Wall clock time and date at job start Sat Apr 11 2020 05:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.46895 * 110.99749 * 58.95710 * 12 2 1 14 14 C 1.46901 * 110.99984 * 295.00215 * 12 2 1 15 15 C 1.50700 * 109.47017 * 190.00287 * 14 12 2 16 16 O 1.21273 * 119.99976 * 359.97438 * 15 14 12 17 17 N 1.34778 * 119.99846 * 180.02562 * 15 14 12 18 18 C 1.46500 * 119.99729 * 179.97438 * 17 15 14 19 19 C 1.53006 * 109.46887 * 179.97438 * 18 17 15 20 20 O 1.42893 * 109.46983 * 65.00096 * 19 18 17 21 21 C 1.35925 * 117.00087 * 179.97438 * 20 19 18 22 22 C 1.38722 * 120.03902 * 359.72311 * 21 20 19 23 23 C 1.38148 * 119.95512 * 179.79431 * 22 21 20 24 24 C 1.38368 * 120.04035 * 0.45894 * 23 22 21 25 25 Cl 1.73598 * 119.95340 * 179.77020 * 24 23 22 26 26 C 1.38360 * 120.08621 * 359.79372 * 24 23 22 27 27 C 1.38141 * 120.04564 * 359.97438 * 26 24 23 28 28 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 30 30 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.08998 * 109.47176 * 60.00348 * 13 12 2 33 33 H 1.09001 * 109.46775 * 180.02562 * 13 12 2 34 34 H 1.09003 * 109.47375 * 299.99556 * 13 12 2 35 35 H 1.09007 * 109.47082 * 310.00168 * 14 12 2 36 36 H 1.09000 * 109.47389 * 69.99835 * 14 12 2 37 37 H 0.96999 * 119.99932 * 359.97438 * 17 15 14 38 38 H 1.08990 * 109.47120 * 299.99491 * 18 17 15 39 39 H 1.09003 * 109.47163 * 60.00075 * 18 17 15 40 40 H 1.08996 * 109.46865 * 184.99847 * 19 18 17 41 41 H 1.08998 * 109.47086 * 305.00081 * 19 18 17 42 42 H 1.08001 * 120.02622 * 0.02562 * 22 21 20 43 43 H 1.08000 * 119.97824 * 180.23243 * 23 22 21 44 44 H 1.08009 * 119.97711 * 179.97438 * 26 24 23 45 45 H 1.07997 * 120.02593 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.5284 -2.0760 1.2460 14 6 1.6487 0.0393 2.4181 15 6 2.3679 -0.5569 3.6006 16 8 3.1155 -1.4988 3.4437 17 7 2.1795 -0.0439 4.8326 18 6 2.8783 -0.6239 5.9822 19 6 2.4919 0.1383 7.2514 20 8 1.1013 -0.0541 7.5178 21 6 0.5932 0.5599 8.6189 22 6 1.4178 1.3268 9.4290 23 6 0.8986 1.9536 10.5453 24 6 -0.4408 1.8090 10.8608 25 17 -1.0895 2.5927 12.2674 26 6 -1.2637 1.0402 10.0569 27 6 -0.7493 0.4158 8.9372 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 0.7088 1.1611 -3.4845 32 1 1.8764 -2.6150 0.3648 33 1 1.9053 -2.5654 2.1441 34 1 0.4385 -2.0742 1.2640 35 1 1.9297 1.0872 2.3124 36 1 0.5722 -0.0344 2.5726 37 1 1.5812 0.7092 4.9581 38 1 2.5972 -1.6716 6.0875 39 1 3.9548 -0.5501 5.8281 40 1 3.0778 -0.2344 8.0915 41 1 2.6916 1.2008 7.1121 42 1 2.4641 1.4370 9.1851 43 1 1.5394 2.5538 11.1742 44 1 -2.3089 0.9281 10.3051 45 1 -1.3918 -0.1846 8.3102 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000129616190.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:22 Heat of formation + Delta-G solvation = -62.864636 kcal Electronic energy + Delta-G solvation = -26145.553809 eV Core-core repulsion = 22188.908511 eV Total energy + Delta-G solvation = -3956.645298 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.29801 -40.74927 -38.87634 -38.33944 -37.18107 -35.76882 -34.66621 -32.30104 -31.69969 -30.82107 -30.04135 -28.65888 -27.19641 -25.86292 -24.62444 -23.54903 -22.60468 -21.84829 -20.88203 -19.42223 -18.46549 -17.92502 -17.66737 -17.41628 -17.03278 -16.64521 -16.48530 -16.32945 -15.80059 -15.60505 -15.20312 -15.06942 -14.61763 -14.53739 -14.35765 -14.24225 -14.08247 -13.80867 -13.36564 -13.21584 -12.95775 -12.89378 -12.73018 -12.64504 -12.59745 -12.53295 -12.22493 -12.18143 -12.00893 -11.87900 -11.69022 -11.62277 -10.97616 -10.63307 -10.47154 -10.12971 -10.06499 -9.14454 -8.83235 -8.09818 -6.19307 0.19364 0.23141 1.20754 1.43920 1.45181 1.52914 1.70815 2.06296 2.18463 2.45796 2.60672 3.19463 3.48700 3.62722 3.80003 3.87883 3.98416 4.09368 4.11982 4.31380 4.35616 4.39503 4.46602 4.47221 4.62343 4.67351 4.72972 4.81793 4.85287 4.92643 4.93104 4.99055 5.13821 5.21171 5.22765 5.25754 5.47806 5.54126 5.56975 5.72177 5.81624 6.17704 6.32735 6.47307 6.50781 6.76946 6.92408 7.34534 7.49235 8.96006 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.026042 B = 0.001650 C = 0.001593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.912923 B =16964.543437 C =17578.024543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.215 3.785 3 H 0.016 0.984 4 C -0.517 4.517 5 H 0.051 0.949 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.957 3.043 9 H -0.282 1.282 10 H -0.275 1.275 11 H -0.274 1.274 12 N -0.535 5.535 13 C 0.043 3.957 14 C 0.034 3.966 15 C 0.519 3.481 16 O -0.562 6.562 17 N -0.719 5.719 18 C 0.123 3.877 19 C 0.050 3.950 20 O -0.323 6.323 21 C 0.127 3.873 22 C -0.197 4.197 23 C -0.073 4.073 24 C -0.087 4.087 25 Cl -0.076 7.076 26 C -0.074 4.074 27 C -0.151 4.151 28 H 0.029 0.971 29 H 0.034 0.966 30 H 0.064 0.936 31 H 0.262 0.738 32 H 0.050 0.950 33 H 0.066 0.934 34 H 0.017 0.983 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.414 0.586 38 H 0.064 0.936 39 H 0.095 0.905 40 H 0.105 0.895 41 H 0.093 0.907 42 H 0.160 0.840 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.291 3.943 30.707 31.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.108 3.892 3 H 0.033 0.967 4 C -0.556 4.556 5 H 0.069 0.931 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.783 3.217 9 H -0.207 1.207 10 H -0.201 1.201 11 H -0.199 1.199 12 N -0.259 5.259 13 C -0.105 4.105 14 C -0.097 4.097 15 C 0.306 3.694 16 O -0.440 6.440 17 N -0.374 5.374 18 C -0.001 4.001 19 C -0.025 4.025 20 O -0.237 6.237 21 C 0.081 3.919 22 C -0.215 4.215 23 C -0.092 4.092 24 C -0.114 4.114 25 Cl -0.048 7.048 26 C -0.093 4.093 27 C -0.170 4.170 28 H 0.048 0.952 29 H 0.053 0.947 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.069 0.931 33 H 0.085 0.915 34 H 0.036 0.964 35 H 0.124 0.876 36 H 0.087 0.913 37 H 0.250 0.750 38 H 0.082 0.918 39 H 0.113 0.887 40 H 0.123 0.877 41 H 0.111 0.889 42 H 0.178 0.822 43 H 0.169 0.831 44 H 0.169 0.831 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.449 3.308 30.423 30.637 hybrid contribution -0.889 0.164 -0.792 1.202 sum -2.338 3.472 29.631 29.925 Atomic orbital electron populations 1.22213 0.99843 0.99246 1.00569 1.19140 0.90361 0.93137 0.86557 0.96650 1.21328 1.30692 1.12467 0.91107 0.93126 1.25624 0.95428 0.95857 1.01570 1.69980 1.37670 1.23950 1.24070 0.85632 0.78631 0.78666 0.78794 1.20712 1.20088 1.19937 1.61930 1.60198 1.02512 1.01271 1.22205 0.96404 0.90332 1.01569 1.21992 0.98538 0.99719 0.89482 1.20745 0.81310 0.82770 0.84560 1.90636 1.38512 1.29270 1.85570 1.45829 1.48746 1.36811 1.06024 1.21444 0.97786 0.97925 0.82909 1.23263 0.79701 1.02031 0.97456 1.86136 1.27277 1.68645 1.41674 1.19236 0.93331 0.92536 0.86790 1.21478 1.01600 1.01647 0.96811 1.21100 0.93273 0.98126 0.96666 1.20977 0.94875 1.02738 0.92785 1.98368 1.86548 1.79737 1.40127 1.21048 1.00728 0.94680 0.92803 1.20596 0.93374 1.03980 0.99072 0.95206 0.94684 0.91761 0.92907 0.93091 0.91531 0.96414 0.87557 0.91258 0.75002 0.91766 0.88690 0.87704 0.88944 0.82226 0.83094 0.83107 0.83799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.51 8.28 71.98 0.60 -6.92 16 2 C 0.21 10.87 2.34 44.17 0.10 10.98 16 3 H 0.02 0.85 8.03 -2.38 -0.02 0.84 16 4 C -0.52 -29.04 7.94 25.60 0.20 -28.84 16 5 H 0.05 2.91 6.75 -2.91 -0.02 2.89 16 6 C 0.01 0.77 5.30 84.66 0.45 1.22 16 7 N -0.92 -52.18 11.32 21.45 0.24 -51.94 16 8 Si 0.96 44.38 29.54 68.60 2.03 46.41 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 12 N -0.54 -23.81 4.48 -906.03 -4.06 -27.87 16 13 C 0.04 1.85 8.53 127.69 1.09 2.94 16 14 C 0.03 1.16 4.89 85.56 0.42 1.57 16 15 C 0.52 16.27 7.52 87.66 0.66 16.93 16 16 O -0.56 -22.22 14.33 -3.01 -0.04 -22.26 16 17 N -0.72 -15.03 5.50 -463.06 -2.55 -17.58 16 18 C 0.12 2.02 6.06 86.38 0.52 2.54 16 19 C 0.05 0.49 4.87 71.98 0.35 0.84 16 20 O -0.32 -4.77 10.08 -92.70 -0.93 -5.71 16 21 C 0.13 1.76 6.69 22.50 0.15 1.91 16 22 C -0.20 -2.07 9.04 22.36 0.20 -1.87 16 23 C -0.07 -0.81 9.82 22.28 0.22 -0.59 16 24 C -0.09 -1.15 6.32 22.33 0.14 -1.01 16 25 Cl -0.08 -1.01 28.95 -2.72 -0.08 -1.09 16 26 C -0.07 -0.95 9.82 22.28 0.22 -0.73 16 27 C -0.15 -2.11 9.99 22.36 0.22 -1.88 16 28 H 0.03 1.38 6.38 -2.39 -0.02 1.36 16 29 H 0.03 1.40 6.75 -2.39 -0.02 1.39 16 30 H 0.06 3.38 6.07 -2.39 -0.01 3.36 16 31 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 32 H 0.05 2.36 6.53 -2.39 -0.02 2.35 16 33 H 0.07 2.76 5.82 -2.39 -0.01 2.75 16 34 H 0.02 0.72 6.28 -2.39 -0.01 0.71 16 35 H 0.11 3.34 8.00 -2.38 -0.02 3.32 16 36 H 0.07 2.16 6.94 -2.39 -0.02 2.14 16 37 H 0.41 6.62 8.47 -92.71 -0.79 5.83 16 38 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 39 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.11 0.57 7.65 -2.39 -0.02 0.55 16 41 H 0.09 0.59 7.67 -2.39 -0.02 0.57 16 42 H 0.16 0.87 6.30 -2.91 -0.02 0.85 16 43 H 0.15 1.13 8.06 -2.91 -0.02 1.10 16 44 H 0.15 1.45 8.06 -2.91 -0.02 1.42 16 45 H 0.14 1.82 8.06 -2.91 -0.02 1.79 16 Total: -1.00 -69.58 379.36 0.39 -69.19 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.24 Total: 13.77 kcal Atomic # 6 Polarization: -8.46 SS G_CDS: 5.55 Total: -2.91 kcal Atomic # 7 Polarization: -91.03 SS G_CDS: -6.36 Total: -97.39 kcal Atomic # 8 Polarization: -26.99 SS G_CDS: -0.98 Total: -27.97 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -0.08 Total: -1.09 kcal Total: -69.58 0.39 -69.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000129616190.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.321 kcal (2) G-P(sol) polarization free energy of solvation -69.575 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.865 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds