Wall clock time and date at job start Sat Apr 11 2020 05:57:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46503 * 109.47437 * 2 1 4 4 S 1.65593 * 120.00348 * 164.99807 * 3 2 1 5 5 O 1.42102 * 106.40236 * 311.46074 * 4 3 2 6 6 O 1.42097 * 106.40442 * 178.54223 * 4 3 2 7 7 C 1.76202 * 107.21997 * 65.00296 * 4 3 2 8 8 C 1.38356 * 119.85392 * 89.99979 * 7 4 3 9 9 C 1.37956 * 120.14468 * 179.97438 * 8 7 4 10 10 C 1.39581 * 119.85166 * 0.27926 * 9 8 7 11 11 C 1.47842 * 120.14502 * 179.72291 * 10 9 8 12 12 O 1.21554 * 120.00380 * 140.80905 * 11 10 9 13 13 N 1.34783 * 120.00065 * 320.81468 * 11 10 9 14 14 C 1.46495 * 119.99759 * 4.86542 * 13 11 10 15 15 C 1.46497 * 119.99947 * 184.86673 * 13 11 10 16 16 H 1.08996 * 109.47297 * 359.97438 * 15 13 11 17 17 C 1.52995 * 109.47057 * 239.99742 * 15 13 11 18 18 C 1.50705 * 109.47128 * 119.99728 * 15 13 11 19 19 H 1.07997 * 119.99497 * 0.02562 * 18 15 13 20 20 C 1.37875 * 120.00110 * 179.97438 * 18 15 13 21 21 N 1.31513 * 119.99874 * 0.02562 * 20 18 15 22 22 Si 1.86801 * 119.99790 * 180.02562 * 20 18 15 23 23 H 1.48497 * 109.47356 * 60.00009 * 22 20 18 24 24 H 1.48506 * 109.46579 * 180.02562 * 22 20 18 25 25 H 1.48493 * 109.47058 * 299.99767 * 22 20 18 26 26 C 1.39574 * 119.71143 * 359.46439 * 10 9 8 27 27 C 1.37956 * 119.85237 * 0.51471 * 26 10 9 28 28 H 1.09001 * 109.47076 * 300.00227 * 1 2 3 29 29 H 1.09005 * 109.46861 * 59.99621 * 1 2 3 30 30 H 1.08997 * 109.47025 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47483 * 240.00067 * 2 1 3 32 32 H 1.08999 * 109.47504 * 120.00193 * 2 1 3 33 33 H 0.97008 * 119.99659 * 345.00133 * 3 2 1 34 34 H 1.08000 * 119.92685 * 359.97438 * 8 7 4 35 35 H 1.07997 * 120.07779 * 180.02562 * 9 8 7 36 36 H 1.09007 * 109.47329 * 85.55381 * 14 13 11 37 37 H 1.08997 * 109.47120 * 205.55353 * 14 13 11 38 38 H 1.09002 * 109.47398 * 325.55393 * 14 13 11 39 39 H 1.08998 * 109.47682 * 300.00068 * 17 15 13 40 40 H 1.09004 * 109.47587 * 60.00190 * 17 15 13 41 41 H 1.09006 * 109.47457 * 180.02562 * 17 15 13 42 42 H 0.97001 * 119.99688 * 180.02562 * 21 20 18 43 43 H 1.08000 * 120.07346 * 180.23503 * 26 10 9 44 44 H 1.08005 * 119.93037 * 179.74123 * 27 26 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6003 1.7001 0.3712 5 8 3.8848 0.9833 1.5647 6 8 3.7651 3.1064 0.2513 7 6 4.5895 0.9737 -0.8932 8 6 4.9186 1.7091 -2.0180 9 6 5.6931 1.1465 -3.0114 10 6 6.1400 -0.1695 -2.8825 11 6 6.9652 -0.7809 -3.9459 12 8 7.8932 -1.5090 -3.6523 13 7 6.6888 -0.5307 -5.2412 14 6 5.6400 0.4293 -5.5941 15 6 7.4371 -1.2189 -6.2960 16 1 8.1694 -1.8881 -5.8445 17 6 8.1579 -0.1872 -7.1660 18 6 6.4847 -2.0173 -7.1485 19 1 5.4277 -2.0122 -6.9268 20 6 6.9626 -2.7533 -8.2118 21 7 8.2497 -2.7591 -8.4819 22 14 5.7819 -3.7424 -9.2688 23 1 4.7846 -2.8299 -9.8836 24 1 6.5405 -4.4400 -10.3380 25 1 5.0823 -4.7440 -8.4249 26 6 5.8089 -0.9040 -1.7428 27 6 5.0341 -0.3294 -0.7566 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8899 33 1 1.4150 2.1090 -0.2174 34 1 4.5683 2.7258 -2.1185 35 1 5.9497 1.7217 -3.8887 36 1 6.0579 1.4360 -5.6062 37 1 5.2440 0.1884 -6.5806 38 1 4.8376 0.3778 -4.8581 39 1 7.4259 0.4824 -7.6175 40 1 8.8468 0.3903 -6.5495 41 1 8.7143 -0.6991 -7.9512 42 1 8.5858 -3.2766 -9.2303 43 1 6.1547 -1.9215 -1.6353 44 1 4.7736 -0.8980 0.1239 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103443493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:08 Heat of formation + Delta-G solvation = -99.884015 kcal Electronic energy + Delta-G solvation = -27514.720710 eV Core-core repulsion = 23558.513837 eV Total energy + Delta-G solvation = -3956.206873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.49654 -39.48876 -38.39308 -37.30394 -36.99820 -36.75077 -34.99965 -32.94370 -32.26850 -30.91488 -30.57001 -27.91033 -27.34071 -25.63561 -24.01137 -23.64785 -22.86717 -20.69475 -20.56968 -19.11698 -18.68713 -18.40266 -18.08304 -17.54278 -17.22556 -16.59844 -16.44329 -15.97841 -15.71162 -15.62134 -15.41210 -15.15198 -14.68300 -14.47177 -14.23044 -14.09533 -14.05415 -13.88234 -13.55904 -13.27197 -13.20295 -13.03596 -12.92152 -12.79662 -12.72828 -12.70833 -12.54374 -12.41315 -12.27111 -12.20666 -12.15959 -12.00516 -11.26514 -10.92974 -10.57546 -10.51930 -10.39485 -10.15164 -9.46589 -8.17823 -6.35202 -0.78696 -0.53382 0.17067 1.41106 1.43579 1.50549 1.54897 1.99967 2.12511 2.41863 2.47389 2.73399 3.10703 3.23794 3.42984 3.70837 3.77945 4.08350 4.13941 4.24846 4.32687 4.34126 4.44535 4.52773 4.61773 4.68910 4.70039 4.81489 4.84941 4.87896 4.90869 4.97488 5.00825 5.14674 5.16468 5.19420 5.40001 5.42277 5.50384 5.61285 5.62713 5.96847 6.10512 6.12831 6.63709 6.71289 7.14200 7.37683 8.86755 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.002740 C = 0.002557 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.273199 B =10215.795817 C =10949.520228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.098 3.902 3 N -1.103 6.103 4 S 2.724 3.276 5 O -0.981 6.981 6 O -0.979 6.979 7 C -0.665 4.665 8 C -0.021 4.021 9 C -0.114 4.114 10 C -0.077 4.077 11 C 0.530 3.470 12 O -0.595 6.595 13 N -0.586 5.586 14 C 0.070 3.930 15 C 0.261 3.739 16 H 0.009 0.991 17 C -0.133 4.133 18 C -0.542 4.542 19 H 0.064 0.936 20 C 0.016 3.984 21 N -0.917 5.917 22 Si 0.967 3.033 23 H -0.260 1.260 24 H -0.285 1.285 25 H -0.277 1.277 26 C -0.103 4.103 27 C -0.023 4.023 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.430 0.570 34 H 0.174 0.826 35 H 0.162 0.838 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.050 0.950 40 H 0.019 0.981 41 H 0.069 0.931 42 H 0.266 0.734 43 H 0.132 0.868 44 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.131 10.607 14.552 25.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.027 4.027 3 N -0.868 5.868 4 S 2.813 3.187 5 O -0.971 6.971 6 O -0.969 6.969 7 C -0.751 4.751 8 C -0.039 4.039 9 C -0.133 4.133 10 C -0.080 4.080 11 C 0.318 3.682 12 O -0.478 6.478 13 N -0.315 5.315 14 C -0.072 4.072 15 C 0.160 3.840 16 H 0.027 0.973 17 C -0.191 4.191 18 C -0.581 4.581 19 H 0.082 0.918 20 C -0.184 4.184 21 N -0.555 5.555 22 Si 0.791 3.209 23 H -0.185 1.185 24 H -0.210 1.210 25 H -0.202 1.202 26 C -0.123 4.123 27 C -0.042 4.042 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.267 0.733 34 H 0.191 0.809 35 H 0.180 0.820 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.038 0.962 41 H 0.088 0.912 42 H 0.075 0.925 43 H 0.150 0.850 44 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -17.102 10.464 15.266 25.200 hybrid contribution 0.204 -1.098 -1.593 1.945 sum -16.898 9.366 13.674 23.669 Atomic orbital electron populations 1.21961 0.92628 1.03864 1.03228 1.21539 0.97772 0.80575 1.02846 1.55272 1.27276 1.15923 1.88309 1.00927 0.72629 0.72162 0.73028 1.93563 1.84610 1.74959 1.43922 1.93567 1.85882 1.30348 1.87092 1.31239 1.19923 1.05964 1.17961 1.21171 0.93013 0.99992 0.89773 1.21993 0.97000 0.93375 1.00960 1.20325 0.96869 0.96297 0.94553 1.19005 0.84269 0.81154 0.83724 1.90724 1.32941 1.40877 1.83240 1.48203 1.36483 1.41642 1.05133 1.22273 0.90165 0.91716 1.03049 1.18626 0.91010 0.90419 0.83954 0.97293 1.21884 0.99216 0.97839 1.00199 1.21519 0.94221 1.29237 1.13084 0.91810 1.25748 0.96815 0.97277 0.98514 1.70018 1.14069 1.41592 1.29869 0.85481 0.78722 0.78722 0.77938 1.18480 1.21012 1.20202 1.21396 0.97676 1.00823 0.92420 1.21049 0.92556 0.92850 0.97757 0.91518 0.91195 0.90066 0.90816 0.90123 0.73254 0.80872 0.82049 0.90335 0.90522 0.89456 0.93048 0.96157 0.91219 0.92530 0.85008 0.81651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.94 10.05 71.98 0.72 -0.21 16 2 C 0.10 0.88 6.94 86.38 0.60 1.48 16 3 N -1.10 -11.17 6.00 -187.50 -1.12 -12.30 16 4 S 2.72 46.28 5.73 -56.49 -0.32 45.95 16 5 O -0.98 -22.23 16.74 -128.00 -2.14 -24.37 16 6 O -0.98 -21.06 17.27 -128.00 -2.21 -23.27 16 7 C -0.66 -12.78 5.95 22.33 0.13 -12.65 16 8 C -0.02 -0.39 9.50 22.23 0.21 -0.18 16 9 C -0.11 -2.69 7.57 22.53 0.17 -2.52 16 10 C -0.08 -2.43 5.24 -20.09 -0.11 -2.53 16 11 C 0.53 22.51 7.36 86.78 0.64 23.15 16 12 O -0.59 -31.07 16.25 -3.88 -0.06 -31.13 16 13 N -0.59 -24.51 2.75 -830.22 -2.29 -26.80 16 14 C 0.07 2.08 7.83 127.77 1.00 3.08 16 15 C 0.26 13.46 2.63 44.25 0.12 13.58 16 16 H 0.01 0.56 6.91 -2.39 -0.02 0.55 16 17 C -0.13 -6.31 8.97 71.98 0.65 -5.66 16 18 C -0.54 -28.80 7.96 25.60 0.20 -28.60 16 19 H 0.06 3.25 7.41 -2.91 -0.02 3.23 16 20 C 0.02 0.88 5.30 84.65 0.45 1.33 16 21 N -0.92 -52.15 11.32 21.45 0.24 -51.91 16 22 Si 0.97 41.89 29.54 68.60 2.03 43.91 16 23 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 24 H -0.28 -12.21 7.11 99.48 0.71 -11.51 16 25 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 26 C -0.10 -2.90 9.63 22.53 0.22 -2.69 16 27 C -0.02 -0.49 9.50 22.23 0.21 -0.28 16 28 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.07 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.08 0.76 7.75 -2.39 -0.02 0.74 16 33 H 0.43 2.54 8.65 -96.74 -0.84 1.71 16 34 H 0.17 2.26 7.60 -2.91 -0.02 2.24 16 35 H 0.16 3.23 5.30 -2.91 -0.02 3.21 16 36 H 0.08 1.87 6.89 -2.38 -0.02 1.85 16 37 H 0.08 2.45 7.09 -2.39 -0.02 2.43 16 38 H 0.09 2.12 5.81 -2.39 -0.01 2.11 16 39 H 0.05 2.17 7.67 -2.39 -0.02 2.15 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.07 3.68 6.07 -2.38 -0.01 3.67 16 42 H 0.27 14.34 8.31 -92.71 -0.77 13.57 16 43 H 0.13 3.85 8.05 -2.91 -0.02 3.83 16 44 H 0.17 2.73 7.60 -2.91 -0.02 2.70 16 Total: -1.00 -78.21 373.19 -0.47 -78.68 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.20 Total: 13.92 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 5.21 Total: -12.69 kcal Atomic # 7 Polarization: -87.83 SS G_CDS: -3.17 Total: -91.00 kcal Atomic # 8 Polarization: -74.35 SS G_CDS: -4.42 Total: -78.77 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.91 kcal Atomic # 16 Polarization: 46.28 SS G_CDS: -0.32 Total: 45.95 kcal Total: -78.21 -0.47 -78.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103443493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.203 kcal (2) G-P(sol) polarization free energy of solvation -78.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds