Wall clock time and date at job start Sat Apr 11 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47106 * 2 1 4 4 C 1.50701 * 109.47535 * 239.99936 * 2 1 3 5 5 H 1.08005 * 119.99353 * 268.23501 * 4 2 1 6 6 C 1.37871 * 120.00208 * 88.23509 * 4 2 1 7 7 N 1.31511 * 120.00015 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00029 * 359.96609 * 6 4 2 9 9 H 1.48499 * 109.47212 * 94.21638 * 8 6 4 10 10 H 1.48501 * 109.46990 * 214.21936 * 8 6 4 11 11 H 1.48500 * 109.47048 * 334.21800 * 8 6 4 12 12 N 1.46501 * 109.47023 * 119.99438 * 2 1 3 13 13 C 1.46500 * 119.99961 * 56.46116 * 12 2 1 14 14 S 1.65604 * 120.00132 * 236.45909 * 12 2 1 15 15 O 1.42096 * 106.40195 * 153.06294 * 14 12 2 16 16 O 1.42101 * 106.40171 * 20.14236 * 14 12 2 17 17 C 1.76204 * 107.21789 * 266.60243 * 14 12 2 18 18 C 1.38385 * 119.92715 * 274.68988 * 17 14 12 19 19 C 1.38331 * 120.29352 * 180.02562 * 18 17 14 20 20 C 1.37979 * 120.14532 * 0.02562 * 19 18 17 21 21 C 1.39555 * 119.85352 * 359.97438 * 20 19 18 22 22 C 1.47842 * 120.14400 * 180.02562 * 21 20 19 23 23 O 1.21557 * 120.00172 * 318.08130 * 22 21 20 24 24 N 1.34782 * 119.99845 * 138.08742 * 22 21 20 25 25 C 1.46493 * 119.99718 * 184.40755 * 24 22 21 26 26 C 1.46498 * 120.00015 * 4.40475 * 24 22 21 27 27 C 1.37933 * 119.92698 * 94.68538 * 17 14 12 28 28 H 1.09000 * 109.47494 * 304.63364 * 1 2 3 29 29 H 1.09003 * 109.47332 * 64.63659 * 1 2 3 30 30 H 1.09004 * 109.47260 * 184.63255 * 1 2 3 31 31 H 0.97004 * 119.99988 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47116 * 269.99681 * 13 12 2 33 33 H 1.08996 * 109.46920 * 29.99685 * 13 12 2 34 34 H 1.09006 * 109.47045 * 149.99820 * 13 12 2 35 35 H 1.08005 * 119.84824 * 359.97438 * 18 17 14 36 36 H 1.08005 * 119.92392 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.07435 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47286 * 89.99984 * 25 24 22 39 39 H 1.09003 * 109.47408 * 209.99633 * 25 24 22 40 40 H 1.08995 * 109.47838 * 329.99808 * 25 24 22 41 41 H 1.08993 * 109.47019 * 84.57458 * 26 24 22 42 42 H 1.08998 * 109.46846 * 204.57452 * 26 24 22 43 43 H 1.09005 * 109.47053 * 324.57380 * 26 24 22 44 44 H 1.07997 * 120.07599 * 0.28222 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2395 -1.7698 -1.1954 6 6 2.2275 -0.0080 -2.4006 7 7 2.6665 -0.6279 -3.4742 8 14 1.8683 1.8241 -2.4613 9 1 3.1168 2.5825 -2.1945 10 1 1.3491 2.1825 -3.8056 11 1 0.8533 2.1639 -1.4319 12 7 2.0182 -0.6905 1.1963 13 6 1.6015 -2.0684 1.4681 14 16 3.0413 0.0865 2.2412 15 8 2.8382 -0.5061 3.5166 16 8 2.8843 1.4775 1.9966 17 6 4.6867 -0.3207 1.7597 18 6 5.2742 -1.4841 2.2249 19 6 6.5657 -1.8109 1.8522 20 6 7.2768 -0.9774 1.0135 21 6 6.6902 0.1974 0.5407 22 6 7.4460 1.0949 -0.3586 23 8 8.6193 1.3263 -0.1407 24 7 6.8342 1.6565 -1.4201 25 6 7.6052 2.4677 -2.3653 26 6 5.3981 1.4558 -1.6286 27 6 5.3861 0.5207 0.9199 28 1 -0.3634 0.5840 0.8455 29 1 -0.3634 0.4402 -0.9286 30 1 -0.3634 -1.0243 0.0830 31 1 2.8035 -0.1338 -4.2977 32 1 0.6906 -2.0611 2.0666 33 1 1.4132 -2.5835 0.5261 34 1 2.3907 -2.5858 2.0137 35 1 4.7223 -2.1393 2.8826 36 1 7.0186 -2.7201 2.2191 37 1 8.2848 -1.2339 0.7229 38 1 7.9949 1.8294 -3.1584 39 1 6.9604 3.2324 -2.7984 40 1 8.4342 2.9449 -1.8428 41 1 4.8403 2.1872 -1.0439 42 1 5.1635 1.5806 -2.6857 43 1 5.1219 0.4501 -1.3114 44 1 4.9281 1.4306 0.5611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103496396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:15 Heat of formation + Delta-G solvation = -61.336676 kcal Electronic energy + Delta-G solvation = -29576.442118 eV Core-core repulsion = 25621.906783 eV Total energy + Delta-G solvation = -3954.535335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.30390 -38.26565 -36.93112 -36.46142 -35.51373 -35.46094 -32.64849 -31.55587 -31.27897 -30.05586 -27.83911 -26.34140 -25.87598 -25.21769 -23.24770 -23.07075 -20.78496 -20.14089 -18.31159 -17.71271 -17.27530 -16.83465 -16.58107 -16.13474 -15.91512 -15.75497 -15.48099 -14.85200 -14.36035 -14.05958 -13.76841 -13.56357 -13.26434 -13.18859 -12.87602 -12.65293 -12.60821 -12.51505 -12.34488 -12.19560 -12.09491 -11.91043 -11.83160 -11.75288 -11.57505 -11.45383 -11.25365 -10.93102 -10.76035 -10.63414 -10.42724 -9.92157 -9.88967 -9.52169 -9.31570 -8.95033 -8.81414 -8.58079 -8.17786 -6.32567 -4.33614 0.68482 0.89584 1.13069 2.69372 3.03084 3.04914 3.20727 3.28863 3.36652 3.69220 4.13576 4.17749 4.38640 4.66983 4.85923 4.94291 4.99138 5.10672 5.31573 5.35166 5.43788 5.44685 5.48234 5.58700 5.72472 5.79955 5.85742 5.96391 6.02462 6.06061 6.15904 6.19478 6.23517 6.26769 6.35802 6.45338 6.49575 6.57083 6.75454 6.85324 7.08692 7.29289 7.34114 7.50918 8.13931 8.27204 8.72950 9.27696 10.78485 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009547 B = 0.007155 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.162861 B = 3912.480495 C = 5786.888437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.231 3.769 3 H 0.059 0.941 4 C -0.524 4.524 5 H 0.084 0.916 6 C 0.082 3.918 7 N -0.884 5.884 8 Si 0.841 3.159 9 H -0.263 1.263 10 H -0.284 1.284 11 H -0.254 1.254 12 N -0.974 5.974 13 C 0.102 3.898 14 S 2.680 3.320 15 O -0.970 6.970 16 O -0.962 6.962 17 C -0.670 4.670 18 C 0.000 4.000 19 C -0.146 4.146 20 C -0.018 4.018 21 C -0.151 4.151 22 C 0.563 3.437 23 O -0.543 6.543 24 N -0.611 5.611 25 C 0.085 3.915 26 C 0.064 3.936 27 C 0.017 3.983 28 H 0.028 0.972 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.266 0.734 32 H 0.049 0.951 33 H 0.083 0.917 34 H 0.054 0.946 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.079 0.921 43 H 0.094 0.906 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.153 -0.361 5.320 6.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.127 3.873 3 H 0.077 0.923 4 C -0.563 4.563 5 H 0.102 0.898 6 C -0.122 4.122 7 N -0.521 5.521 8 Si 0.666 3.334 9 H -0.188 1.188 10 H -0.210 1.210 11 H -0.178 1.178 12 N -0.814 5.814 13 C -0.044 4.044 14 S 2.771 3.229 15 O -0.960 6.960 16 O -0.953 6.953 17 C -0.755 4.755 18 C -0.020 4.020 19 C -0.165 4.165 20 C -0.037 4.037 21 C -0.154 4.154 22 C 0.351 3.649 23 O -0.422 6.422 24 N -0.344 5.344 25 C -0.058 4.058 26 C -0.078 4.078 27 C -0.003 4.003 28 H 0.047 0.953 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.067 0.933 33 H 0.102 0.898 34 H 0.073 0.927 35 H 0.158 0.842 36 H 0.155 0.845 37 H 0.153 0.847 38 H 0.075 0.925 39 H 0.090 0.910 40 H 0.096 0.904 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.112 0.888 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.594 0.335 5.900 7.485 hybrid contribution 0.271 0.552 -0.904 1.093 sum 4.865 0.887 4.997 7.030 Atomic orbital electron populations 1.22222 0.97645 1.00823 0.99826 1.19183 0.91935 0.93197 0.82976 0.92285 1.21237 1.44533 0.97789 0.92761 0.89797 1.24879 0.94144 0.97615 0.95540 1.69891 1.44431 1.36283 1.01462 0.87497 0.80657 0.86743 0.78455 1.18796 1.20951 1.17783 1.57488 1.59789 1.24129 1.39961 1.21301 0.99037 0.82058 1.01968 1.02306 0.73326 0.73793 0.73501 1.93530 1.85240 1.78705 1.38539 1.93535 1.85660 1.30341 1.85741 1.31209 1.26320 1.05388 1.12589 1.21037 0.94733 0.92851 0.93340 1.21177 0.95022 1.00559 0.99761 1.21371 0.99064 0.91256 0.92010 1.19891 0.95334 0.97854 1.02367 1.18291 0.86332 0.79812 0.80438 1.90742 1.16192 1.62083 1.73183 1.47734 1.10546 1.50581 1.25498 1.21678 0.96769 0.94941 0.92396 1.22514 0.78255 1.03706 1.03359 1.21284 0.91824 0.97369 0.89789 0.95263 0.92362 0.92787 0.92376 0.93284 0.89805 0.92734 0.84205 0.84517 0.84695 0.92460 0.90996 0.90442 0.91828 0.90188 0.88796 0.83530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 8.78 37.15 0.33 -2.45 16 2 C 0.23 4.80 2.19 -69.08 -0.15 4.65 16 3 H 0.06 1.29 4.42 -51.93 -0.23 1.06 16 4 C -0.52 -12.24 8.73 -34.44 -0.30 -12.54 16 5 H 0.08 2.12 7.10 -52.48 -0.37 1.75 16 6 C 0.08 2.00 5.47 -17.82 -0.10 1.90 16 7 N -0.88 -22.95 13.96 55.43 0.77 -22.18 16 8 Si 0.84 18.15 25.74 -169.99 -4.38 13.77 16 9 H -0.26 -5.22 5.40 56.52 0.31 -4.91 16 10 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 11 H -0.25 -5.40 5.93 56.52 0.34 -5.07 16 12 N -0.97 -17.94 3.06 -115.85 -0.35 -18.30 16 13 C 0.10 1.58 9.09 59.85 0.54 2.12 16 14 S 2.68 49.15 5.63 -107.50 -0.61 48.54 16 15 O -0.97 -18.16 16.59 -57.17 -0.95 -19.11 16 16 O -0.96 -19.75 15.61 -57.17 -0.89 -20.64 16 17 C -0.67 -11.36 5.96 -39.64 -0.24 -11.59 16 18 C 0.00 0.00 9.52 -39.49 -0.38 -0.38 16 19 C -0.15 -1.89 10.03 -39.64 -0.40 -2.29 16 20 C -0.02 -0.26 9.66 -39.19 -0.38 -0.64 16 21 C -0.15 -2.53 5.14 -104.97 -0.54 -3.07 16 22 C 0.56 9.87 7.32 -12.33 -0.09 9.78 16 23 O -0.54 -10.45 16.50 5.32 0.09 -10.36 16 24 N -0.61 -9.92 3.27 -190.66 -0.62 -10.54 16 25 C 0.08 1.11 10.45 59.84 0.63 1.73 16 26 C 0.06 1.09 7.55 59.85 0.45 1.54 16 27 C 0.02 0.30 7.10 -39.18 -0.28 0.02 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.06 1.13 6.80 -51.93 -0.35 0.78 16 30 H 0.05 0.95 7.43 -51.93 -0.39 0.56 16 31 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 32 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.08 1.32 6.86 -51.93 -0.36 0.97 16 34 H 0.05 0.72 7.88 -51.93 -0.41 0.31 16 35 H 0.14 1.70 7.72 -52.48 -0.41 1.29 16 36 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 37 H 0.14 1.72 8.06 -52.49 -0.42 1.29 16 38 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.07 0.80 8.07 -51.93 -0.42 0.38 16 40 H 0.08 1.01 7.36 -51.93 -0.38 0.63 16 41 H 0.06 1.07 6.09 -51.93 -0.32 0.76 16 42 H 0.08 1.33 7.95 -51.93 -0.41 0.92 16 43 H 0.09 1.76 6.04 -51.93 -0.31 1.44 16 44 H 0.15 2.58 5.03 -52.49 -0.26 2.32 16 LS Contribution 363.39 15.07 5.48 5.48 Total: -1.00 -29.84 363.39 -8.39 -38.23 By element: Atomic # 1 Polarization: 12.36 SS G_CDS: -6.03 Total: 6.33 kcal Atomic # 6 Polarization: -10.33 SS G_CDS: -0.90 Total: -11.23 kcal Atomic # 7 Polarization: -50.81 SS G_CDS: -0.21 Total: -51.02 kcal Atomic # 8 Polarization: -48.36 SS G_CDS: -1.75 Total: -50.11 kcal Atomic # 14 Polarization: 18.15 SS G_CDS: -4.38 Total: 13.77 kcal Atomic # 16 Polarization: 49.15 SS G_CDS: -0.61 Total: 48.54 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -29.84 -8.39 -38.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.105 kcal (2) G-P(sol) polarization free energy of solvation -29.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds