13 11 39 39 H 1.08998 * 109.47682 * 300.00068 * 17 15 13 40 40 H 1.09004 * 109.47587 * 60.00190 * 17 15 13 41 41 H 1.09006 * 109.47457 * 180.02562 * 17 15 13 42 42 H 0.97001 * 119.99688 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.07346 * 180.23503 * 26 10 9 44 44 H 1.08005 * 119.93037 * 179.74123 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6003 1.7001 0.3712 5 8 3.8848 0.9833 1.5647 6 8 3.7651 3.1064 0.2513 7 6 4.5895 0.9737 -0.8932 8 6 4.9186 1.7091 -2.0180 9 6 5.6931 1.1465 -3.0114 10 6 6.1400 -0.1695 -2.8825 11 6 6.9652 -0.7809 -3.9459 12 8 7.8932 -1.5090 -3.6523 13 7 6.6888 -0.5307 -5.2412 14 6 5.6400 0.4293 -5.5941 15 6 7.4371 -1.2189 -6.2960 16 1 8.1694 -1.8881 -5.8445 17 6 8.1579 -0.1872 -7.1660 18 6 6.4847 -2.0173 -7.1485 19 1 5.4277 -2.0122 -6.9268 20 6 6.9626 -2.7533 -8.2118 21 7 8.2497 -2.7591 -8.4819 22 14 5.7819 -3.7424 -9.2688 23 1 4.7846 -2.8299 -9.8836 24 1 6.5405 -4.4400 -10.3380 25 1 5.0823 -4.7440 -8.4249 26 6 5.8089 -0.9040 -1.7428 27 6 5.0341 -0.3294 -0.7566 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 1.4150 2.1090 -0.2174 34 1 4.5683 2.7258 -2.1185 35 1 5.9497 1.7217 -3.8887 36 1 6.0579 1.4360 -5.6062 37 1 5.2440 0.1884 -6.5806 38 1 4.8376 0.3778 -4.8581 39 1 7.4259 0.4824 -7.6175 40 1 8.8468 0.3903 -6.5495 41 1 8.7143 -0.6991 -7.9512 42 1 8.5858 -3.2766 -9.2303 43 1 6.1547 -1.9215 -1.6353 44 1 4.7736 -0.8980 0.1239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103443493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -74.602066 kcal Electronic energy + Delta-G solvation = -27513.624402 eV Core-core repulsion = 23558.513837 eV Total energy + Delta-G solvation = -3955.110565 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.15163 -38.18688 -37.51371 -36.24978 -36.08806 -35.55710 -33.19642 -31.59209 -31.25004 -30.12429 -29.22251 -26.50794 -25.32537 -24.36229 -23.35056 -22.86419 -21.28113 -19.87961 -19.08115 -18.25657 -17.56527 -17.04571 -16.61856 -16.34473 -15.85417 -15.43777 -15.20342 -14.90828 -14.77776 -14.61304 -14.22926 -13.73894 -13.63426 -13.51205 -13.06818 -12.80500 -12.59462 -12.53563 -12.37833 -12.36052 -12.26512 -12.08521 -11.84445 -11.72316 -11.69433 -11.26663 -11.15545 -11.04239 -10.92319 -10.80425 -10.36356 -10.26193 -9.92680 -9.50299 -9.33518 -9.18680 -9.14552 -8.52036 -7.77988 -6.16350 -4.25463 0.08522 0.45235 1.14863 2.64412 2.99090 3.21529 3.27340 3.27918 3.43032 3.59029 3.80575 4.07228 4.31028 4.50805 4.59588 4.68312 4.71250 4.78622 4.89531 5.11125 5.12615 5.15088 5.25017 5.43834 5.49086 5.55205 5.60604 5.71420 5.72646 5.80288 5.89414 5.91268 6.19858 6.23238 6.56270 6.59849 6.66098 6.73535 6.94921 7.25631 7.39335 7.60563 7.89860 8.07032 8.33127 8.66327 8.84014 9.41201 10.89002 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.002740 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.273199 B =10215.795817 C =10949.520228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.109 3.891 3 N -1.118 6.118 4 S 2.699 3.301 5 O -0.957 6.957 6 O -0.959 6.959 7 C -0.671 4.671 8 C -0.027 4.027 9 C -0.119 4.119 10 C -0.053 4.053 11 C 0.537 3.463 12 O -0.539 6.539 13 N -0.580 5.580 14 C 0.074 3.926 15 C 0.258 3.742 16 H 0.065 0.935 17 C -0.147 4.147 18 C -0.531 4.531 19 H 0.060 0.940 20 C 0.066 3.934 21 N -0.886 5.886 22 Si 0.901 3.099 23 H -0.276 1.276 24 H -0.285 1.285 25 H -0.277 1.277 26 C -0.092 4.092 27 C -0.029 4.029 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.418 0.582 34 H 0.143 0.857 35 H 0.147 0.853 36 H 0.048 0.952 37 H 0.085 0.915 38 H 0.059 0.941 39 H 0.030 0.970 40 H 0.012 0.988 41 H 0.095 0.905 42 H 0.265 0.735 43 H 0.142 0.858 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.915 8.905 14.053 22.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.017 4.017 3 N -0.879 5.879 4 S 2.789 3.211 5 O -0.947 6.947 6 O -0.949 6.949 7 C -0.758 4.758 8 C -0.046 4.046 9 C -0.138 4.138 10 C -0.057 4.057 11 C 0.323 3.677 12 O -0.418 6.418 13 N -0.310 5.310 14 C -0.069 4.069 15 C 0.158 3.842 16 H 0.083 0.917 17 C -0.205 4.205 18 C -0.570 4.570 19 H 0.078 0.922 20 C -0.137 4.137 21 N -0.523 5.523 22 Si 0.728 3.272 23 H -0.202 1.202 24 H -0.211 1.211 25 H -0.202 1.202 26 C -0.111 4.111 27 C -0.048 4.048 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.253 0.747 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.066 0.934 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.050 0.950 40 H 0.031 0.969 41 H 0.114 0.886 42 H 0.075 0.925 43 H 0.160 0.840 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -13.852 8.718 14.777 22.050 hybrid contribution -0.738 -0.596 -1.545 1.813 sum -14.590 8.122 13.232 21.305 Atomic orbital electron populations 1.21954 0.93935 1.03171 1.02758 1.21323 0.96611 0.81289 1.02513 1.55567 1.28679 1.14948 1.88684 1.01718 0.72326 0.73214 0.73865 1.93588 1.83816 1.74540 1.42723 1.93595 1.85214 1.29161 1.86968 1.30907 1.20644 1.06427 1.17873 1.20825 0.94269 0.98853 0.90699 1.21875 0.97327 0.94778 0.99827 1.20674 0.95149 0.94658 0.95206 1.18272 0.84565 0.81943 0.82968 1.90771 1.30412 1.38232 1.82351 1.48238 1.35840 1.41179 1.05713 1.21980 0.90547 0.91605 1.02790 1.19032 0.91555 0.90315 0.83280 0.91745 1.22093 0.99076 0.98228 1.01126 1.21250 0.93936 1.28865 1.12927 0.92212 1.24892 0.95297 0.96290 0.97188 1.69866 1.12289 1.40829 1.29364 0.86522 0.80686 0.80173 0.79807 1.20173 1.21086 1.20205 1.21371 0.96782 1.00916 0.92073 1.20857 0.93655 0.92385 0.97920 0.91794 0.91827 0.90838 0.91377 0.90059 0.74709 0.83897 0.83529 0.93381 0.89611 0.92209 0.95046 0.96865 0.88646 0.92476 0.84033 0.83879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.70 10.05 37.16 0.37 -0.33 16 2 C 0.11 0.64 6.94 -4.04 -0.03 0.62 16 3 N -1.12 -7.43 6.00 -10.61 -0.06 -7.49 16 4 S 2.70 26.73 5.73 -107.50 -0.62 26.11 16 5 O -0.96 -11.94 16.74 -57.17 -0.96 -12.89 16 6 O -0.96 -11.76 17.27 -57.17 -0.99 -12.75 16 7 C -0.67 -7.39 5.95 -39.49 -0.24 -7.63 16 8 C -0.03 -0.30 9.50 -39.64 -0.38 -0.68 16 9 C -0.12 -1.54 7.57 -39.18 -0.30 -1.84 16 10 C -0.05 -0.85 5.24 -104.97 -0.55 -1.40 16 11 C 0.54 11.02 7.36 -12.33 -0.09 10.93 16 12 O -0.54 -13.16 16.25 5.32 0.09 -13.07 16 13 N -0.58 -11.96 2.75 -176.38 -0.49 -12.45 16 14 C 0.07 1.18 7.83 59.84 0.47 1.64 16 15 C 0.26 6.39 2.63 -69.08 -0.18 6.21 16 16 H 0.06 1.86 6.91 -51.93 -0.36 1.50 16 17 C -0.15 -3.41 8.97 37.15 0.33 -3.08 16 18 C -0.53 -13.86 7.96 -34.44 -0.27 -14.14 16 19 H 0.06 1.52 7.41 -52.49 -0.39 1.13 16 20 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 21 N -0.89 -24.45 11.32 55.43 0.63 -23.82 16 22 Si 0.90 20.39 29.54 -169.99 -5.02 15.37 16 23 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 24 H -0.29 -6.44 7.11 56.52 0.40 -6.04 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 26 C -0.09 -1.30 9.63 -39.19 -0.38 -1.67 16 27 C -0.03 -0.33 9.50 -39.64 -0.38 -0.71 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.08 0.49 7.75 -51.93 -0.40 0.08 16 33 H 0.42 1.96 8.65 -34.47 -0.30 1.66 16 34 H 0.14 1.26 7.60 -52.49 -0.40 0.86 16 35 H 0.15 1.70 5.30 -52.49 -0.28 1.42 16 36 H 0.05 0.64 6.89 -51.92 -0.36 0.29 16 37 H 0.09 1.44 7.09 -51.93 -0.37 1.07 16 38 H 0.06 0.80 5.81 -51.93 -0.30 0.50 16 39 H 0.03 0.66 7.67 -51.93 -0.40 0.27 16 40 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 42 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 43 H 0.14 1.96 8.05 -52.49 -0.42 1.54 16 44 H 0.14 1.33 7.60 -52.48 -0.40 0.93 16 LS Contribution 373.19 15.07 5.62 5.62 Total: -1.00 -34.59 373.19 -9.44 -44.02 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -5.94 Total: 1.76 kcal Atomic # 6 Polarization: -8.71 SS G_CDS: -1.71 Total: -10.41 kcal Atomic # 7 Polarization: -43.84 SS G_CDS: 0.08 Total: -43.76 kcal Atomic # 8 Polarization: -36.86 SS G_CDS: -1.86 Total: -38.72 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 16 Polarization: 26.73 SS G_CDS: -0.62 Total: 26.11 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.59 -9.44 -44.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.580 kcal (2) G-P(sol) polarization free energy of solvation -34.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds