Wall clock time and date at job start Sat Apr 11 2020 05:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46498 * 109.47214 * 2 1 4 4 C 1.46502 * 120.00465 * 62.91542 * 3 2 1 5 5 C 1.52996 * 109.46912 * 84.99949 * 4 3 2 6 6 S 1.65607 * 119.99786 * 242.91808 * 3 2 1 7 7 O 1.42100 * 106.40038 * 203.46930 * 6 3 2 8 8 O 1.42102 * 106.40044 * 336.39084 * 6 3 2 9 9 C 1.76202 * 107.21830 * 89.93065 * 6 3 2 10 10 C 1.38080 * 119.95844 * 109.73214 * 9 6 3 11 11 C 1.39001 * 119.91726 * 179.77313 * 10 9 6 12 12 N 1.39537 * 120.08646 * 180.27756 * 11 10 9 13 13 C 1.34771 * 120.00258 * 142.34271 * 12 11 10 14 14 O 1.21744 * 120.00227 * 4.34078 * 13 12 11 15 15 C 1.46167 * 120.00095 * 184.33883 * 13 12 11 16 16 H 1.08004 * 119.99705 * 5.98824 * 15 13 12 17 17 C 1.40120 * 120.00302 * 185.99326 * 15 13 12 18 18 N 1.30636 * 119.99952 * 6.02345 * 17 15 13 19 19 Si 1.86805 * 120.00259 * 186.02430 * 17 15 13 20 20 H 1.48500 * 109.46809 * 94.99050 * 19 17 15 21 21 H 1.48503 * 109.46965 * 214.99325 * 19 17 15 22 22 H 1.48503 * 109.47046 * 334.99063 * 19 17 15 23 23 C 1.39054 * 119.83345 * 0.52012 * 11 10 9 24 24 C 1.38040 * 119.91289 * 359.73305 * 23 11 10 25 25 C 1.38307 * 119.95698 * 290.00560 * 9 6 3 26 26 C 1.50704 * 119.91650 * 359.97438 * 25 9 6 27 27 H 1.09000 * 109.46647 * 51.06751 * 1 2 3 28 28 H 1.09004 * 109.46918 * 171.06102 * 1 2 3 29 29 H 1.09001 * 109.47435 * 291.06655 * 1 2 3 30 30 H 1.09005 * 109.46671 * 119.99300 * 2 1 3 31 31 H 1.08992 * 109.47536 * 239.99485 * 2 1 3 32 32 H 1.09001 * 109.47158 * 205.00237 * 4 3 2 33 33 H 1.09000 * 109.46728 * 325.00340 * 4 3 2 34 34 H 1.09000 * 109.47104 * 60.00622 * 5 4 3 35 35 H 1.09008 * 109.46756 * 180.02562 * 5 4 3 36 36 H 1.09001 * 109.47444 * 300.00113 * 5 4 3 37 37 H 1.08008 * 120.03956 * 0.02562 * 10 9 6 38 38 H 0.96996 * 119.99316 * 322.33962 * 12 11 10 39 39 H 0.97003 * 120.00562 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.04765 * 179.71102 * 23 11 10 41 41 H 1.08006 * 119.95676 * 179.97438 * 24 23 11 42 42 H 1.08998 * 109.46799 * 94.83450 * 26 25 9 43 43 H 1.09004 * 109.46782 * 214.83394 * 26 25 9 44 44 H 1.08995 * 109.47319 * 334.83594 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 1.7180 2.2645 1.1296 5 6 2.7564 2.0523 2.2330 6 16 2.9100 1.9442 -1.2770 7 8 3.6744 3.0353 -0.7826 8 8 3.4917 0.8038 -1.8938 9 6 1.7778 2.6192 -2.4463 10 6 1.7252 3.9844 -2.6462 11 6 0.8350 4.5156 -3.5723 12 7 0.7829 5.8943 -3.7814 13 6 0.5892 6.3807 -5.0232 14 8 0.3808 5.6190 -5.9497 15 6 0.6292 7.8229 -5.2576 16 1 0.9090 8.4925 -4.4577 17 6 0.3044 8.3368 -6.5201 18 7 -0.1469 7.5412 -7.4528 19 14 0.5168 10.1595 -6.8695 20 1 1.8379 10.3906 -7.5071 21 1 -0.5607 10.6172 -7.7832 22 1 0.4419 10.9197 -5.5960 23 6 -0.0070 3.6701 -4.2863 24 6 0.0478 2.3068 -4.0771 25 6 0.9391 1.7813 -3.1586 26 6 0.9959 0.2923 -2.9333 27 1 -0.3632 0.6458 -0.7994 28 1 -0.3633 -1.0152 -0.1597 29 1 -0.3634 0.3694 0.9590 30 1 1.8933 -0.5138 0.8901 31 1 1.8934 -0.5139 -0.8898 32 1 1.7477 3.3022 0.7973 33 1 0.7250 2.0350 1.5161 34 1 3.7494 2.2818 1.8464 35 1 2.5326 2.7092 3.0736 36 1 2.7267 1.0146 2.5653 37 1 2.3777 4.6384 -2.0867 38 1 0.8861 6.5024 -3.0328 39 1 -0.3721 7.8969 -8.3267 40 1 -0.7032 4.0795 -5.0033 41 1 -0.6061 1.6494 -4.6310 42 1 0.2389 0.0062 -2.2031 43 1 0.8070 -0.2249 -3.8741 44 1 1.9826 0.0186 -2.5599 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153475320.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:58 Heat of formation + Delta-G solvation = -104.194261 kcal Electronic energy + Delta-G solvation = -28283.984201 eV Core-core repulsion = 24327.590422 eV Total energy + Delta-G solvation = -3956.393779 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.05295 -39.19836 -38.57682 -38.18295 -37.03012 -35.70391 -34.64026 -33.08283 -32.26732 -32.10421 -29.87429 -28.87986 -26.90281 -24.76289 -24.48715 -23.15610 -22.78241 -21.97650 -19.82348 -19.60913 -18.96853 -18.52689 -17.71170 -17.40238 -16.80822 -16.56270 -16.35142 -15.99304 -15.72165 -15.42989 -14.96603 -14.89896 -14.72071 -14.58224 -14.46806 -14.23239 -13.89486 -13.67416 -13.39123 -13.29720 -13.24933 -13.04096 -12.91515 -12.84186 -12.71919 -12.69588 -12.59070 -12.53438 -12.34574 -12.04616 -11.97202 -11.62916 -11.38778 -11.08466 -10.85480 -10.36565 -10.09732 -9.89298 -8.91305 -8.43815 -6.99187 -0.71557 -0.15904 0.27405 1.37240 1.38463 1.54897 1.89110 2.17486 2.26096 2.52067 2.63346 2.84588 3.26459 3.48894 3.74222 3.78674 3.84251 4.12074 4.24169 4.29237 4.32864 4.45335 4.49753 4.52126 4.60823 4.63759 4.68775 4.76318 4.81617 4.89739 4.96707 5.08026 5.13381 5.20786 5.22875 5.32245 5.34082 5.40316 5.40724 5.54522 5.66433 5.71380 5.76432 6.08675 6.25012 6.73336 7.24501 8.27009 8.50884 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020229 B = 0.002982 C = 0.002796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1383.795349 B = 9386.671845 C =10012.784079 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.094 3.906 3 N -0.984 5.984 4 C 0.110 3.890 5 C -0.173 4.173 6 S 2.710 3.290 7 O -0.982 6.982 8 O -0.972 6.972 9 C -0.666 4.666 10 C -0.073 4.073 11 C 0.132 3.868 12 N -0.695 5.695 13 C 0.531 3.469 14 O -0.609 6.609 15 C -0.566 4.566 16 H 0.093 0.907 17 C 0.031 3.969 18 N -0.813 5.813 19 Si 1.002 2.998 20 H -0.266 1.266 21 H -0.269 1.269 22 H -0.246 1.246 23 C -0.089 4.089 24 C -0.125 4.125 25 C -0.010 4.010 26 C -0.187 4.187 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.071 0.929 30 H 0.099 0.901 31 H 0.096 0.904 32 H 0.073 0.927 33 H 0.108 0.892 34 H 0.041 0.959 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.145 0.855 38 H 0.408 0.592 39 H 0.279 0.721 40 H 0.111 0.889 41 H 0.152 0.848 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.226 -14.321 19.466 24.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.030 4.030 3 N -0.825 5.825 4 C -0.014 4.014 5 C -0.231 4.231 6 S 2.801 3.199 7 O -0.972 6.972 8 O -0.962 6.962 9 C -0.752 4.752 10 C -0.095 4.095 11 C 0.035 3.965 12 N -0.341 5.341 13 C 0.338 3.662 14 O -0.495 6.495 15 C -0.602 4.602 16 H 0.111 0.889 17 C -0.185 4.185 18 N -0.441 5.441 19 Si 0.821 3.179 20 H -0.191 1.191 21 H -0.194 1.194 22 H -0.169 1.169 23 C -0.110 4.110 24 C -0.144 4.144 25 C -0.013 4.013 26 C -0.242 4.242 27 H 0.076 0.924 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.091 0.909 33 H 0.126 0.874 34 H 0.060 0.940 35 H 0.102 0.898 36 H 0.092 0.908 37 H 0.163 0.837 38 H 0.244 0.756 39 H 0.089 0.911 40 H 0.129 0.871 41 H 0.169 0.831 42 H 0.137 0.863 43 H 0.111 0.889 44 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.452 -14.842 18.525 23.742 hybrid contribution -0.620 1.652 -0.847 1.958 sum -0.167 -13.190 17.678 22.057 Atomic orbital electron populations 1.22367 0.94533 1.03732 1.03116 1.21880 0.95880 0.79956 1.05260 1.57387 1.72444 1.20807 1.31829 1.21493 1.01109 0.92880 0.85919 1.22219 0.98715 1.03460 0.98756 1.01383 0.73386 0.72460 0.72655 1.93508 1.68094 1.55788 1.79852 1.93443 1.75306 1.50514 1.76969 1.30692 1.20761 1.02014 1.21770 1.20726 0.95753 0.94059 0.98972 1.18174 0.95376 0.85428 0.97547 1.43680 1.75792 1.03641 1.10969 1.18756 0.76707 0.90444 0.80270 1.90575 1.55006 1.60473 1.43472 1.21392 1.49409 0.90306 0.99095 0.88855 1.26995 0.91228 1.05558 0.94734 1.70101 1.30709 1.39149 1.04167 0.84940 0.78705 0.74739 0.79549 1.19070 1.19385 1.16881 1.21621 0.96983 0.94641 0.97784 1.21288 1.00211 0.93829 0.99034 1.19717 0.92160 0.96603 0.92809 1.22243 1.06888 0.88790 1.06296 0.92430 0.89267 0.90972 0.88307 0.88627 0.90851 0.87358 0.93979 0.89801 0.90838 0.83698 0.75594 0.91089 0.87135 0.83051 0.86316 0.88938 0.87727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.67 8.42 71.98 0.61 -1.07 16 2 C 0.09 1.16 5.69 86.38 0.49 1.65 16 3 N -0.98 -17.66 2.91 -515.79 -1.50 -19.16 16 4 C 0.11 1.64 5.95 86.38 0.51 2.15 16 5 C -0.17 -2.32 10.24 71.98 0.74 -1.58 16 6 S 2.71 74.00 5.16 -56.49 -0.29 73.71 16 7 O -0.98 -31.80 15.94 -128.00 -2.04 -33.84 16 8 O -0.97 -29.12 14.01 -128.00 -1.79 -30.92 16 9 C -0.67 -21.20 5.92 22.25 0.13 -21.07 16 10 C -0.07 -2.68 9.47 22.42 0.21 -2.46 16 11 C 0.13 5.75 6.24 38.29 0.24 5.98 16 12 N -0.70 -32.48 5.31 -307.54 -1.63 -34.11 16 13 C 0.53 30.58 7.54 86.30 0.65 31.23 16 14 O -0.61 -39.70 12.71 -4.49 -0.06 -39.76 16 15 C -0.57 -31.44 9.53 24.79 0.24 -31.21 16 16 H 0.09 4.61 7.86 -2.91 -0.02 4.59 16 17 C 0.03 1.71 5.49 85.33 0.47 2.18 16 18 N -0.81 -48.34 11.89 21.85 0.26 -48.08 16 19 Si 1.00 39.92 29.56 68.60 2.03 41.95 16 20 H -0.27 -10.33 7.11 99.48 0.71 -9.62 16 21 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 22 H -0.25 -9.02 7.11 99.48 0.71 -8.31 16 23 C -0.09 -3.86 8.67 22.42 0.19 -3.67 16 24 C -0.12 -4.21 9.71 22.25 0.22 -4.00 16 25 C -0.01 -0.31 5.88 -19.82 -0.12 -0.42 16 26 C -0.19 -3.90 7.99 71.24 0.57 -3.33 16 27 H 0.06 0.72 6.32 -2.39 -0.02 0.70 16 28 H 0.09 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.07 0.54 7.18 -2.39 -0.02 0.52 16 30 H 0.10 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.10 1.29 4.72 -2.39 -0.01 1.27 16 32 H 0.07 1.25 7.61 -2.39 -0.02 1.24 16 33 H 0.11 1.02 6.80 -2.39 -0.02 1.01 16 34 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 35 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.15 4.95 7.34 -2.91 -0.02 4.93 16 38 H 0.41 16.12 8.80 -92.71 -0.82 15.31 16 39 H 0.28 14.98 8.29 -92.71 -0.77 14.21 16 40 H 0.11 5.57 6.45 -2.91 -0.02 5.55 16 41 H 0.15 4.17 8.06 -2.91 -0.02 4.15 16 42 H 0.12 1.72 4.26 -2.39 -0.01 1.71 16 43 H 0.09 1.72 8.12 -2.39 -0.02 1.70 16 44 H 0.10 2.32 3.07 -2.39 -0.01 2.31 16 Total: -1.00 -80.89 361.13 0.36 -80.53 By element: Atomic # 1 Polarization: 35.06 SS G_CDS: 0.24 Total: 35.30 kcal Atomic # 6 Polarization: -30.77 SS G_CDS: 5.15 Total: -25.62 kcal Atomic # 7 Polarization: -98.49 SS G_CDS: -2.87 Total: -101.36 kcal Atomic # 8 Polarization: -100.62 SS G_CDS: -3.89 Total: -104.51 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Atomic # 16 Polarization: 74.00 SS G_CDS: -0.29 Total: 73.71 kcal Total: -80.89 0.36 -80.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153475320.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.666 kcal (2) G-P(sol) polarization free energy of solvation -80.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds