Wall clock time and date at job start Sat Apr 11 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 109.47106 * 2 1 4 4 C 1.50701 * 109.47535 * 239.99936 * 2 1 3 5 5 H 1.08005 * 119.99353 * 268.23501 * 4 2 1 6 6 C 1.37871 * 120.00208 * 88.23509 * 4 2 1 7 7 N 1.31511 * 120.00015 * 179.97438 * 6 4 2 8 8 Si 1.86803 * 120.00029 * 359.96609 * 6 4 2 9 9 H 1.48499 * 109.47212 * 94.21638 * 8 6 4 10 10 H 1.48501 * 109.46990 * 214.21936 * 8 6 4 11 11 H 1.48500 * 109.47048 * 334.21800 * 8 6 4 12 12 N 1.46501 * 109.47023 * 119.99438 * 2 1 3 13 13 C 1.46500 * 119.99961 * 56.46116 * 12 2 1 14 14 S 1.65604 * 120.00132 * 236.45909 * 12 2 1 15 15 O 1.42096 * 106.40195 * 153.06294 * 14 12 2 16 16 O 1.42101 * 106.40171 * 20.14236 * 14 12 2 17 17 C 1.76204 * 107.21789 * 266.60243 * 14 12 2 18 18 C 1.38385 * 119.92715 * 274.68988 * 17 14 12 19 19 C 1.38331 * 120.29352 * 180.02562 * 18 17 14 20 20 C 1.37979 * 120.14532 * 0.02562 * 19 18 17 21 21 C 1.39555 * 119.85352 * 359.97438 * 20 19 18 22 22 C 1.47842 * 120.14400 * 180.02562 * 21 20 19 23 23 O 1.21557 * 120.00172 * 318.08130 * 22 21 20 24 24 N 1.34782 * 119.99845 * 138.08742 * 22 21 20 25 25 C 1.46493 * 119.99718 * 184.40755 * 24 22 21 26 26 C 1.46498 * 120.00015 * 4.40475 * 24 22 21 27 27 C 1.37933 * 119.92698 * 94.68538 * 17 14 12 28 28 H 1.09000 * 109.47494 * 304.63364 * 1 2 3 29 29 H 1.09003 * 109.47332 * 64.63659 * 1 2 3 30 30 H 1.09004 * 109.47260 * 184.63255 * 1 2 3 31 31 H 0.97004 * 119.99988 * 179.97438 * 7 6 4 32 32 H 1.09002 * 109.47116 * 269.99681 * 13 12 2 33 33 H 1.08996 * 109.46920 * 29.99685 * 13 12 2 34 34 H 1.09006 * 109.47045 * 149.99820 * 13 12 2 35 35 H 1.08005 * 119.84824 * 359.97438 * 18 17 14 36 36 H 1.08005 * 119.92392 * 179.97438 * 19 18 17 37 37 H 1.08000 * 120.07435 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47286 * 89.99984 * 25 24 22 39 39 H 1.09003 * 109.47408 * 209.99633 * 25 24 22 40 40 H 1.08995 * 109.47838 * 329.99808 * 25 24 22 41 41 H 1.08993 * 109.47019 * 84.57458 * 26 24 22 42 42 H 1.08998 * 109.46846 * 204.57452 * 26 24 22 43 43 H 1.09005 * 109.47053 * 324.57380 * 26 24 22 44 44 H 1.07997 * 120.07599 * 0.28222 * 27 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.2395 -1.7698 -1.1954 6 6 2.2275 -0.0080 -2.4006 7 7 2.6665 -0.6279 -3.4742 8 14 1.8683 1.8241 -2.4613 9 1 3.1168 2.5825 -2.1945 10 1 1.3491 2.1825 -3.8056 11 1 0.8533 2.1639 -1.4319 12 7 2.0182 -0.6905 1.1963 13 6 1.6015 -2.0684 1.4681 14 16 3.0413 0.0865 2.2412 15 8 2.8382 -0.5061 3.5166 16 8 2.8843 1.4775 1.9966 17 6 4.6867 -0.3207 1.7597 18 6 5.2742 -1.4841 2.2249 19 6 6.5657 -1.8109 1.8522 20 6 7.2768 -0.9774 1.0135 21 6 6.6902 0.1974 0.5407 22 6 7.4460 1.0949 -0.3586 23 8 8.6193 1.3263 -0.1407 24 7 6.8342 1.6565 -1.4201 25 6 7.6052 2.4677 -2.3653 26 6 5.3981 1.4558 -1.6286 27 6 5.3861 0.5207 0.9199 28 1 -0.3634 0.5840 0.8455 29 1 -0.3634 0.4402 -0.9286 30 1 -0.3634 -1.0243 0.0830 31 1 2.8035 -0.1338 -4.2977 32 1 0.6906 -2.0611 2.0666 33 1 1.4132 -2.5835 0.5261 34 1 2.3907 -2.5858 2.0137 35 1 4.7223 -2.1393 2.8826 36 1 7.0186 -2.7201 2.2191 37 1 8.2848 -1.2339 0.7229 38 1 7.9949 1.8294 -3.1584 39 1 6.9604 3.2324 -2.7984 40 1 8.4342 2.9449 -1.8428 41 1 4.8403 2.1872 -1.0439 42 1 5.1635 1.5806 -2.6857 43 1 5.1219 0.4501 -1.3114 44 1 4.9281 1.4306 0.5611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103496396.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:15 Heat of formation + Delta-G solvation = -81.697966 kcal Electronic energy + Delta-G solvation = -29577.325049 eV Core-core repulsion = 25621.906783 eV Total energy + Delta-G solvation = -3955.418266 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.58165 -39.49481 -38.43201 -37.98571 -36.96249 -36.83907 -34.43472 -32.74771 -32.46799 -31.63178 -29.04900 -27.62820 -27.31006 -26.89088 -24.44422 -24.29190 -22.38427 -21.42259 -19.73646 -19.24050 -18.72054 -18.32997 -18.01558 -17.35422 -17.29320 -17.05879 -16.88475 -16.33185 -15.78516 -15.33055 -15.17819 -14.82849 -14.63463 -14.49753 -14.41179 -14.29929 -14.00397 -13.70530 -13.59595 -13.51685 -13.41878 -13.32737 -13.26060 -13.03505 -12.99472 -12.91557 -12.73146 -12.51419 -12.26794 -12.11126 -11.87138 -11.66986 -11.28636 -11.15048 -10.66126 -10.53821 -10.13749 -9.88814 -9.66413 -8.20647 -6.23762 -0.65212 -0.37862 -0.09225 1.33856 1.39826 1.44246 1.52798 1.81812 1.98104 2.38317 2.43871 2.73039 3.09300 3.15781 3.36576 3.62394 3.85553 3.97727 4.03937 4.07591 4.20826 4.27475 4.32985 4.41516 4.51181 4.55333 4.67863 4.75327 4.76948 4.78950 4.82592 4.85130 4.92339 4.99819 5.02622 5.10483 5.17923 5.26433 5.36427 5.51685 5.59861 5.63651 5.93765 6.02623 6.42018 6.81578 6.82173 7.41023 8.93393 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009547 B = 0.007155 C = 0.004837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2932.162861 B = 3912.480495 C = 5786.888437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.232 3.768 3 H 0.049 0.951 4 C -0.514 4.514 5 H 0.059 0.941 6 C 0.050 3.950 7 N -0.924 5.924 8 Si 0.871 3.129 9 H -0.241 1.241 10 H -0.290 1.290 11 H -0.249 1.249 12 N -0.979 5.979 13 C 0.093 3.907 14 S 2.691 3.309 15 O -0.973 6.973 16 O -0.990 6.990 17 C -0.683 4.683 18 C -0.003 4.003 19 C -0.132 4.132 20 C -0.020 4.020 21 C -0.169 4.169 22 C 0.559 3.441 23 O -0.566 6.566 24 N -0.611 5.611 25 C 0.078 3.922 26 C 0.071 3.929 27 C 0.001 3.999 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.066 0.934 31 H 0.266 0.734 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.167 0.833 36 H 0.182 0.818 37 H 0.153 0.847 38 H 0.067 0.933 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.063 0.937 42 H 0.082 0.918 43 H 0.075 0.925 44 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.562 -1.069 6.594 8.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.127 3.873 3 H 0.067 0.933 4 C -0.554 4.554 5 H 0.077 0.923 6 C -0.151 4.151 7 N -0.564 5.564 8 Si 0.695 3.305 9 H -0.165 1.165 10 H -0.216 1.216 11 H -0.172 1.172 12 N -0.818 5.818 13 C -0.052 4.052 14 S 2.784 3.216 15 O -0.964 6.964 16 O -0.980 6.980 17 C -0.771 4.771 18 C -0.022 4.022 19 C -0.150 4.150 20 C -0.039 4.039 21 C -0.173 4.173 22 C 0.348 3.652 23 O -0.447 6.447 24 N -0.343 5.343 25 C -0.063 4.063 26 C -0.072 4.072 27 C -0.019 4.019 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.085 0.915 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.097 0.903 35 H 0.184 0.816 36 H 0.200 0.800 37 H 0.171 0.829 38 H 0.086 0.914 39 H 0.111 0.889 40 H 0.095 0.905 41 H 0.081 0.919 42 H 0.101 0.899 43 H 0.094 0.906 44 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.965 -0.365 7.185 8.741 hybrid contribution 0.189 0.668 -1.233 1.415 sum 5.154 0.304 5.952 7.879 Atomic orbital electron populations 1.22195 0.96306 1.01973 1.00176 1.19024 0.92991 0.92497 0.82772 0.93328 1.21306 1.43584 0.96706 0.93779 0.92283 1.25305 0.94172 1.00373 0.95252 1.69987 1.46672 1.37608 1.02093 0.86984 0.81643 0.83830 0.78070 1.16515 1.21607 1.17241 1.57329 1.60222 1.25267 1.39017 1.21548 1.00846 0.80592 1.02243 1.01743 0.73586 0.73063 0.73230 1.93518 1.85652 1.78616 1.38571 1.93495 1.86300 1.32161 1.86073 1.30987 1.25476 1.06850 1.13750 1.21478 0.95612 0.92060 0.93073 1.21662 0.94073 1.01309 0.97966 1.21740 0.99972 0.90491 0.91675 1.20007 0.95284 0.98966 1.03076 1.18487 0.86152 0.79845 0.80725 1.90717 1.17019 1.63066 1.73886 1.47836 1.10300 1.50478 1.25673 1.21897 0.96951 0.95344 0.92098 1.22359 0.78907 1.02625 1.03265 1.21222 0.92430 0.97511 0.90766 0.93669 0.93063 0.91512 0.92496 0.91464 0.90606 0.90288 0.81597 0.80043 0.82908 0.91401 0.88924 0.90474 0.91908 0.89928 0.90613 0.84695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.43 8.78 71.98 0.63 -4.80 16 2 C 0.23 9.53 2.19 44.24 0.10 9.63 16 3 H 0.05 2.11 4.42 -2.39 -0.01 2.10 16 4 C -0.51 -24.20 8.73 25.60 0.22 -23.98 16 5 H 0.06 3.04 7.10 -2.91 -0.02 3.02 16 6 C 0.05 2.42 5.47 84.65 0.46 2.89 16 7 N -0.92 -48.90 13.96 21.44 0.30 -48.60 16 8 Si 0.87 36.97 25.74 68.60 1.77 38.74 16 9 H -0.24 -9.27 5.40 99.48 0.54 -8.73 16 10 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.25 -10.29 5.93 99.48 0.59 -9.70 16 12 N -0.98 -34.93 3.06 -520.45 -1.59 -36.52 16 13 C 0.09 2.68 9.09 127.77 1.16 3.84 16 14 S 2.69 95.75 5.63 -56.49 -0.32 95.43 16 15 O -0.97 -34.48 16.59 -128.00 -2.12 -36.60 16 16 O -0.99 -40.44 15.61 -128.00 -2.00 -42.44 16 17 C -0.68 -22.37 5.96 22.23 0.13 -22.23 16 18 C 0.00 -0.08 9.52 22.33 0.21 0.13 16 19 C -0.13 -2.94 10.03 22.23 0.22 -2.71 16 20 C -0.02 -0.54 9.66 22.53 0.22 -0.32 16 21 C -0.17 -5.60 5.14 -20.09 -0.10 -5.70 16 22 C 0.56 19.47 7.32 86.78 0.64 20.11 16 23 O -0.57 -21.57 16.50 -3.90 -0.06 -21.63 16 24 N -0.61 -19.67 3.27 -875.38 -2.87 -22.54 16 25 C 0.08 1.98 10.45 127.77 1.33 3.31 16 26 C 0.07 2.43 7.55 127.77 0.96 3.40 16 27 C 0.00 0.02 7.10 22.53 0.16 0.18 16 28 H 0.04 1.50 8.14 -2.39 -0.02 1.49 16 29 H 0.05 1.94 6.80 -2.39 -0.02 1.93 16 30 H 0.07 2.25 7.43 -2.39 -0.02 2.24 16 31 H 0.27 13.39 8.31 -92.71 -0.77 12.61 16 32 H 0.07 1.69 8.14 -2.39 -0.02 1.68 16 33 H 0.08 2.32 6.86 -2.39 -0.02 2.30 16 34 H 0.08 1.87 7.88 -2.38 -0.02 1.85 16 35 H 0.17 3.37 7.72 -2.91 -0.02 3.35 16 36 H 0.18 2.40 8.06 -2.91 -0.02 2.38 16 37 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.09 1.93 8.07 -2.39 -0.02 1.91 16 40 H 0.08 1.96 7.36 -2.39 -0.02 1.94 16 41 H 0.06 2.14 6.09 -2.39 -0.01 2.12 16 42 H 0.08 2.74 7.95 -2.39 -0.02 2.72 16 43 H 0.08 2.89 6.04 -2.38 -0.01 2.88 16 44 H 0.14 4.88 5.03 -2.91 -0.01 4.87 16 Total: -1.00 -64.48 363.39 0.19 -64.29 By element: Atomic # 1 Polarization: 25.39 SS G_CDS: 0.74 Total: 26.13 kcal Atomic # 6 Polarization: -22.62 SS G_CDS: 6.35 Total: -16.27 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -4.16 Total: -107.65 kcal Atomic # 8 Polarization: -96.48 SS G_CDS: -4.19 Total: -100.67 kcal Atomic # 14 Polarization: 36.97 SS G_CDS: 1.77 Total: 38.74 kcal Atomic # 16 Polarization: 95.75 SS G_CDS: -0.32 Total: 95.43 kcal Total: -64.48 0.19 -64.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103496396.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.404 kcal (2) G-P(sol) polarization free energy of solvation -64.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds