Wall clock time and date at job start Sat Apr 11 2020 05:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.46959 * 2 1 4 4 N 1.46498 * 109.47042 * 239.99964 * 2 1 3 5 5 S 1.65605 * 119.99929 * 95.00051 * 4 2 1 6 6 C 1.81389 * 104.45143 * 64.99904 * 5 4 2 7 7 O 1.42105 * 104.27283 * 308.92659 * 5 4 2 8 8 O 1.42102 * 104.27797 * 181.07402 * 5 4 2 9 9 C 1.50696 * 109.47333 * 120.00084 * 2 1 3 10 10 O 1.21283 * 120.00099 * 120.00260 * 9 2 1 11 11 N 1.34779 * 119.99952 * 299.99602 * 9 2 1 12 12 C 1.46501 * 120.00057 * 175.16436 * 11 9 2 13 13 H 1.09003 * 109.47481 * 326.57877 * 12 11 9 14 14 C 1.53010 * 109.46846 * 86.57359 * 12 11 9 15 15 C 1.50704 * 109.46837 * 185.71572 * 14 12 11 16 16 H 1.07994 * 120.00036 * 355.97480 * 15 14 12 17 17 C 1.37879 * 119.99466 * 175.96888 * 15 14 12 18 18 N 1.31515 * 119.99520 * 179.97438 * 17 15 14 19 19 Si 1.86794 * 120.00170 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47257 * 89.99836 * 19 17 15 21 21 H 1.48499 * 109.46951 * 209.99517 * 19 17 15 22 22 H 1.48499 * 109.47391 * 329.99420 * 19 17 15 23 23 C 1.50692 * 109.47389 * 206.57228 * 12 11 9 24 24 C 1.38233 * 119.99977 * 319.73174 * 23 12 11 25 25 C 1.38239 * 120.00102 * 179.80689 * 24 23 12 26 26 C 1.38237 * 119.99944 * 0.39907 * 25 24 23 27 27 C 1.38244 * 119.99761 * 359.85145 * 26 25 24 28 28 C 1.38228 * 120.00121 * 359.96094 * 27 26 25 29 29 H 1.09011 * 109.47204 * 299.99767 * 1 2 3 30 30 H 1.08996 * 109.47849 * 59.99679 * 1 2 3 31 31 H 1.08998 * 109.46953 * 180.02562 * 1 2 3 32 32 H 0.97001 * 120.00606 * 274.99970 * 4 2 1 33 33 H 1.09003 * 109.47548 * 300.00054 * 6 5 4 34 34 H 1.09004 * 109.47233 * 59.99935 * 6 5 4 35 35 H 1.09007 * 109.47308 * 180.02562 * 6 5 4 36 36 H 0.96999 * 120.00202 * 355.16837 * 11 9 2 37 37 H 1.09003 * 109.46872 * 305.71255 * 14 12 11 38 38 H 1.08997 * 109.46951 * 65.71632 * 14 12 11 39 39 H 0.97003 * 119.99908 * 180.02562 * 18 17 15 40 40 H 1.08001 * 120.00069 * 359.97438 * 24 23 12 41 41 H 1.07994 * 120.00576 * 180.22578 * 25 24 23 42 42 H 1.07994 * 120.00401 * 179.83450 * 26 25 24 43 43 H 1.08001 * 119.99642 * 179.97438 * 27 26 25 44 44 H 1.07999 * 120.00416 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0182 -0.6906 -1.1962 5 16 2.4121 0.1772 -2.5505 6 6 3.8311 1.1872 -2.0442 7 8 1.2749 0.9966 -2.7846 8 8 2.8121 -0.8075 -3.4937 9 6 2.0323 -0.7104 1.2304 10 8 2.7296 -1.6964 1.1191 11 7 1.7068 -0.2499 2.4545 12 6 2.1055 -0.9989 3.6488 13 1 2.0928 -2.0665 3.4293 14 6 3.5171 -0.5807 4.0654 15 6 3.9818 -1.4484 5.2066 16 1 3.3118 -2.1769 5.6386 17 6 5.2626 -1.3123 5.6988 18 7 5.6679 -2.0692 6.6950 19 14 6.4213 -0.0519 4.9518 20 1 6.2750 1.2407 5.6680 21 1 7.8212 -0.5313 5.0767 22 1 6.0889 0.1369 3.5169 23 6 1.1430 -0.7052 4.7705 24 6 0.6744 0.5813 4.9601 25 6 -0.2116 0.8500 5.9867 26 6 -0.6226 -0.1663 6.8287 27 6 -0.1498 -1.4520 6.6423 28 6 0.7331 -1.7214 5.6135 29 1 -0.3634 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 2.1109 -1.6562 -1.1950 33 1 3.5399 1.8343 -1.2167 34 1 4.6458 0.5362 -1.7269 35 1 4.1603 1.7986 -2.8845 36 1 1.2085 0.5774 2.5448 37 1 4.1952 -0.6982 3.2201 38 1 3.5085 0.4622 4.3821 39 1 6.5688 -1.9732 7.0416 40 1 0.9983 1.3761 4.3045 41 1 -0.5806 1.8544 6.1326 42 1 -1.3127 0.0440 7.6324 43 1 -0.4706 -2.2460 7.3005 44 1 1.1027 -2.7257 5.4680 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153133839.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:45 Heat of formation + Delta-G solvation = -112.520817 kcal Electronic energy + Delta-G solvation = -27819.079427 eV Core-core repulsion = 23862.324582 eV Total energy + Delta-G solvation = -3956.754845 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29415 -39.95088 -38.19328 -37.08859 -36.94013 -36.24477 -34.83236 -32.91432 -31.67022 -30.80083 -30.57965 -30.27986 -26.95738 -25.01071 -23.69897 -23.39711 -21.69855 -21.08085 -20.52636 -19.36113 -19.01516 -18.28961 -17.42835 -17.26837 -17.12709 -16.62173 -16.42872 -15.96189 -15.95320 -15.77492 -15.28951 -14.82072 -14.66188 -14.46626 -14.21470 -14.12795 -14.05164 -13.99501 -13.82740 -13.45000 -13.27761 -13.20915 -13.10517 -13.00201 -12.76515 -12.63891 -12.49183 -12.39211 -12.06397 -11.97536 -11.81104 -11.62660 -11.38972 -10.98008 -10.74790 -10.48259 -10.07421 -9.68074 -9.45286 -8.25847 -6.27823 -0.69676 0.56203 0.63270 1.31105 1.35302 1.44726 1.58890 1.61813 2.22874 2.35770 2.86765 3.00733 3.10927 3.24545 3.54234 3.83939 3.88114 4.01622 4.06599 4.07404 4.16699 4.26596 4.37111 4.38175 4.48339 4.69530 4.74127 4.83218 4.88229 4.92600 5.02327 5.06813 5.21665 5.22983 5.33089 5.36506 5.43645 5.65059 5.67071 5.72328 5.88910 5.92746 6.23889 6.30834 6.59703 6.78799 7.27072 7.35046 8.90367 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010431 B = 0.003753 C = 0.002990 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2683.627181 B = 7459.612404 C = 9362.423304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.138 3.862 3 H 0.146 0.854 4 N -1.107 6.107 5 S 2.630 3.370 6 C -0.664 4.664 7 O -0.977 6.977 8 O -0.999 6.999 9 C 0.501 3.499 10 O -0.571 6.571 11 N -0.706 5.706 12 C 0.206 3.794 13 H 0.059 0.941 14 C -0.006 4.006 15 C -0.514 4.514 16 H 0.045 0.955 17 C 0.008 3.992 18 N -0.949 5.949 19 Si 0.940 3.060 20 H -0.262 1.262 21 H -0.289 1.289 22 H -0.253 1.253 23 C -0.076 4.076 24 C -0.123 4.123 25 C -0.117 4.117 26 C -0.129 4.129 27 C -0.129 4.129 28 C -0.122 4.122 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.056 0.944 32 H 0.422 0.578 33 H 0.150 0.850 34 H 0.135 0.865 35 H 0.152 0.848 36 H 0.415 0.585 37 H 0.013 0.987 38 H 0.027 0.973 39 H 0.263 0.737 40 H 0.143 0.857 41 H 0.154 0.846 42 H 0.146 0.854 43 H 0.130 0.870 44 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.686 13.117 -11.989 21.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.026 3.974 3 H 0.163 0.837 4 N -0.865 5.865 5 S 2.726 3.274 6 C -0.817 4.817 7 O -0.968 6.968 8 O -0.990 6.990 9 C 0.286 3.714 10 O -0.449 6.449 11 N -0.359 5.359 12 C 0.101 3.899 13 H 0.077 0.923 14 C -0.044 4.044 15 C -0.552 4.552 16 H 0.063 0.937 17 C -0.189 4.189 18 N -0.591 5.591 19 Si 0.764 3.236 20 H -0.187 1.187 21 H -0.216 1.216 22 H -0.177 1.177 23 C -0.076 4.076 24 C -0.141 4.141 25 C -0.135 4.135 26 C -0.147 4.147 27 C -0.147 4.147 28 C -0.141 4.141 29 H 0.114 0.886 30 H 0.107 0.893 31 H 0.076 0.924 32 H 0.258 0.742 33 H 0.169 0.831 34 H 0.153 0.847 35 H 0.170 0.830 36 H 0.254 0.746 37 H 0.032 0.968 38 H 0.046 0.954 39 H 0.072 0.928 40 H 0.160 0.840 41 H 0.171 0.829 42 H 0.164 0.836 43 H 0.148 0.852 44 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.546 12.514 -12.818 21.870 hybrid contribution 1.528 -0.401 0.799 1.770 sum -11.018 12.113 -12.019 20.312 Atomic orbital electron populations 1.22302 0.91087 1.03707 1.05318 1.20823 0.97261 0.97182 0.82100 0.83691 1.55481 1.82143 1.20461 1.28459 1.04156 0.76648 0.74349 0.72282 1.30436 1.19912 1.16608 1.14743 1.93581 1.48216 1.70832 1.84125 1.93574 1.85141 1.59602 1.60639 1.21315 0.79575 0.84907 0.85555 1.90736 1.38571 1.28618 1.86971 1.46024 1.57547 1.27704 1.04663 1.19486 0.92769 0.95346 0.82309 0.92325 1.19788 0.92933 0.96544 0.95186 1.21297 0.98289 1.19884 1.15779 0.93675 1.25852 0.99912 0.97930 0.95181 1.70054 1.19097 1.41991 1.27909 0.85812 0.77817 0.79770 0.80162 1.18664 1.21558 1.17713 1.19764 0.96058 0.94921 0.96880 1.21122 0.98145 0.95119 0.99744 1.21437 0.97213 1.00312 0.94549 1.21446 1.00672 0.92462 1.00126 1.21312 0.97579 0.98431 0.97421 1.21026 0.97695 0.98782 0.96589 0.88605 0.89274 0.92443 0.74193 0.83146 0.84668 0.82996 0.74635 0.96840 0.95433 0.92772 0.83950 0.82851 0.83608 0.85202 0.88509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.42 71.98 0.68 -1.77 16 2 C 0.14 2.41 3.08 44.24 0.14 2.55 16 3 H 0.15 1.33 7.15 -2.39 -0.02 1.31 16 4 N -1.11 -21.28 5.15 -172.54 -0.89 -22.17 16 5 S 2.63 45.22 6.02 -56.49 -0.34 44.88 16 6 C -0.66 -6.65 10.78 113.37 1.22 -5.43 16 7 O -0.98 -20.44 17.11 -127.65 -2.18 -22.62 16 8 O -1.00 -25.78 18.08 -127.65 -2.31 -28.08 16 9 C 0.50 13.72 7.19 87.66 0.63 14.35 16 10 O -0.57 -21.57 15.68 -3.04 -0.05 -21.62 16 11 N -0.71 -18.62 4.87 -446.09 -2.17 -20.79 16 12 C 0.21 7.64 2.19 44.25 0.10 7.73 16 13 H 0.06 2.57 7.46 -2.39 -0.02 2.56 16 14 C -0.01 -0.28 3.82 29.85 0.11 -0.16 16 15 C -0.51 -28.81 9.19 25.60 0.24 -28.58 16 16 H 0.04 2.76 6.69 -2.91 -0.02 2.74 16 17 C 0.01 0.46 5.47 84.66 0.46 0.92 16 18 N -0.95 -59.35 13.96 21.45 0.30 -59.05 16 19 Si 0.94 44.08 27.55 68.60 1.89 45.97 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 H -0.29 -13.58 7.11 99.48 0.71 -12.87 16 22 H -0.25 -11.20 6.43 99.48 0.64 -10.56 16 23 C -0.08 -2.55 4.49 -19.87 -0.09 -2.64 16 24 C -0.12 -3.20 9.05 22.27 0.20 -2.99 16 25 C -0.12 -2.64 10.05 22.27 0.22 -2.41 16 26 C -0.13 -3.11 10.05 22.27 0.22 -2.89 16 27 C -0.13 -3.82 10.05 22.27 0.22 -3.60 16 28 C -0.12 -4.38 8.64 22.27 0.19 -4.18 16 29 H 0.10 0.97 7.68 -2.38 -0.02 0.96 16 30 H 0.09 1.30 7.42 -2.39 -0.02 1.28 16 31 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.42 9.25 8.17 -96.74 -0.79 8.46 16 33 H 0.15 0.87 7.44 -2.39 -0.02 0.86 16 34 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.42 7.31 6.46 -92.71 -0.60 6.71 16 37 H 0.01 0.64 6.92 -2.39 -0.02 0.63 16 38 H 0.03 1.16 7.76 -2.39 -0.02 1.14 16 39 H 0.26 15.48 8.31 -92.71 -0.77 14.71 16 40 H 0.14 2.76 6.91 -2.91 -0.02 2.74 16 41 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 42 H 0.15 2.56 8.06 -2.91 -0.02 2.54 16 43 H 0.13 3.34 8.06 -2.91 -0.02 3.31 16 44 H 0.10 3.81 7.83 -2.91 -0.02 3.79 16 Total: -1.00 -85.89 377.33 -1.62 -87.51 By element: Atomic # 1 Polarization: 25.51 SS G_CDS: -0.42 Total: 25.08 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 4.55 Total: -29.11 kcal Atomic # 7 Polarization: -99.25 SS G_CDS: -2.76 Total: -102.01 kcal Atomic # 8 Polarization: -67.78 SS G_CDS: -4.54 Total: -72.32 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 1.89 Total: 45.97 kcal Atomic # 16 Polarization: 45.22 SS G_CDS: -0.34 Total: 44.88 kcal Total: -85.89 -1.62 -87.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153133839.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.012 kcal (2) G-P(sol) polarization free energy of solvation -85.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds