Wall clock time and date at job start Sat Apr 11 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 N 1.46493 * 109.47395 * 120.00906 * 2 1 3 5 5 S 1.65605 * 119.99616 * 264.99771 * 4 2 1 6 6 C 1.81401 * 104.44827 * 65.00151 * 5 4 2 7 7 O 1.42100 * 104.27423 * 181.06966 * 5 4 2 8 8 O 1.42097 * 104.27830 * 308.92588 * 5 4 2 9 9 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 10 10 O 1.21283 * 119.99503 * 239.99651 * 9 2 1 11 11 N 1.34773 * 120.00081 * 59.72378 * 9 2 1 12 12 C 1.46506 * 119.99968 * 180.02562 * 11 9 2 13 13 H 1.08995 * 109.47035 * 34.99295 * 12 11 9 14 14 C 1.52995 * 109.47011 * 154.99680 * 12 11 9 15 15 C 1.50696 * 109.47334 * 294.99626 * 14 12 11 16 16 H 1.07998 * 120.00183 * 0.02562 * 15 14 12 17 17 C 1.37875 * 120.00106 * 180.02562 * 15 14 12 18 18 N 1.31515 * 119.99989 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00099 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47243 * 89.99824 * 19 17 15 21 21 H 1.48503 * 109.46887 * 210.00119 * 19 17 15 22 22 H 1.48508 * 109.46873 * 329.99643 * 19 17 15 23 23 C 1.50703 * 109.46573 * 274.99986 * 12 11 9 24 24 C 1.38236 * 119.99818 * 319.72035 * 23 12 11 25 25 C 1.38241 * 119.99646 * 179.81687 * 24 23 12 26 26 C 1.38234 * 119.99794 * 0.39820 * 25 24 23 27 27 C 1.38236 * 120.00105 * 359.85450 * 26 25 24 28 28 C 1.38231 * 119.99696 * 140.00121 * 23 12 11 29 29 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 30 30 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 31 31 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 32 32 H 0.96999 * 120.00897 * 84.99742 * 4 2 1 33 33 H 1.09003 * 109.47278 * 60.00326 * 6 5 4 34 34 H 1.09005 * 109.47087 * 179.97438 * 6 5 4 35 35 H 1.08995 * 109.46995 * 299.99565 * 6 5 4 36 36 H 0.96998 * 120.00525 * 359.97438 * 11 9 2 37 37 H 1.09001 * 109.47417 * 55.00278 * 14 12 11 38 38 H 1.09007 * 109.46847 * 174.99729 * 14 12 11 39 39 H 0.96999 * 119.99770 * 179.97438 * 18 17 15 40 40 H 1.08000 * 120.00181 * 0.02562 * 24 23 12 41 41 H 1.07994 * 119.99931 * 180.23205 * 25 24 23 42 42 H 1.08004 * 119.99696 * 179.83839 * 26 25 24 43 43 H 1.08003 * 119.99648 * 179.97438 * 27 26 25 44 44 H 1.08001 * 120.00355 * 359.97438 * 28 23 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6908 1.1960 5 16 2.4123 0.1770 2.5504 6 6 0.8408 0.8986 3.0985 7 8 2.8607 -0.8032 3.4763 8 8 3.2875 1.1904 2.0751 9 6 2.0323 -0.7102 -1.2306 10 8 2.7296 -1.6963 -1.1194 11 7 1.7021 -0.2529 -2.4546 12 6 2.1899 -0.9437 -3.6510 13 1 2.2309 -2.0160 -3.4600 14 6 1.2420 -0.6697 -4.8202 15 6 -0.1047 -1.2800 -4.5288 16 1 -0.2683 -1.8100 -3.6021 17 6 -1.1280 -1.1619 -5.4453 18 7 -0.9287 -0.5170 -6.5740 19 14 -2.7975 -1.9179 -5.0837 20 1 -3.6480 -0.9256 -4.3785 21 1 -3.4493 -2.3113 -6.3588 22 1 -2.6224 -3.1179 -4.2265 23 6 3.5688 -0.4414 -3.9937 24 6 3.8626 0.9044 -3.8785 25 6 5.1286 1.3645 -4.1893 26 6 6.0983 0.4800 -4.6230 27 6 5.8029 -0.8651 -4.7432 28 6 4.5381 -1.3258 -4.4287 29 1 -0.3633 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 2.1110 -1.6563 1.1947 33 1 0.1317 0.1006 3.3185 34 1 1.0078 1.4935 3.9965 35 1 0.4387 1.5350 2.3103 36 1 1.1408 0.5332 -2.5436 37 1 1.1319 0.4064 -4.9543 38 1 1.6509 -1.1092 -5.7301 39 1 -1.6485 -0.4343 -7.2189 40 1 3.1041 1.5959 -3.5426 41 1 5.3592 2.4154 -4.0958 42 1 7.0866 0.8399 -4.8683 43 1 6.5605 -1.5561 -5.0825 44 1 4.3073 -2.3767 -4.5226 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153133956.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:48 Heat of formation + Delta-G solvation = -117.104310 kcal Electronic energy + Delta-G solvation = -27935.212624 eV Core-core repulsion = 23978.259024 eV Total energy + Delta-G solvation = -3956.953601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21688 -39.86182 -38.18101 -37.07200 -36.97429 -36.29366 -34.71305 -32.74343 -31.71117 -30.79086 -30.45812 -30.03872 -26.83381 -25.10549 -23.78031 -23.35744 -21.77795 -21.11841 -20.51253 -19.18141 -18.66379 -18.07615 -17.57474 -17.31348 -17.13787 -16.73641 -16.38951 -16.27653 -15.85845 -15.70843 -15.07529 -14.71372 -14.56441 -14.36373 -14.18775 -14.10761 -13.90686 -13.82205 -13.67017 -13.46963 -13.21384 -13.15511 -13.10971 -12.90960 -12.82992 -12.60782 -12.55429 -12.43698 -12.13681 -11.95164 -11.87017 -11.57144 -11.30115 -10.96816 -10.57643 -10.43390 -9.97094 -9.75231 -9.51554 -8.16377 -6.26448 -0.68437 0.51296 0.56192 1.42025 1.45495 1.54552 1.65502 1.69572 2.34364 2.43114 2.91292 2.97554 3.18332 3.28497 3.60379 3.96216 3.99528 4.03994 4.08889 4.14252 4.20223 4.21477 4.32351 4.40213 4.49851 4.66557 4.74607 4.79064 4.79988 5.02424 5.05638 5.13353 5.20330 5.28826 5.34905 5.46868 5.61018 5.61705 5.64597 5.81387 5.91248 5.96463 6.17270 6.22821 6.70177 6.86551 7.33147 7.42820 8.94390 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.008283 B = 0.004329 C = 0.003062 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3379.709677 B = 6465.787145 C = 9142.901932 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.132 3.868 3 H 0.136 0.864 4 N -1.106 6.106 5 S 2.615 3.385 6 C -0.647 4.647 7 O -1.000 7.000 8 O -1.000 7.000 9 C 0.504 3.496 10 O -0.580 6.580 11 N -0.691 5.691 12 C 0.201 3.799 13 H 0.058 0.942 14 C 0.038 3.962 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.012 3.988 18 N -0.927 5.927 19 Si 0.955 3.045 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.272 1.272 23 C -0.099 4.099 24 C -0.122 4.122 25 C -0.126 4.126 26 C -0.131 4.131 27 C -0.126 4.126 28 C -0.134 4.134 29 H 0.108 0.892 30 H 0.086 0.914 31 H 0.063 0.937 32 H 0.421 0.579 33 H 0.155 0.845 34 H 0.152 0.848 35 H 0.156 0.844 36 H 0.412 0.588 37 H 0.015 0.985 38 H 0.000 1.000 39 H 0.263 0.737 40 H 0.126 0.874 41 H 0.146 0.854 42 H 0.149 0.851 43 H 0.142 0.858 44 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.933 7.317 15.033 16.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.021 3.979 3 H 0.154 0.846 4 N -0.864 5.864 5 S 2.713 3.287 6 C -0.802 4.802 7 O -0.991 6.991 8 O -0.990 6.990 9 C 0.290 3.710 10 O -0.460 6.460 11 N -0.341 5.341 12 C 0.095 3.905 13 H 0.077 0.923 14 C 0.001 3.999 15 C -0.563 4.563 16 H 0.076 0.924 17 C -0.187 4.187 18 N -0.567 5.567 19 Si 0.781 3.219 20 H -0.190 1.190 21 H -0.216 1.216 22 H -0.197 1.197 23 C -0.101 4.101 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.149 4.149 27 C -0.144 4.144 28 C -0.153 4.153 29 H 0.127 0.873 30 H 0.105 0.895 31 H 0.082 0.918 32 H 0.257 0.743 33 H 0.173 0.827 34 H 0.170 0.830 35 H 0.174 0.826 36 H 0.249 0.751 37 H 0.033 0.967 38 H 0.018 0.982 39 H 0.072 0.928 40 H 0.144 0.856 41 H 0.164 0.836 42 H 0.167 0.833 43 H 0.159 0.841 44 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 4.210 6.934 15.310 17.326 hybrid contribution -1.618 -0.804 -0.642 1.918 sum 2.592 6.129 14.668 16.107 Atomic orbital electron populations 1.22499 0.90531 1.04551 1.05829 1.20802 0.96992 0.97389 0.82695 0.84620 1.55343 1.84264 1.20598 1.26176 1.04500 0.78238 0.73516 0.72476 1.30417 1.20001 1.15186 1.14555 1.93564 1.81597 1.60391 1.63562 1.93565 1.64171 1.61437 1.79856 1.21190 0.79644 0.84600 0.85594 1.90646 1.39921 1.28322 1.87076 1.45816 1.51778 1.32079 1.04440 1.19722 0.89616 0.95345 0.85780 0.92340 1.19135 0.92777 0.96619 0.91419 1.21380 0.96329 1.34750 1.03810 0.92375 1.25764 1.02515 0.95652 0.94755 1.70079 1.34016 1.43235 1.09410 0.85596 0.79901 0.79019 0.77381 1.19013 1.21618 1.19693 1.20491 0.95763 0.94877 0.98929 1.21118 0.97793 0.94565 1.00496 1.21461 0.92901 1.00968 0.99043 1.21467 1.00443 0.93133 0.99857 1.21380 0.96114 0.96884 0.99978 1.21176 0.94204 0.99477 1.00424 0.87349 0.89503 0.91776 0.74326 0.82680 0.82964 0.82586 0.75131 0.96696 0.98162 0.92846 0.85606 0.83608 0.83299 0.84052 0.87001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.72 9.37 71.98 0.67 -2.04 16 2 C 0.13 2.85 3.22 44.25 0.14 3.00 16 3 H 0.14 2.33 7.48 -2.39 -0.02 2.32 16 4 N -1.11 -23.61 5.15 -172.53 -0.89 -24.50 16 5 S 2.62 48.82 6.08 -56.49 -0.34 48.47 16 6 C -0.65 -3.90 10.04 113.37 1.14 -2.77 16 7 O -1.00 -26.67 18.08 -127.65 -2.31 -28.98 16 8 O -1.00 -26.50 17.39 -127.65 -2.22 -28.72 16 9 C 0.50 16.46 7.18 87.66 0.63 17.09 16 10 O -0.58 -23.75 15.65 -3.04 -0.05 -23.80 16 11 N -0.69 -23.18 3.93 -446.09 -1.75 -24.94 16 12 C 0.20 8.19 2.12 44.24 0.09 8.29 16 13 H 0.06 2.69 7.43 -2.39 -0.02 2.67 16 14 C 0.04 1.82 4.49 29.85 0.13 1.95 16 15 C -0.52 -26.86 8.84 25.60 0.23 -26.63 16 16 H 0.06 2.92 7.74 -2.91 -0.02 2.90 16 17 C 0.01 0.62 5.46 84.65 0.46 1.08 16 18 N -0.93 -52.39 13.29 21.45 0.28 -52.10 16 19 Si 0.96 41.20 29.54 68.60 2.03 43.23 16 20 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C -0.10 -3.76 4.91 -19.87 -0.10 -3.86 16 24 C -0.12 -4.02 9.32 22.27 0.21 -3.81 16 25 C -0.13 -3.53 10.05 22.27 0.22 -3.31 16 26 C -0.13 -3.49 10.05 22.27 0.22 -3.27 16 27 C -0.13 -3.73 10.05 22.27 0.22 -3.51 16 28 C -0.13 -4.85 9.67 22.27 0.22 -4.63 16 29 H 0.11 0.75 5.78 -2.39 -0.01 0.74 16 30 H 0.09 1.36 7.55 -2.39 -0.02 1.34 16 31 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.42 10.00 8.17 -96.75 -0.79 9.21 16 33 H 0.15 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.15 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.16 0.32 6.77 -2.39 -0.02 0.30 16 36 H 0.41 11.89 8.00 -92.71 -0.74 11.15 16 37 H 0.01 0.73 8.14 -2.39 -0.02 0.71 16 38 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 39 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 40 H 0.13 3.77 7.73 -2.91 -0.02 3.75 16 41 H 0.15 3.14 8.06 -2.91 -0.02 3.11 16 42 H 0.15 2.90 8.06 -2.91 -0.02 2.87 16 43 H 0.14 3.35 8.06 -2.91 -0.02 3.33 16 44 H 0.11 4.03 8.04 -2.91 -0.02 4.01 16 Total: -1.00 -81.62 383.08 -1.26 -82.88 By element: Atomic # 1 Polarization: 31.39 SS G_CDS: -0.50 Total: 30.89 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 4.50 Total: -22.42 kcal Atomic # 7 Polarization: -99.19 SS G_CDS: -2.36 Total: -101.54 kcal Atomic # 8 Polarization: -76.92 SS G_CDS: -4.58 Total: -81.50 kcal Atomic # 14 Polarization: 41.20 SS G_CDS: 2.03 Total: 43.23 kcal Atomic # 16 Polarization: 48.82 SS G_CDS: -0.34 Total: 48.47 kcal Total: -81.62 -1.26 -82.88 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153133956.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.226 kcal (2) G-P(sol) polarization free energy of solvation -81.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.255 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds