Wall clock time and date at job start Sat Apr 11 2020 05:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46505 * 109.46668 * 2 1 4 4 C 1.34777 * 119.99553 * 180.02562 * 3 2 1 5 5 O 1.21552 * 120.00298 * 0.02562 * 4 3 2 6 6 C 1.47845 * 120.00012 * 179.97438 * 4 3 2 7 7 C 1.39571 * 120.14594 * 179.97438 * 6 4 3 8 8 C 1.37956 * 119.85308 * 180.02562 * 7 6 4 9 9 C 1.38361 * 120.14496 * 0.02562 * 8 7 6 10 10 C 1.50706 * 119.85111 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.47014 * 90.00243 * 10 9 8 12 12 S 1.65596 * 120.00034 * 164.99846 * 11 10 9 13 13 O 1.42097 * 104.27822 * 181.07072 * 12 11 10 14 14 O 1.42107 * 104.27703 * 308.92806 * 12 11 10 15 15 C 1.81393 * 104.45000 * 64.99722 * 12 11 10 16 16 C 1.53006 * 109.47382 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47061 * 180.02562 * 16 15 12 18 18 H 1.07989 * 120.00316 * 0.02562 * 17 16 15 19 19 C 1.37884 * 119.99553 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99973 * 0.02562 * 19 17 16 21 21 Si 1.86792 * 119.99708 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47506 * 90.00338 * 21 19 17 23 23 H 1.48505 * 109.47097 * 209.99949 * 21 19 17 24 24 H 1.48502 * 109.47603 * 330.00034 * 21 19 17 25 25 C 1.38356 * 120.29417 * 0.23278 * 9 8 7 26 26 C 1.37960 * 120.14290 * 359.48864 * 25 9 8 27 27 H 1.08992 * 109.47107 * 59.99797 * 1 2 3 28 28 H 1.09001 * 109.47028 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.47065 * 299.99874 * 1 2 3 30 30 H 1.08996 * 109.46625 * 240.00278 * 2 1 3 31 31 H 1.08992 * 109.47107 * 120.00203 * 2 1 3 32 32 H 0.96997 * 120.00523 * 359.97438 * 3 2 1 33 33 H 1.08003 * 120.07690 * 0.02562 * 7 6 4 34 34 H 1.08001 * 119.92660 * 180.02562 * 8 7 6 35 35 H 1.09000 * 109.46646 * 209.99569 * 10 9 8 36 36 H 1.09000 * 109.47248 * 330.00286 * 10 9 8 37 37 H 0.96999 * 119.99608 * 345.00138 * 11 10 9 38 38 H 1.09002 * 109.47486 * 299.99813 * 15 12 11 39 39 H 1.09003 * 109.47547 * 60.00357 * 15 12 11 40 40 H 1.09002 * 109.46452 * 300.00195 * 16 15 12 41 41 H 1.08997 * 109.47274 * 59.99945 * 16 15 12 42 42 H 0.96999 * 119.99745 * 179.97438 * 20 19 17 43 43 H 1.07994 * 119.92715 * 179.74290 * 25 9 8 44 44 H 1.07998 * 120.07313 * 180.24959 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6276 -0.0005 5 8 4.1333 0.7037 -0.0015 6 6 3.8362 3.0215 -0.0011 7 6 5.2078 3.2800 -0.0011 8 6 5.6610 4.5830 -0.0011 9 6 4.7591 5.6323 -0.0006 10 6 5.2615 7.0532 0.0000 11 7 5.4241 7.5142 -1.3811 12 16 5.6015 9.1296 -1.6993 13 8 5.7048 9.1987 -3.1148 14 8 4.5188 9.7429 -1.0129 15 6 7.1800 9.5732 -0.9234 16 6 7.4596 11.0603 -1.1499 17 6 8.7713 11.4286 -0.5058 18 1 9.3480 10.6772 0.0128 19 6 9.2355 12.7248 -0.5796 20 7 8.5334 13.6398 -1.2116 21 14 10.8617 13.1812 0.2181 22 1 11.9629 12.9945 -0.7606 23 1 10.8196 14.6012 0.6507 24 1 11.0957 12.3109 1.3984 25 6 3.3983 5.3830 0.0048 26 6 2.9318 4.0847 -0.0009 27 1 -0.3633 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.3880 2.1186 -0.0004 33 1 5.9128 2.4618 -0.0011 34 1 6.7220 4.7844 -0.0015 35 1 4.5435 7.6921 0.5141 36 1 6.2218 7.0989 0.5137 37 1 5.4279 6.8732 -2.1090 38 1 7.1279 9.3726 0.1468 39 1 7.9813 8.9811 -1.3655 40 1 7.5115 11.2612 -2.2200 41 1 6.6583 11.6522 -0.7075 42 1 8.8599 14.5517 -1.2632 43 1 2.6996 6.2065 0.0094 44 1 1.8692 3.8914 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111329010.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:19 Heat of formation + Delta-G solvation = -99.516871 kcal Electronic energy + Delta-G solvation = -25898.247581 eV Core-core repulsion = 21942.056629 eV Total energy + Delta-G solvation = -3956.190952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.61776 -39.01281 -36.64015 -35.79277 -35.55980 -35.32298 -33.91397 -32.07359 -31.32656 -31.18285 -30.39205 -26.48276 -25.62367 -23.80363 -23.03275 -22.35796 -21.69570 -20.74390 -19.01210 -18.42028 -17.56568 -16.89346 -16.69518 -16.21565 -15.98958 -15.61539 -15.35562 -15.22638 -15.11159 -14.61537 -14.56032 -14.39831 -14.00978 -13.65519 -13.45009 -13.23698 -13.01231 -12.88912 -12.52638 -12.38745 -12.22202 -11.99758 -11.77702 -11.63466 -11.55181 -11.46832 -11.36969 -11.09752 -10.98336 -10.44879 -10.40635 -10.34594 -9.84761 -9.61499 -9.55674 -9.36136 -9.20980 -9.05526 -8.52024 -6.14261 -4.19904 0.34766 0.80023 1.00930 2.44878 2.69757 3.12858 3.24991 3.31458 3.33841 3.53980 4.13617 4.22653 4.34778 4.35649 4.41138 4.53231 4.57010 4.57716 4.70728 4.81220 4.94688 4.99087 5.16515 5.21124 5.27965 5.32482 5.37858 5.44982 5.51972 5.57962 5.63200 5.66206 5.82105 5.88315 5.94339 5.98247 6.19638 6.45846 6.48955 7.00828 7.01628 7.27986 7.34008 7.77361 7.78675 8.15432 8.83538 9.45035 10.96697 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026058 B = 0.001864 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.271050 B =15021.494228 C =15664.970584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.114 3.886 3 N -0.729 5.729 4 C 0.559 3.441 5 O -0.537 6.537 6 C -0.137 4.137 7 C -0.060 4.060 8 C -0.110 4.110 9 C -0.066 4.066 10 C 0.151 3.849 11 N -1.124 6.124 12 S 2.594 3.406 13 O -0.965 6.965 14 O -0.966 6.966 15 C -0.589 4.589 16 C 0.027 3.973 17 C -0.521 4.521 18 H 0.061 0.939 19 C 0.058 3.942 20 N -0.890 5.890 21 Si 0.900 3.100 22 H -0.279 1.279 23 H -0.284 1.284 24 H -0.273 1.273 25 C -0.108 4.108 26 C -0.088 4.088 27 H 0.063 0.937 28 H 0.075 0.925 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.401 0.599 33 H 0.137 0.863 34 H 0.136 0.864 35 H 0.092 0.908 36 H 0.078 0.922 37 H 0.414 0.586 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.265 0.735 43 H 0.135 0.865 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.675 -24.751 4.124 29.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.010 4.010 3 N -0.383 5.383 4 C 0.347 3.653 5 O -0.415 6.415 6 C -0.140 4.140 7 C -0.079 4.079 8 C -0.129 4.129 9 C -0.067 4.067 10 C 0.025 3.975 11 N -0.881 5.881 12 S 2.691 3.309 13 O -0.956 6.956 14 O -0.956 6.956 15 C -0.723 4.723 16 C -0.012 4.012 17 C -0.561 4.561 18 H 0.080 0.920 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.205 1.205 23 H -0.210 1.210 24 H -0.198 1.198 25 C -0.126 4.126 26 C -0.107 4.107 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.236 0.764 33 H 0.155 0.845 34 H 0.154 0.846 35 H 0.110 0.890 36 H 0.096 0.904 37 H 0.247 0.753 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.075 0.925 43 H 0.153 0.847 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -14.796 -24.599 3.740 28.949 hybrid contribution 1.076 0.164 0.457 1.180 sum -13.720 -24.435 4.197 28.336 Atomic orbital electron populations 1.22021 0.94236 1.03451 1.02688 1.21332 0.94376 0.82635 1.02626 1.45986 1.07045 1.09231 1.75994 1.18346 0.82182 0.88813 0.75950 1.90780 1.55365 1.45803 1.49524 1.19923 0.94798 0.92386 1.06909 1.21273 0.94299 0.97237 0.95095 1.21179 1.00361 0.91643 0.99710 1.20134 0.93666 0.95140 0.97794 1.20264 1.01833 0.91949 0.83462 1.55886 1.91343 1.27814 1.13089 1.05557 0.78170 0.72254 0.74879 1.93560 1.88166 1.84731 1.29117 1.93539 1.51171 1.74766 1.76137 1.30445 1.18588 1.10997 1.12228 1.18971 0.99346 0.84008 0.98855 1.21002 1.04598 0.94919 1.35551 0.92032 1.25066 0.97688 0.96432 0.95280 1.69952 1.38219 1.02786 1.41825 0.86468 0.83401 0.77796 0.79593 1.20479 1.21014 1.19779 1.21126 0.95296 0.96811 0.99405 1.21255 0.98971 0.92289 0.98192 0.91829 0.90596 0.91850 0.91302 0.91306 0.76359 0.84469 0.84618 0.88967 0.90369 0.75295 0.86281 0.86032 0.94820 0.94773 0.92526 0.84698 0.85629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.50 10.03 37.16 0.37 -0.13 16 2 C 0.11 0.65 6.39 -4.04 -0.03 0.62 16 3 N -0.73 -4.82 5.51 -61.25 -0.34 -5.16 16 4 C 0.56 5.54 7.77 -12.33 -0.10 5.45 16 5 O -0.54 -7.24 16.35 5.32 0.09 -7.15 16 6 C -0.14 -1.23 5.87 -104.97 -0.62 -1.85 16 7 C -0.06 -0.56 9.60 -39.19 -0.38 -0.93 16 8 C -0.11 -0.94 9.68 -39.64 -0.38 -1.32 16 9 C -0.07 -0.58 5.28 -104.53 -0.55 -1.13 16 10 C 0.15 1.47 6.25 -5.19 -0.03 1.44 16 11 N -1.12 -13.09 5.88 -11.65 -0.07 -13.16 16 12 S 2.59 43.05 5.46 -107.50 -0.59 42.47 16 13 O -0.97 -19.21 18.08 -57.54 -1.04 -20.25 16 14 O -0.97 -18.73 17.50 -57.54 -1.01 -19.73 16 15 C -0.59 -10.58 6.01 37.16 0.22 -10.35 16 16 C 0.03 0.68 4.98 -27.88 -0.14 0.54 16 17 C -0.52 -14.13 9.11 -34.44 -0.31 -14.45 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.14 13.29 55.43 0.74 -25.40 16 21 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 24 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 25 C -0.11 -0.88 9.68 -39.64 -0.38 -1.26 16 26 C -0.09 -0.64 9.54 -39.18 -0.37 -1.01 16 27 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 30 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.40 1.62 6.51 -40.82 -0.27 1.36 16 33 H 0.14 1.26 7.65 -52.48 -0.40 0.86 16 34 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.09 0.91 7.63 -51.93 -0.40 0.51 16 36 H 0.08 0.63 8.08 -51.93 -0.42 0.21 16 37 H 0.41 4.23 8.61 -34.47 -0.30 3.93 16 38 H 0.12 1.87 8.14 -51.92 -0.42 1.44 16 39 H 0.12 1.96 8.14 -51.92 -0.42 1.54 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.27 7.30 8.31 -40.82 -0.34 6.97 16 43 H 0.14 0.97 8.06 -52.49 -0.42 0.55 16 44 H 0.13 0.53 6.41 -52.49 -0.34 0.20 16 LS Contribution 388.89 15.07 5.86 5.86 Total: -1.00 -37.46 388.89 -10.48 -47.94 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -6.31 Total: 1.53 kcal Atomic # 6 Polarization: -20.08 SS G_CDS: -2.79 Total: -22.87 kcal Atomic # 7 Polarization: -44.05 SS G_CDS: 0.33 Total: -43.72 kcal Atomic # 8 Polarization: -45.18 SS G_CDS: -1.96 Total: -47.14 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 43.05 SS G_CDS: -0.59 Total: 42.47 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -37.46 -10.48 -47.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111329010.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.579 kcal (2) G-P(sol) polarization free energy of solvation -37.460 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.039 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds