Wall clock time and date at job start Sat Apr 11 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46994 * 2 1 4 4 C 1.50696 * 109.47414 * 120.00416 * 2 1 3 5 5 H 1.07996 * 120.00252 * 120.00109 * 4 2 1 6 6 C 1.37875 * 119.99791 * 300.00154 * 4 2 1 7 7 N 1.31519 * 120.00205 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00109 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47117 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47111 * 120.00094 * 8 6 4 11 11 H 1.48505 * 109.47106 * 239.99949 * 8 6 4 12 12 N 1.46908 * 109.47211 * 240.00436 * 2 1 3 13 13 C 1.46894 * 110.99824 * 306.04734 * 12 2 1 14 14 C 1.46900 * 110.99966 * 69.99799 * 12 2 1 15 15 C 1.50697 * 109.47042 * 169.99981 * 14 12 2 16 16 O 1.21289 * 120.00185 * 359.97438 * 15 14 12 17 17 N 1.34781 * 119.99961 * 179.97438 * 15 14 12 18 18 C 1.39925 * 119.99818 * 174.72928 * 17 15 14 19 19 C 1.38899 * 120.06867 * 326.55916 * 18 17 15 20 20 C 1.38092 * 119.92509 * 179.72443 * 19 18 17 21 21 C 1.38305 * 120.07077 * 0.56851 * 20 19 18 22 22 C 1.38265 * 120.14232 * 359.68268 * 21 20 19 23 23 S 1.76195 * 119.96516 * 180.02562 * 22 21 20 24 24 C 1.81405 * 104.44806 * 270.02053 * 23 22 21 25 25 O 1.42098 * 104.28081 * 26.09208 * 23 22 21 26 26 O 1.42103 * 104.27548 * 153.95329 * 23 22 21 27 27 C 1.38136 * 120.06656 * 0.04202 * 22 21 20 28 28 H 1.09007 * 109.47434 * 59.99823 * 1 2 3 29 29 H 1.09003 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47748 * 299.99711 * 1 2 3 31 31 H 0.97001 * 120.00213 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47046 * 183.95947 * 13 12 2 33 33 H 1.09005 * 109.47260 * 303.94959 * 13 12 2 34 34 H 1.08995 * 109.47728 * 63.95097 * 13 12 2 35 35 H 1.09002 * 109.47176 * 50.00360 * 14 12 2 36 36 H 1.09004 * 109.47343 * 290.00209 * 14 12 2 37 37 H 0.96998 * 119.99877 * 354.73142 * 17 15 14 38 38 H 1.07992 * 120.03959 * 359.97245 * 19 18 17 39 39 H 1.07995 * 119.96713 * 180.25131 * 20 19 18 40 40 H 1.08001 * 119.92895 * 179.70106 * 21 20 19 41 41 H 1.09002 * 109.47267 * 60.00531 * 24 23 22 42 42 H 1.09004 * 109.46681 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47335 * 300.00053 * 24 23 22 44 44 H 1.08000 * 120.02998 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4826 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1465 -2.2871 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1660 -1.5869 4.8159 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0353 -1.3080 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5160 -3.5795 16 8 3.1502 -1.5128 -3.4215 17 7 2.3777 0.0430 -4.8018 18 6 3.1362 -0.4596 -5.8649 19 6 4.4032 -0.9788 -5.6314 20 6 5.1469 -1.4792 -6.6819 21 6 4.6363 -1.4529 -7.9670 22 6 3.3775 -0.9319 -8.2034 23 16 2.7313 -0.9014 -9.8423 24 6 3.2705 0.6960 -10.5117 25 8 3.3979 -1.9690 -10.5018 26 8 1.3217 -0.9169 -9.6634 27 6 2.6263 -0.4351 -7.1561 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.7088 1.1612 3.4844 32 1 1.8665 -2.5519 -2.1650 33 1 1.6466 -2.5988 -0.3993 34 1 0.3556 -1.9520 -1.4400 35 1 2.1025 1.1190 -2.2604 36 1 0.6813 0.1054 -2.6088 37 1 1.7802 0.7936 -4.9446 38 1 4.8046 -0.9949 -4.6290 39 1 6.1304 -1.8868 -6.5006 40 1 5.2219 -1.8405 -8.7875 41 1 4.3594 0.7449 -10.5028 42 1 2.9101 0.8013 -11.5351 43 1 2.8656 1.5019 -9.8996 44 1 1.6433 -0.0279 -7.3415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000161915373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:16 Heat of formation + Delta-G solvation = -52.870363 kcal Electronic energy + Delta-G solvation = -26949.280748 eV Core-core repulsion = 22995.112540 eV Total energy + Delta-G solvation = -3954.168208 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -40.65369 -38.81052 -37.44654 -36.78703 -36.27545 -34.83477 -32.76345 -31.58333 -30.45893 -29.93102 -28.96027 -27.34298 -25.26942 -24.35168 -23.73380 -22.65142 -20.83095 -19.35143 -19.23392 -18.34691 -17.30106 -16.62658 -16.52733 -16.27363 -16.02575 -15.98999 -15.47649 -15.04232 -14.58726 -14.30360 -14.17752 -13.91129 -13.80974 -13.66103 -13.41043 -13.14245 -12.78309 -12.55403 -12.46757 -12.41581 -12.36130 -11.97184 -11.67620 -11.53771 -11.19803 -11.10758 -10.97264 -10.85747 -10.75305 -10.62557 -10.46513 -10.13706 -10.04432 -9.63485 -9.39448 -8.93089 -8.43036 -8.41268 -7.25024 -6.05336 -4.08181 -0.32856 0.58198 0.95497 2.48069 2.63985 2.90266 3.25242 3.28884 3.36910 3.42867 3.61635 3.75300 4.31240 4.39157 4.41091 4.54348 4.73182 4.80028 4.93095 5.00939 5.14372 5.16301 5.27332 5.30061 5.41344 5.63250 5.68330 5.71012 5.94480 6.07952 6.17127 6.28429 6.36137 6.61089 6.69867 6.75086 6.92668 7.01510 7.21421 7.38052 7.63863 7.79567 8.01746 8.20733 8.30156 8.50619 8.98424 9.56970 11.02064 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030710 B = 0.002059 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.528084 B =13597.458007 C =14009.055623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.496 4.496 5 H 0.065 0.935 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 N -0.517 5.517 13 C 0.029 3.971 14 C 0.038 3.962 15 C 0.514 3.486 16 O -0.496 6.496 17 N -0.685 5.685 18 C 0.142 3.858 19 C -0.068 4.068 20 C -0.118 4.118 21 C -0.047 4.047 22 C -0.641 4.641 23 S 2.502 3.498 24 C -0.650 4.650 25 O -0.938 6.938 26 O -0.937 6.937 27 C -0.060 4.060 28 H 0.005 0.995 29 H 0.033 0.967 30 H 0.090 0.910 31 H 0.260 0.740 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.012 0.988 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.412 0.588 38 H 0.146 0.854 39 H 0.136 0.864 40 H 0.141 0.859 41 H 0.132 0.868 42 H 0.131 0.869 43 H 0.132 0.868 44 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.573 3.381 -25.713 26.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.105 3.895 3 H 0.057 0.943 4 C -0.534 4.534 5 H 0.083 0.917 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.197 1.197 10 H -0.211 1.211 11 H -0.212 1.212 12 N -0.241 5.241 13 C -0.119 4.119 14 C -0.094 4.094 15 C 0.303 3.697 16 O -0.368 6.368 17 N -0.332 5.332 18 C 0.046 3.954 19 C -0.088 4.088 20 C -0.137 4.137 21 C -0.067 4.067 22 C -0.729 4.729 23 S 2.682 3.318 24 C -0.800 4.800 25 O -0.935 6.935 26 O -0.935 6.935 27 C -0.081 4.081 28 H 0.024 0.976 29 H 0.052 0.948 30 H 0.109 0.891 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.093 0.907 34 H 0.031 0.969 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.248 0.752 38 H 0.164 0.836 39 H 0.154 0.846 40 H 0.159 0.841 41 H 0.151 0.849 42 H 0.149 0.851 43 H 0.151 0.849 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.997 2.086 -25.669 26.234 hybrid contribution -0.510 0.721 1.315 1.584 sum 4.487 2.807 -24.355 24.923 Atomic orbital electron populations 1.22436 1.00664 0.99667 1.00527 1.19392 0.89847 0.94472 0.85783 0.94261 1.21117 1.30418 1.12529 0.89374 0.91726 1.24925 0.95239 0.95166 0.99052 1.69885 1.37198 1.23119 1.23368 0.86436 0.78536 0.79705 0.82724 1.19681 1.21067 1.21166 1.62140 1.59131 1.02379 1.00434 1.22385 0.95488 0.91410 1.02649 1.21947 0.97887 0.99167 0.90406 1.21400 0.81461 0.83775 0.83092 1.90671 1.38940 1.23695 1.83481 1.43798 1.44902 1.36072 1.08400 1.17822 0.91216 0.98832 0.87491 1.21629 0.91633 0.94642 1.00890 1.21217 1.00586 0.99849 0.92092 1.20888 0.93036 0.94538 0.98210 1.30273 1.06037 1.14793 1.21778 1.05102 0.74910 0.77155 0.74659 1.30228 1.13491 1.22962 1.13301 1.93587 1.76221 1.49806 1.73893 1.93595 1.27955 1.86678 1.85245 1.20606 0.98653 0.97859 0.91029 0.97572 0.94768 0.89127 0.93041 0.92112 0.90697 0.96914 0.88065 0.92360 0.75222 0.83601 0.84635 0.84146 0.84908 0.85053 0.84917 0.83888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.00 8.22 37.15 0.31 -3.70 16 2 C 0.21 5.10 2.31 -68.87 -0.16 4.95 16 3 H 0.04 1.02 7.93 -51.93 -0.41 0.61 16 4 C -0.50 -13.40 7.91 -34.44 -0.27 -13.67 16 5 H 0.06 1.79 7.12 -52.49 -0.37 1.42 16 6 C 0.06 1.55 5.30 -17.82 -0.09 1.45 16 7 N -0.90 -24.91 11.32 55.43 0.63 -24.28 16 8 Si 0.90 21.25 29.54 -169.99 -5.02 16.23 16 9 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 N -0.52 -10.96 4.44 -237.73 -1.06 -12.02 16 13 C 0.03 0.59 8.34 60.06 0.50 1.10 16 14 C 0.04 0.62 5.02 -4.98 -0.02 0.59 16 15 C 0.51 7.90 7.29 -10.98 -0.08 7.82 16 16 O -0.50 -9.30 12.01 5.55 0.07 -9.23 16 17 N -0.68 -7.80 5.34 -9.86 -0.05 -7.85 16 18 C 0.14 1.66 6.28 -83.69 -0.53 1.14 16 19 C -0.07 -0.82 8.66 -39.39 -0.34 -1.16 16 20 C -0.12 -1.17 10.04 -39.61 -0.40 -1.56 16 21 C -0.05 -0.42 9.47 -39.55 -0.37 -0.79 16 22 C -0.64 -5.73 5.65 -39.61 -0.22 -5.95 16 23 S 2.50 18.28 5.80 -107.50 -0.62 17.65 16 24 C -0.65 -1.82 10.80 101.05 1.09 -0.73 16 25 O -0.94 -9.77 17.12 -57.54 -0.99 -10.76 16 26 O -0.94 -10.07 17.12 -57.54 -0.99 -11.05 16 27 C -0.06 -0.59 9.39 -39.39 -0.37 -0.96 16 28 H 0.01 0.11 6.91 -51.93 -0.36 -0.25 16 29 H 0.03 0.78 6.41 -51.93 -0.33 0.44 16 30 H 0.09 2.33 6.07 -51.93 -0.32 2.01 16 31 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 32 H 0.06 1.22 5.88 -51.93 -0.31 0.91 16 33 H 0.07 1.65 6.76 -51.93 -0.35 1.30 16 34 H 0.01 0.25 6.46 -51.93 -0.34 -0.09 16 35 H 0.10 1.51 7.93 -51.93 -0.41 1.10 16 36 H 0.06 0.88 7.06 -51.93 -0.37 0.52 16 37 H 0.41 3.21 8.82 -40.82 -0.36 2.85 16 38 H 0.15 2.01 6.43 -52.49 -0.34 1.67 16 39 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 40 H 0.14 0.95 7.57 -52.49 -0.40 0.55 16 41 H 0.13 0.18 8.14 -51.92 -0.42 -0.24 16 42 H 0.13 0.19 8.14 -51.92 -0.42 -0.24 16 43 H 0.13 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.14 1.12 7.57 -52.49 -0.40 0.73 16 LS Contribution 368.39 15.07 5.55 5.55 Total: -1.00 -36.32 368.39 -9.32 -45.65 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: -5.88 Total: 1.61 kcal Atomic # 6 Polarization: -10.53 SS G_CDS: -0.97 Total: -11.50 kcal Atomic # 7 Polarization: -43.67 SS G_CDS: -0.48 Total: -44.15 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: -1.90 Total: -31.04 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 16 Polarization: 18.28 SS G_CDS: -0.62 Total: 17.65 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -36.32 -9.32 -45.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161915373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.225 kcal (2) G-P(sol) polarization free energy of solvation -36.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.870 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds