Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46901 * 109.47237 * 2 1 4 4 C 1.46903 * 110.99573 * 72.23742 * 3 2 1 5 5 C 1.53004 * 109.46749 * 199.77008 * 4 3 2 6 6 O 1.42899 * 109.47036 * 65.15510 * 5 4 3 7 7 C 1.46896 * 111.00084 * 196.19485 * 3 2 1 8 8 C 1.50696 * 109.47368 * 66.04631 * 7 3 2 9 9 O 1.21286 * 120.00082 * 6.10864 * 8 7 3 10 10 N 1.34775 * 120.00242 * 186.10460 * 8 7 3 11 11 C 1.46498 * 120.00134 * 185.25870 * 10 8 7 12 12 C 1.50706 * 109.46910 * 90.00224 * 11 10 8 13 13 H 1.07991 * 120.00149 * 359.97438 * 12 11 10 14 14 C 1.37884 * 119.99736 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99351 * 179.97438 * 14 12 11 16 16 Si 1.86795 * 120.00068 * 359.97438 * 14 12 11 17 17 H 1.48502 * 109.47043 * 90.00157 * 16 14 12 18 18 H 1.48501 * 109.47033 * 210.00090 * 16 14 12 19 19 H 1.48499 * 109.47192 * 329.99969 * 16 14 12 20 20 C 1.39923 * 119.99799 * 5.25998 * 10 8 7 21 21 C 1.38898 * 120.06885 * 289.02588 * 20 10 8 22 22 C 1.38090 * 119.96042 * 179.72441 * 21 20 10 23 23 C 1.38289 * 120.08306 * 0.57568 * 22 21 20 24 24 C 1.38379 * 120.12228 * 359.70084 * 23 22 21 25 25 Cl 1.73605 * 119.97475 * 180.02562 * 24 23 22 26 26 C 1.38253 * 120.04813 * 359.97438 * 24 23 22 27 27 H 1.09002 * 109.47307 * 61.63620 * 1 2 3 28 28 H 1.08998 * 109.47191 * 181.64056 * 1 2 3 29 29 H 1.08998 * 109.46606 * 301.63387 * 1 2 3 30 30 H 1.08998 * 109.46702 * 240.00371 * 2 1 3 31 31 H 1.08995 * 109.47225 * 120.00127 * 2 1 3 32 32 H 1.09001 * 109.47393 * 319.77346 * 4 3 2 33 33 H 1.09001 * 109.46813 * 79.78084 * 4 3 2 34 34 H 1.08997 * 109.47041 * 185.15120 * 5 4 3 35 35 H 1.08999 * 109.47373 * 305.15832 * 5 4 3 36 36 H 0.96692 * 114.00436 * 184.98697 * 6 5 4 37 37 H 1.09003 * 109.47148 * 306.04547 * 7 3 2 38 38 H 1.09002 * 109.46919 * 186.04670 * 7 3 2 39 39 H 1.08998 * 109.47544 * 210.00059 * 11 10 8 40 40 H 1.08997 * 109.47376 * 329.99995 * 11 10 8 41 41 H 0.97004 * 119.99475 * 179.97438 * 15 14 12 42 42 H 1.08005 * 120.01401 * 0.02562 * 21 20 10 43 43 H 1.07996 * 119.96205 * 180.27023 * 22 21 20 44 44 H 1.07995 * 119.93557 * 179.72177 * 23 22 21 45 45 H 1.07995 * 120.03936 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8007 2.0207 1.3061 5 6 1.8490 3.5417 1.1474 6 8 0.7555 3.9706 0.3335 7 6 3.4369 1.4423 -0.3825 8 6 3.5878 1.0087 -1.8178 9 8 2.6035 0.7906 -2.4921 10 7 4.8164 0.8634 -2.3523 11 6 4.9638 0.5546 -3.7768 12 6 5.0492 1.8377 -4.5627 13 1 4.9984 2.7880 -4.0522 14 6 5.1912 1.7983 -5.9336 15 7 5.2652 2.9180 -6.6194 16 14 5.2784 0.1545 -6.8166 17 1 3.9088 -0.2773 -7.1950 18 1 6.1093 0.2931 -8.0396 19 1 5.8862 -0.8589 -5.9174 20 6 5.9513 1.0074 -1.5466 21 6 6.3147 2.2620 -1.0741 22 6 7.4319 2.4008 -0.2744 23 6 8.1962 1.2940 0.0468 24 6 7.8407 0.0433 -0.4268 25 17 8.8026 -1.3437 -0.0207 26 6 6.7194 -0.1027 -1.2223 27 1 -0.3634 0.4882 -0.9043 28 1 -0.3633 -1.0272 0.0294 29 1 -0.3632 0.5390 0.8750 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 0.8256 1.7266 1.6945 33 1 2.5791 1.7030 1.9999 34 1 1.7781 4.0118 2.1283 35 1 2.7882 3.8281 0.6742 36 1 0.7656 4.9152 0.1272 37 1 4.0139 0.7776 0.2604 38 1 3.8023 2.4632 -0.2710 39 1 5.8728 -0.0267 -3.9305 40 1 4.1025 -0.0217 -4.1146 41 1 5.3655 2.8902 -7.5838 42 1 5.7209 3.1278 -1.3280 43 1 7.7119 3.3756 0.0966 44 1 9.0721 1.4059 0.6686 45 1 6.4418 -1.0788 -1.5915 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000120021821.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = -68.134789 kcal Electronic energy + Delta-G solvation = -28229.722920 eV Core-core repulsion = 24272.849091 eV Total energy + Delta-G solvation = -3956.873829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.64085 -39.95168 -38.77740 -37.56163 -36.97114 -36.34143 -34.76797 -32.36283 -31.81514 -31.50164 -30.59278 -29.40845 -27.08186 -24.46816 -23.93602 -23.70017 -23.53832 -21.67445 -20.56227 -19.15692 -18.82373 -18.22207 -17.70823 -17.27928 -17.01608 -16.60601 -16.34456 -16.10051 -16.06149 -15.58421 -15.22892 -14.72921 -14.64467 -14.51552 -14.43328 -14.32746 -14.18371 -13.85986 -13.66762 -13.33898 -13.10463 -12.80849 -12.70111 -12.68981 -12.57932 -12.50719 -12.41801 -12.14199 -11.91239 -11.83026 -11.75240 -11.71408 -10.90957 -10.86092 -10.76659 -10.14510 -9.81887 -9.38770 -9.20314 -8.36793 -6.41419 0.08949 0.20248 1.07320 1.28986 1.32606 1.40098 1.64012 2.01494 2.27146 2.56571 2.89217 2.97335 3.48188 3.53673 3.86760 4.03413 4.06359 4.10944 4.12700 4.17608 4.23732 4.36176 4.43349 4.51002 4.54650 4.62334 4.64018 4.67646 4.70475 4.76620 4.78411 4.82846 5.00889 5.12742 5.16041 5.29061 5.31359 5.35311 5.37359 5.57151 5.73653 5.97064 6.15175 6.19122 6.58530 6.60506 7.02151 7.16926 7.30751 8.79661 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.006740 B = 0.005203 C = 0.003579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4153.007209 B = 5380.495789 C = 7822.294745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.052 3.948 3 N -0.536 5.536 4 C 0.049 3.951 5 C 0.078 3.922 6 O -0.586 6.586 7 C 0.055 3.945 8 C 0.510 3.490 9 O -0.553 6.553 10 N -0.565 5.565 11 C 0.230 3.770 12 C -0.533 4.533 13 H 0.035 0.965 14 C 0.018 3.982 15 N -0.939 5.939 16 Si 0.938 3.062 17 H -0.274 1.274 18 H -0.272 1.272 19 H -0.243 1.243 20 C 0.142 3.858 21 C -0.122 4.122 22 C -0.080 4.080 23 C -0.105 4.105 24 C -0.026 4.026 25 Cl -0.064 7.064 26 C -0.126 4.126 27 H 0.035 0.965 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.075 0.925 34 H 0.077 0.923 35 H 0.041 0.959 36 H 0.388 0.612 37 H 0.077 0.923 38 H 0.112 0.888 39 H 0.042 0.958 40 H 0.025 0.975 41 H 0.269 0.731 42 H 0.121 0.879 43 H 0.171 0.829 44 H 0.166 0.834 45 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.487 -3.269 22.903 23.396 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.076 4.076 3 N -0.262 5.262 4 C -0.077 4.077 5 C 0.000 4.000 6 O -0.393 6.393 7 C -0.076 4.076 8 C 0.300 3.700 9 O -0.430 6.430 10 N -0.294 5.294 11 C 0.109 3.891 12 C -0.571 4.571 13 H 0.053 0.947 14 C -0.181 4.181 15 N -0.579 5.579 16 Si 0.761 3.239 17 H -0.200 1.200 18 H -0.197 1.197 19 H -0.167 1.167 20 C 0.051 3.949 21 C -0.142 4.142 22 C -0.099 4.099 23 C -0.123 4.123 24 C -0.053 4.053 25 Cl -0.035 7.035 26 C -0.147 4.147 27 H 0.054 0.946 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.059 0.941 36 H 0.236 0.764 37 H 0.094 0.906 38 H 0.130 0.870 39 H 0.060 0.940 40 H 0.043 0.957 41 H 0.078 0.922 42 H 0.140 0.860 43 H 0.189 0.811 44 H 0.184 0.816 45 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.599 -3.832 22.075 22.555 hybrid contribution 0.519 -0.283 -0.938 1.108 sum 3.118 -4.115 21.137 21.759 Atomic orbital electron populations 1.21632 0.94050 1.01644 1.01628 1.22093 0.97171 0.88117 1.00187 1.61547 1.15289 1.18696 1.30639 1.22376 1.02985 0.93836 0.88548 1.22322 0.89029 0.94195 0.94461 1.86560 1.48658 1.30766 1.73339 1.21933 0.91123 1.03414 0.91082 1.21187 0.81790 0.76539 0.90529 1.90653 1.38227 1.50117 1.63990 1.45527 1.04478 1.70046 1.09321 1.19388 0.96841 0.95577 0.77323 1.21422 1.50562 0.92644 0.92488 0.94677 1.25720 0.93955 1.00364 0.98066 1.70023 1.51170 1.28805 1.07878 0.85852 0.78903 0.80141 0.78978 1.19959 1.19744 1.16669 1.17700 0.89318 0.93642 0.94235 1.21607 0.98593 0.95608 0.98406 1.21328 0.92458 1.00203 0.95887 1.21415 1.01085 0.89591 1.00238 1.20773 0.93992 0.89720 1.00861 1.98367 1.70441 1.42200 1.92519 1.21135 0.95425 0.98843 0.99272 0.94577 0.91137 0.91626 0.93067 0.93179 0.89280 0.90752 0.90502 0.94073 0.76391 0.90564 0.86989 0.94002 0.95687 0.92202 0.86049 0.81116 0.81646 0.85425 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.48 10.00 71.98 0.72 -2.76 16 2 C 0.05 1.48 5.26 86.30 0.45 1.94 16 3 N -0.54 -15.90 4.04 -900.79 -3.64 -19.54 16 4 C 0.05 1.04 5.21 86.30 0.45 1.49 16 5 C 0.08 1.53 7.24 71.98 0.52 2.05 16 6 O -0.59 -14.85 13.61 -148.98 -2.03 -16.87 16 7 C 0.06 1.67 3.85 85.56 0.33 2.00 16 8 C 0.51 21.31 6.99 87.66 0.61 21.92 16 9 O -0.55 -28.20 14.37 -3.05 -0.04 -28.25 16 10 N -0.56 -23.68 2.49 -635.33 -1.58 -25.26 16 11 C 0.23 11.47 4.23 85.64 0.36 11.83 16 12 C -0.53 -31.46 9.94 25.60 0.25 -31.21 16 13 H 0.03 2.29 8.06 -2.92 -0.02 2.27 16 14 C 0.02 1.05 5.47 84.66 0.46 1.51 16 15 N -0.94 -59.28 13.96 21.45 0.30 -58.98 16 16 Si 0.94 45.08 27.47 68.60 1.88 46.96 16 17 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.24 -10.69 6.54 99.48 0.65 -10.04 16 20 C 0.14 4.73 4.26 38.15 0.16 4.90 16 21 C -0.12 -3.44 8.62 22.39 0.19 -3.25 16 22 C -0.08 -1.56 10.04 22.25 0.22 -1.34 16 23 C -0.10 -1.95 9.83 22.32 0.22 -1.73 16 24 C -0.03 -0.61 6.32 22.31 0.14 -0.47 16 25 Cl -0.06 -1.34 28.95 -2.72 -0.08 -1.42 16 26 C -0.13 -3.67 9.58 22.42 0.21 -3.45 16 27 H 0.03 1.16 8.14 -2.39 -0.02 1.15 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 1.49 6.51 -2.39 -0.02 1.48 16 30 H 0.05 1.81 6.01 -2.39 -0.01 1.80 16 31 H 0.05 1.15 8.05 -2.39 -0.02 1.13 16 32 H 0.09 1.81 6.24 -2.39 -0.01 1.79 16 33 H 0.07 1.16 8.00 -2.39 -0.02 1.14 16 34 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.04 0.82 6.66 -2.39 -0.02 0.80 16 36 H 0.39 6.62 9.12 -74.06 -0.68 5.95 16 37 H 0.08 1.94 7.81 -2.39 -0.02 1.93 16 38 H 0.11 3.09 5.68 -2.39 -0.01 3.07 16 39 H 0.04 1.99 7.00 -2.39 -0.02 1.97 16 40 H 0.03 1.34 6.78 -2.39 -0.02 1.32 16 41 H 0.27 15.80 8.31 -92.71 -0.77 15.03 16 42 H 0.12 3.65 7.84 -2.91 -0.02 3.62 16 43 H 0.17 2.09 8.06 -2.91 -0.02 2.06 16 44 H 0.17 2.01 8.06 -2.91 -0.02 1.99 16 45 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 Total: -1.00 -79.90 383.16 0.41 -79.49 By element: Atomic # 1 Polarization: 20.16 SS G_CDS: 0.28 Total: 20.44 kcal Atomic # 6 Polarization: -1.89 SS G_CDS: 5.32 Total: 3.43 kcal Atomic # 7 Polarization: -98.86 SS G_CDS: -4.92 Total: -103.78 kcal Atomic # 8 Polarization: -43.05 SS G_CDS: -2.07 Total: -45.12 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.88 Total: 46.96 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.08 Total: -1.42 kcal Total: -79.90 0.41 -79.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000120021821.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.356 kcal (2) G-P(sol) polarization free energy of solvation -79.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds