Wall clock time and date at job start Sat Apr 11 2020 05:58:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47214 * 2 1 4 4 C 1.46502 * 120.00465 * 62.91542 * 3 2 1 5 5 C 1.52996 * 109.46912 * 84.99949 * 4 3 2 6 6 S 1.65607 * 119.99786 * 242.91808 * 3 2 1 7 7 O 1.42100 * 106.40038 * 203.46930 * 6 3 2 8 8 O 1.42102 * 106.40044 * 336.39084 * 6 3 2 9 9 C 1.76202 * 107.21830 * 89.93065 * 6 3 2 10 10 C 1.38080 * 119.95844 * 109.73214 * 9 6 3 11 11 C 1.39001 * 119.91726 * 179.77313 * 10 9 6 12 12 N 1.39537 * 120.08646 * 180.27756 * 11 10 9 13 13 C 1.34771 * 120.00258 * 142.34271 * 12 11 10 14 14 O 1.21744 * 120.00227 * 4.34078 * 13 12 11 15 15 C 1.46167 * 120.00095 * 184.33883 * 13 12 11 16 16 H 1.08004 * 119.99705 * 5.98824 * 15 13 12 17 17 C 1.40120 * 120.00302 * 185.99326 * 15 13 12 18 18 N 1.30636 * 119.99952 * 6.02345 * 17 15 13 19 19 Si 1.86805 * 120.00259 * 186.02430 * 17 15 13 20 20 H 1.48500 * 109.46809 * 94.99050 * 19 17 15 21 21 H 1.48503 * 109.46965 * 214.99325 * 19 17 15 22 22 H 1.48503 * 109.47046 * 334.99063 * 19 17 15 23 23 C 1.39054 * 119.83345 * 0.52012 * 11 10 9 24 24 C 1.38040 * 119.91289 * 359.73305 * 23 11 10 25 25 C 1.38307 * 119.95698 * 290.00560 * 9 6 3 26 26 C 1.50704 * 119.91650 * 359.97438 * 25 9 6 27 27 H 1.09000 * 109.46647 * 51.06751 * 1 2 3 28 28 H 1.09004 * 109.46918 * 171.06102 * 1 2 3 29 29 H 1.09001 * 109.47435 * 291.06655 * 1 2 3 30 30 H 1.09005 * 109.46671 * 119.99300 * 2 1 3 31 31 H 1.08992 * 109.47536 * 239.99485 * 2 1 3 32 32 H 1.09001 * 109.47158 * 205.00237 * 4 3 2 33 33 H 1.09000 * 109.46728 * 325.00340 * 4 3 2 34 34 H 1.09000 * 109.47104 * 60.00622 * 5 4 3 35 35 H 1.09008 * 109.46756 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47444 * 300.00113 * 5 4 3 37 37 H 1.08008 * 120.03956 * 0.02562 * 10 9 6 38 38 H 0.96996 * 119.99316 * 322.33962 * 12 11 10 39 39 H 0.97003 * 120.00562 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.04765 * 179.71102 * 23 11 10 41 41 H 1.08006 * 119.95676 * 179.97438 * 24 23 11 42 42 H 1.08998 * 109.46799 * 94.83450 * 26 25 9 43 43 H 1.09004 * 109.46782 * 214.83394 * 26 25 9 44 44 H 1.08995 * 109.47319 * 334.83594 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7180 2.2645 1.1296 5 6 2.7564 2.0523 2.2330 6 16 2.9100 1.9442 -1.2770 7 8 3.6744 3.0353 -0.7826 8 8 3.4917 0.8038 -1.8938 9 6 1.7778 2.6192 -2.4463 10 6 1.7252 3.9844 -2.6462 11 6 0.8350 4.5156 -3.5723 12 7 0.7829 5.8943 -3.7814 13 6 0.5892 6.3807 -5.0232 14 8 0.3808 5.6190 -5.9497 15 6 0.6292 7.8229 -5.2576 16 1 0.9090 8.4925 -4.4577 17 6 0.3044 8.3368 -6.5201 18 7 -0.1469 7.5412 -7.4528 19 14 0.5168 10.1595 -6.8695 20 1 1.8379 10.3906 -7.5071 21 1 -0.5607 10.6172 -7.7832 22 1 0.4419 10.9197 -5.5960 23 6 -0.0070 3.6701 -4.2863 24 6 0.0478 2.3068 -4.0771 25 6 0.9391 1.7813 -3.1586 26 6 0.9959 0.2923 -2.9333 27 1 -0.3632 0.6458 -0.7994 28 1 -0.3633 -1.0152 -0.1597 29 1 -0.3634 0.3694 0.9590 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.7477 3.3022 0.7973 33 1 0.7250 2.0350 1.5161 34 1 3.7494 2.2818 1.8464 35 1 2.5326 2.7092 3.0736 36 1 2.7267 1.0146 2.5653 37 1 2.3777 4.6384 -2.0867 38 1 0.8861 6.5024 -3.0328 39 1 -0.3721 7.8969 -8.3267 40 1 -0.7032 4.0795 -5.0033 41 1 -0.6061 1.6494 -4.6310 42 1 0.2389 0.0062 -2.2031 43 1 0.8070 -0.2249 -3.8741 44 1 1.9826 0.0186 -2.5599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153475320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:59 Heat of formation + Delta-G solvation = -78.788078 kcal Electronic energy + Delta-G solvation = -28282.882506 eV Core-core repulsion = 24327.590422 eV Total energy + Delta-G solvation = -3955.292084 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.49026 -37.75390 -37.33886 -37.11616 -35.81368 -33.97052 -32.62025 -32.23777 -30.87141 -30.78566 -29.16283 -27.06804 -25.39538 -24.13631 -23.07784 -22.02497 -21.59831 -20.29866 -18.71367 -18.01975 -17.62428 -17.17910 -16.49574 -15.67555 -15.45310 -15.25150 -14.97691 -14.73237 -14.48959 -14.13403 -13.98817 -13.80035 -13.52556 -13.31999 -13.13607 -12.96162 -12.63034 -12.43652 -12.25540 -12.09447 -12.02160 -11.88234 -11.86863 -11.63927 -11.48332 -11.39117 -11.29067 -11.19131 -11.09916 -10.77099 -10.71131 -10.38567 -10.32241 -9.36341 -9.31310 -8.98111 -8.85810 -7.84953 -7.27044 -6.44061 -4.88425 0.41476 1.24576 1.71430 2.91478 3.03699 3.11424 3.14600 3.70254 3.89386 3.97624 4.28807 4.40232 4.49430 4.54441 4.84702 4.90957 5.03693 5.07989 5.08860 5.14947 5.18893 5.30816 5.40865 5.46828 5.54486 5.59623 5.65829 5.67881 5.70881 5.86111 5.94688 5.96141 6.01322 6.07626 6.16624 6.20474 6.40675 6.46421 6.78358 6.87466 7.12663 7.23378 7.62700 7.92952 8.08380 8.78676 9.11754 10.29101 10.48393 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.002982 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.795349 B = 9386.671845 C =10012.784079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.105 3.895 3 N -0.996 5.996 4 C 0.120 3.880 5 C -0.173 4.173 6 S 2.694 3.306 7 O -0.958 6.958 8 O -0.959 6.959 9 C -0.658 4.658 10 C -0.075 4.075 11 C 0.167 3.833 12 N -0.702 5.702 13 C 0.545 3.455 14 O -0.564 6.564 15 C -0.538 4.538 16 H 0.074 0.926 17 C 0.087 3.913 18 N -0.760 5.760 19 Si 0.914 3.086 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.263 1.263 23 C -0.065 4.065 24 C -0.125 4.125 25 C -0.023 4.023 26 C -0.185 4.185 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.074 0.926 31 H 0.099 0.901 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.057 0.943 37 H 0.137 0.863 38 H 0.395 0.605 39 H 0.273 0.727 40 H 0.147 0.853 41 H 0.125 0.875 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -13.165 17.062 21.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.020 4.020 3 N -0.834 5.834 4 C -0.006 4.006 5 C -0.232 4.232 6 S 2.788 3.212 7 O -0.949 6.949 8 O -0.949 6.949 9 C -0.748 4.748 10 C -0.098 4.098 11 C 0.068 3.932 12 N -0.346 5.346 13 C 0.352 3.648 14 O -0.447 6.447 15 C -0.574 4.574 16 H 0.092 0.908 17 C -0.134 4.134 18 N -0.388 5.388 19 Si 0.738 3.262 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.187 1.187 23 C -0.086 4.086 24 C -0.145 4.145 25 C -0.026 4.026 26 C -0.241 4.241 27 H 0.090 0.910 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.117 0.883 32 H 0.102 0.898 33 H 0.098 0.902 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.076 0.924 37 H 0.155 0.845 38 H 0.229 0.771 39 H 0.084 0.916 40 H 0.165 0.835 41 H 0.143 0.857 42 H 0.103 0.897 43 H 0.095 0.905 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.469 -13.671 16.083 21.114 hybrid contribution -0.624 1.520 -0.270 1.665 sum -0.155 -12.151 15.814 19.944 Atomic orbital electron populations 1.22357 0.95801 1.02676 1.02936 1.21552 0.94813 0.81521 1.04144 1.57599 1.72731 1.19725 1.33318 1.21228 0.99330 0.93555 0.86438 1.22207 1.00271 1.02046 0.98655 1.01860 0.73562 0.73197 0.72606 1.93542 1.67166 1.54567 1.79604 1.93460 1.74823 1.50493 1.76111 1.30157 1.20713 1.02697 1.21187 1.20653 0.96403 0.92863 0.99887 1.17974 0.93460 0.86209 0.95546 1.44142 1.76041 1.02403 1.12008 1.18417 0.77056 0.90021 0.79332 1.90620 1.53048 1.59418 1.41567 1.20847 1.48921 0.89894 0.97771 0.90798 1.25743 0.92482 0.99730 0.95435 1.69950 1.29382 1.36140 1.03341 0.86241 0.78660 0.82155 0.79096 1.19553 1.20272 1.18689 1.21781 0.96556 0.92769 0.97480 1.21022 0.99570 0.95157 0.98705 1.19245 0.94069 0.94485 0.94789 1.22081 1.05776 0.91832 1.04415 0.91042 0.91317 0.92132 0.90811 0.88299 0.89841 0.90179 0.91793 0.91420 0.92377 0.84529 0.77079 0.91624 0.83525 0.85714 0.89677 0.90452 0.87641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 8.42 37.16 0.31 -0.90 16 2 C 0.10 0.84 5.69 -4.04 -0.02 0.82 16 3 N -1.00 -10.22 2.91 -114.38 -0.33 -10.55 16 4 C 0.12 1.04 5.95 -4.04 -0.02 1.02 16 5 C -0.17 -1.38 10.24 37.16 0.38 -1.00 16 6 S 2.69 38.48 5.16 -107.50 -0.55 37.92 16 7 O -0.96 -15.73 15.94 -57.17 -0.91 -16.65 16 8 O -0.96 -15.13 14.01 -57.17 -0.80 -15.93 16 9 C -0.66 -10.65 5.92 -39.61 -0.23 -10.89 16 10 C -0.08 -1.35 9.47 -39.36 -0.37 -1.72 16 11 C 0.17 3.46 6.24 -83.77 -0.52 2.94 16 12 N -0.70 -15.52 5.31 -11.20 -0.06 -15.58 16 13 C 0.54 14.85 7.54 -13.08 -0.10 14.75 16 14 O -0.56 -17.22 12.71 5.15 0.07 -17.16 16 15 C -0.54 -14.50 9.53 -35.70 -0.34 -14.84 16 16 H 0.07 1.81 7.86 -52.48 -0.41 1.39 16 17 C 0.09 2.33 5.49 -17.35 -0.10 2.23 16 18 N -0.76 -21.72 11.89 55.55 0.66 -21.06 16 19 Si 0.91 19.32 29.56 -169.99 -5.03 14.29 16 20 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 21 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.94 16 23 C -0.06 -1.32 8.67 -39.35 -0.34 -1.67 16 24 C -0.13 -2.11 9.71 -39.61 -0.38 -2.49 16 25 C -0.02 -0.36 5.88 -104.55 -0.61 -0.97 16 26 C -0.19 -2.20 7.99 36.01 0.29 -1.91 16 27 H 0.07 0.58 6.32 -51.93 -0.33 0.25 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.06 0.36 7.18 -51.93 -0.37 -0.01 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.10 0.84 4.72 -51.93 -0.24 0.60 16 32 H 0.08 0.77 7.61 -51.93 -0.40 0.38 16 33 H 0.08 0.53 6.80 -51.93 -0.35 0.18 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.44 8.14 -51.92 -0.42 0.01 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.14 2.28 7.34 -52.48 -0.39 1.89 16 38 H 0.40 7.45 8.80 -40.82 -0.36 7.09 16 39 H 0.27 7.06 8.29 -40.82 -0.34 6.72 16 40 H 0.15 3.37 6.45 -52.49 -0.34 3.03 16 41 H 0.12 1.77 8.06 -52.48 -0.42 1.35 16 42 H 0.09 0.78 4.26 -51.93 -0.22 0.56 16 43 H 0.08 0.85 8.12 -51.93 -0.42 0.42 16 44 H 0.11 1.32 3.07 -51.93 -0.16 1.16 16 LS Contribution 361.13 15.07 5.44 5.44 Total: -1.00 -35.01 361.13 -9.25 -44.26 By element: Atomic # 1 Polarization: 15.30 SS G_CDS: -5.66 Total: 9.63 kcal Atomic # 6 Polarization: -12.56 SS G_CDS: -2.07 Total: -14.63 kcal Atomic # 7 Polarization: -47.46 SS G_CDS: 0.27 Total: -47.19 kcal Atomic # 8 Polarization: -48.09 SS G_CDS: -1.65 Total: -49.74 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -5.03 Total: 14.29 kcal Atomic # 16 Polarization: 38.48 SS G_CDS: -0.55 Total: 37.92 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.01 -9.25 -44.26 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153475320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.528 kcal (2) G-P(sol) polarization free energy of solvation -35.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.260 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds