Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47237 * 2 1 4 4 C 1.46903 * 110.99573 * 72.23742 * 3 2 1 5 5 C 1.53004 * 109.46749 * 199.77008 * 4 3 2 6 6 O 1.42899 * 109.47036 * 65.15510 * 5 4 3 7 7 C 1.46896 * 111.00084 * 196.19485 * 3 2 1 8 8 C 1.50696 * 109.47368 * 66.04631 * 7 3 2 9 9 O 1.21286 * 120.00082 * 6.10864 * 8 7 3 10 10 N 1.34775 * 120.00242 * 186.10460 * 8 7 3 11 11 C 1.46498 * 120.00134 * 185.25870 * 10 8 7 12 12 C 1.50706 * 109.46910 * 90.00224 * 11 10 8 13 13 H 1.07991 * 120.00149 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99736 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99351 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00068 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47043 * 90.00157 * 16 14 12 18 18 H 1.48501 * 109.47033 * 210.00090 * 16 14 12 19 19 H 1.48499 * 109.47192 * 329.99969 * 16 14 12 20 20 C 1.39923 * 119.99799 * 5.25998 * 10 8 7 21 21 C 1.38898 * 120.06885 * 289.02588 * 20 10 8 22 22 C 1.38090 * 119.96042 * 179.72441 * 21 20 10 23 23 C 1.38289 * 120.08306 * 0.57568 * 22 21 20 24 24 C 1.38379 * 120.12228 * 359.70084 * 23 22 21 25 25 Cl 1.73605 * 119.97475 * 180.02562 * 24 23 22 26 26 C 1.38253 * 120.04813 * 359.97438 * 24 23 22 27 27 H 1.09002 * 109.47307 * 61.63620 * 1 2 3 28 28 H 1.08998 * 109.47191 * 181.64056 * 1 2 3 29 29 H 1.08998 * 109.46606 * 301.63387 * 1 2 3 30 30 H 1.08998 * 109.46702 * 240.00371 * 2 1 3 31 31 H 1.08995 * 109.47225 * 120.00127 * 2 1 3 32 32 H 1.09001 * 109.47393 * 319.77346 * 4 3 2 33 33 H 1.09001 * 109.46813 * 79.78084 * 4 3 2 34 34 H 1.08997 * 109.47041 * 185.15120 * 5 4 3 35 35 H 1.08999 * 109.47373 * 305.15832 * 5 4 3 36 36 H 0.96692 * 114.00436 * 184.98697 * 6 5 4 37 37 H 1.09003 * 109.47148 * 306.04547 * 7 3 2 38 38 H 1.09002 * 109.46919 * 186.04670 * 7 3 2 39 39 H 1.08998 * 109.47544 * 210.00059 * 11 10 8 40 40 H 1.08997 * 109.47376 * 329.99995 * 11 10 8 41 41 H 0.97004 * 119.99475 * 179.97438 * 15 14 12 42 42 H 1.08005 * 120.01401 * 0.02562 * 21 20 10 43 43 H 1.07996 * 119.96205 * 180.27023 * 22 21 20 44 44 H 1.07995 * 119.93557 * 179.72177 * 23 22 21 45 45 H 1.07995 * 120.03936 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8007 2.0207 1.3061 5 6 1.8490 3.5417 1.1474 6 8 0.7555 3.9706 0.3335 7 6 3.4369 1.4423 -0.3825 8 6 3.5878 1.0087 -1.8178 9 8 2.6035 0.7906 -2.4921 10 7 4.8164 0.8634 -2.3523 11 6 4.9638 0.5546 -3.7768 12 6 5.0492 1.8377 -4.5627 13 1 4.9984 2.7880 -4.0522 14 6 5.1912 1.7983 -5.9336 15 7 5.2652 2.9180 -6.6194 16 14 5.2784 0.1545 -6.8166 17 1 3.9088 -0.2773 -7.1950 18 1 6.1093 0.2931 -8.0396 19 1 5.8862 -0.8589 -5.9174 20 6 5.9513 1.0074 -1.5466 21 6 6.3147 2.2620 -1.0741 22 6 7.4319 2.4008 -0.2744 23 6 8.1962 1.2940 0.0468 24 6 7.8407 0.0433 -0.4268 25 17 8.8026 -1.3437 -0.0207 26 6 6.7194 -0.1027 -1.2223 27 1 -0.3634 0.4882 -0.9043 28 1 -0.3633 -1.0272 0.0294 29 1 -0.3632 0.5390 0.8750 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.8256 1.7266 1.6945 33 1 2.5791 1.7030 1.9999 34 1 1.7781 4.0118 2.1283 35 1 2.7882 3.8281 0.6742 36 1 0.7656 4.9152 0.1272 37 1 4.0139 0.7776 0.2604 38 1 3.8023 2.4632 -0.2710 39 1 5.8728 -0.0267 -3.9305 40 1 4.1025 -0.0217 -4.1146 41 1 5.3655 2.8902 -7.5838 42 1 5.7209 3.1278 -1.3280 43 1 7.7119 3.3756 0.0966 44 1 9.0721 1.4059 0.6686 45 1 6.4418 -1.0788 -1.5915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000120021821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = -43.082873 kcal Electronic energy + Delta-G solvation = -28228.636587 eV Core-core repulsion = 24272.849091 eV Total energy + Delta-G solvation = -3955.787497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.27238 -38.79017 -37.63279 -36.51823 -35.94460 -34.84296 -32.66877 -31.21928 -30.76269 -30.03456 -29.49027 -27.83539 -25.77447 -22.90997 -22.80297 -22.61402 -22.19125 -20.55717 -19.22561 -17.64566 -17.16853 -17.00967 -16.46885 -15.95225 -15.72454 -15.43897 -15.12865 -14.92392 -14.39080 -14.33891 -13.89636 -13.71064 -13.38331 -13.37170 -13.22258 -13.10671 -12.63741 -12.46521 -12.22058 -11.93399 -11.71809 -11.65471 -11.59060 -11.46005 -11.40242 -11.10438 -10.89021 -10.78910 -10.70282 -10.59102 -10.23190 -9.91763 -9.61112 -9.42947 -8.86752 -8.68024 -8.61651 -8.13192 -7.89200 -6.12652 -4.12036 1.17228 1.26223 2.07986 3.15675 3.26549 3.31763 3.34400 3.42735 3.64036 4.00396 4.28505 4.36267 4.75905 4.85915 5.00772 5.03924 5.10772 5.18518 5.21986 5.24618 5.26169 5.32378 5.40700 5.52300 5.53802 5.60261 5.68483 5.69539 5.70584 5.79391 5.99046 6.16026 6.20492 6.33431 6.44494 6.46645 6.57996 6.73235 6.83228 7.06949 7.15521 7.19547 7.52902 7.73643 8.09815 8.40140 8.80287 8.89720 9.46518 11.00448 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.006740 B = 0.005203 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4153.007209 B = 5380.495789 C = 7822.294745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.051 3.949 3 N -0.509 5.509 4 C 0.052 3.948 5 C 0.082 3.918 6 O -0.556 6.556 7 C 0.037 3.963 8 C 0.519 3.481 9 O -0.500 6.500 10 N -0.562 5.562 11 C 0.219 3.781 12 C -0.530 4.530 13 H 0.076 0.924 14 C 0.076 3.924 15 N -0.894 5.894 16 Si 0.873 3.127 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.266 1.266 20 C 0.176 3.824 21 C -0.113 4.113 22 C -0.096 4.096 23 C -0.121 4.121 24 C -0.024 4.024 25 Cl -0.077 7.077 26 C -0.119 4.119 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.049 0.951 30 H 0.085 0.915 31 H 0.024 0.976 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.044 0.956 35 H 0.044 0.956 36 H 0.373 0.627 37 H 0.054 0.946 38 H 0.101 0.899 39 H 0.031 0.969 40 H 0.043 0.957 41 H 0.265 0.735 42 H 0.133 0.867 43 H 0.134 0.866 44 H 0.131 0.869 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.536 -2.534 19.958 20.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.077 4.077 3 N -0.234 5.234 4 C -0.076 4.076 5 C 0.004 3.996 6 O -0.360 6.360 7 C -0.094 4.094 8 C 0.306 3.694 9 O -0.373 6.373 10 N -0.292 5.292 11 C 0.100 3.900 12 C -0.568 4.568 13 H 0.094 0.906 14 C -0.127 4.127 15 N -0.532 5.532 16 Si 0.700 3.300 17 H -0.197 1.197 18 H -0.209 1.209 19 H -0.191 1.191 20 C 0.084 3.916 21 C -0.133 4.133 22 C -0.115 4.115 23 C -0.140 4.140 24 C -0.051 4.051 25 Cl -0.048 7.048 26 C -0.139 4.139 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.068 0.932 30 H 0.103 0.897 31 H 0.043 0.957 32 H 0.104 0.896 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.219 0.781 37 H 0.072 0.928 38 H 0.119 0.881 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.075 0.925 42 H 0.151 0.849 43 H 0.152 0.848 44 H 0.149 0.851 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 0.610 -3.109 19.072 19.334 hybrid contribution 1.067 -0.598 -0.122 1.229 sum 1.677 -3.707 18.950 19.382 Atomic orbital electron populations 1.21693 0.94673 1.00682 1.02641 1.22149 0.96658 0.88129 1.00716 1.61585 1.15586 1.18150 1.28044 1.22221 1.01917 0.93588 0.89889 1.22152 0.89815 0.94460 0.93217 1.86609 1.47592 1.29162 1.72590 1.22097 0.90197 1.02680 0.94469 1.20220 0.82641 0.77835 0.88708 1.90691 1.36581 1.47739 1.62268 1.45654 1.02799 1.70288 1.10467 1.19808 0.97447 0.97918 0.74857 1.21226 1.51160 0.92504 0.91932 0.90609 1.24803 0.94356 0.96379 0.97165 1.69883 1.49649 1.26281 1.07370 0.86899 0.78807 0.84563 0.79776 1.19746 1.20930 1.19063 1.17508 0.89408 0.92027 0.92689 1.21586 0.97338 0.96904 0.97445 1.20971 0.94389 0.98384 0.97751 1.20992 1.00789 0.90730 1.01503 1.20666 0.94553 0.88497 1.01353 1.98358 1.71062 1.42636 1.92743 1.21198 0.94717 0.99622 0.98410 0.91311 0.92885 0.93205 0.89686 0.95748 0.89602 0.93460 0.93765 0.93770 0.78064 0.92783 0.88128 0.95069 0.93900 0.92474 0.84871 0.84808 0.85070 0.84793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 10.00 37.16 0.37 -1.47 16 2 C 0.05 0.73 5.26 -3.82 -0.02 0.71 16 3 N -0.51 -7.63 4.04 -236.07 -0.95 -8.59 16 4 C 0.05 0.60 5.21 -3.82 -0.02 0.58 16 5 C 0.08 0.88 7.24 37.16 0.27 1.15 16 6 O -0.56 -7.16 13.61 -35.23 -0.48 -7.64 16 7 C 0.04 0.56 3.85 -4.98 -0.02 0.54 16 8 C 0.52 10.39 6.99 -10.99 -0.08 10.31 16 9 O -0.50 -11.97 14.37 5.55 0.08 -11.89 16 10 N -0.56 -11.39 2.49 -114.74 -0.29 -11.67 16 11 C 0.22 5.28 4.23 -5.19 -0.02 5.26 16 12 C -0.53 -14.97 9.94 -34.44 -0.34 -15.31 16 13 H 0.08 2.33 8.06 -52.49 -0.42 1.90 16 14 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 15 N -0.89 -27.27 13.96 55.43 0.77 -26.50 16 16 Si 0.87 21.49 27.47 -169.99 -4.67 16.82 16 17 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.27 -6.19 6.54 56.52 0.37 -5.82 16 20 C 0.18 2.95 4.26 -83.70 -0.36 2.59 16 21 C -0.11 -1.64 8.62 -39.39 -0.34 -1.98 16 22 C -0.10 -1.10 10.04 -39.62 -0.40 -1.50 16 23 C -0.12 -1.38 9.83 -39.51 -0.39 -1.76 16 24 C -0.02 -0.31 6.32 -39.52 -0.25 -0.56 16 25 Cl -0.08 -0.91 28.95 -51.86 -1.50 -2.41 16 26 C -0.12 -1.79 9.58 -39.36 -0.38 -2.17 16 27 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 28 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.59 6.51 -51.93 -0.34 0.26 16 30 H 0.08 1.44 6.01 -51.93 -0.31 1.13 16 31 H 0.02 0.30 8.05 -51.93 -0.42 -0.12 16 32 H 0.09 0.97 6.24 -51.93 -0.32 0.64 16 33 H 0.05 0.45 8.00 -51.93 -0.42 0.04 16 34 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.04 0.47 6.66 -51.93 -0.35 0.13 16 36 H 0.37 3.23 9.12 45.56 0.42 3.64 16 37 H 0.05 0.73 7.81 -51.93 -0.41 0.32 16 38 H 0.10 1.41 5.68 -51.93 -0.30 1.11 16 39 H 0.03 0.73 7.00 -51.93 -0.36 0.37 16 40 H 0.04 1.10 6.78 -51.93 -0.35 0.74 16 41 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 42 H 0.13 1.98 7.84 -52.48 -0.41 1.56 16 43 H 0.13 1.15 8.06 -52.49 -0.42 0.72 16 44 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 45 H 0.13 1.99 8.06 -52.49 -0.42 1.57 16 LS Contribution 383.16 15.07 5.77 5.77 Total: -1.00 -34.41 383.16 -9.02 -43.43 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: -5.69 Total: 4.19 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: -2.07 Total: -1.51 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: -0.47 Total: -46.75 kcal Atomic # 8 Polarization: -19.13 SS G_CDS: -0.40 Total: -19.53 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -4.67 Total: 16.82 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.41 -9.02 -43.43 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120021821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.351 kcal (2) G-P(sol) polarization free energy of solvation -34.414 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds