Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09004 * 109.46994 * 2 1 4 4 C 1.50696 * 109.47414 * 120.00416 * 2 1 3 5 5 H 1.07996 * 120.00252 * 120.00109 * 4 2 1 6 6 C 1.37875 * 119.99791 * 300.00154 * 4 2 1 7 7 N 1.31519 * 120.00205 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 120.00109 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.47117 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47111 * 120.00094 * 8 6 4 11 11 H 1.48505 * 109.47106 * 239.99949 * 8 6 4 12 12 N 1.46908 * 109.47211 * 240.00436 * 2 1 3 13 13 C 1.46894 * 110.99824 * 306.04734 * 12 2 1 14 14 C 1.46900 * 110.99966 * 69.99799 * 12 2 1 15 15 C 1.50697 * 109.47042 * 169.99981 * 14 12 2 16 16 O 1.21289 * 120.00185 * 359.97438 * 15 14 12 17 17 N 1.34781 * 119.99961 * 179.97438 * 15 14 12 18 18 C 1.39925 * 119.99818 * 174.72928 * 17 15 14 19 19 C 1.38899 * 120.06867 * 326.55916 * 18 17 15 20 20 C 1.38092 * 119.92509 * 179.72443 * 19 18 17 21 21 C 1.38305 * 120.07077 * 0.56851 * 20 19 18 22 22 C 1.38265 * 120.14232 * 359.68268 * 21 20 19 23 23 S 1.76195 * 119.96516 * 180.02562 * 22 21 20 24 24 C 1.81405 * 104.44806 * 270.02053 * 23 22 21 25 25 O 1.42098 * 104.28081 * 26.09208 * 23 22 21 26 26 O 1.42103 * 104.27548 * 153.95329 * 23 22 21 27 27 C 1.38136 * 120.06656 * 0.04202 * 22 21 20 28 28 H 1.09007 * 109.47434 * 59.99823 * 1 2 3 29 29 H 1.09003 * 109.46939 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47748 * 299.99711 * 1 2 3 31 31 H 0.97001 * 120.00213 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47046 * 183.95947 * 13 12 2 33 33 H 1.09005 * 109.47260 * 303.94959 * 13 12 2 34 34 H 1.08995 * 109.47728 * 63.95097 * 13 12 2 35 35 H 1.09002 * 109.47176 * 50.00360 * 14 12 2 36 36 H 1.09004 * 109.47343 * 290.00209 * 14 12 2 37 37 H 0.96998 * 119.99877 * 354.73142 * 17 15 14 38 38 H 1.07992 * 120.03959 * 359.97245 * 19 18 17 39 39 H 1.07995 * 119.96713 * 180.25131 * 20 19 18 40 40 H 1.08001 * 119.92895 * 179.70106 * 21 20 19 41 41 H 1.09002 * 109.47267 * 60.00531 * 24 23 22 42 42 H 1.09004 * 109.46681 * 180.02562 * 24 23 22 43 43 H 1.08995 * 109.47335 * 300.00053 * 24 23 22 44 44 H 1.08000 * 120.02998 * 179.97438 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2304 5 1 2.6532 -1.5885 1.1312 6 6 1.6992 -0.2395 2.4826 7 7 0.9435 0.8301 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.1465 -2.2871 3.6036 10 1 3.1466 -0.1875 4.8164 11 1 1.1660 -1.5869 4.8159 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0353 -1.3080 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5160 -3.5795 16 8 3.1502 -1.5128 -3.4215 17 7 2.3777 0.0430 -4.8018 18 6 3.1362 -0.4596 -5.8649 19 6 4.4032 -0.9788 -5.6314 20 6 5.1469 -1.4792 -6.6819 21 6 4.6363 -1.4529 -7.9670 22 6 3.3775 -0.9319 -8.2034 23 16 2.7313 -0.9014 -9.8423 24 6 3.2705 0.6960 -10.5117 25 8 3.3979 -1.9690 -10.5018 26 8 1.3217 -0.9169 -9.6634 27 6 2.6263 -0.4351 -7.1561 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.7088 1.1612 3.4844 32 1 1.8665 -2.5519 -2.1650 33 1 1.6466 -2.5988 -0.3993 34 1 0.3556 -1.9520 -1.4400 35 1 2.1025 1.1190 -2.2604 36 1 0.6813 0.1054 -2.6088 37 1 1.7802 0.7936 -4.9446 38 1 4.8046 -0.9949 -4.6290 39 1 6.1304 -1.8868 -6.5006 40 1 5.2219 -1.8405 -8.7875 41 1 4.3594 0.7449 -10.5028 42 1 2.9101 0.8013 -11.5351 43 1 2.8656 1.5019 -9.8996 44 1 1.6433 -0.0279 -7.3415 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000161915373.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -81.284455 kcal Electronic energy + Delta-G solvation = -26950.512875 eV Core-core repulsion = 22995.112540 eV Total energy + Delta-G solvation = -3955.400335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -41.70015 -39.86355 -38.37222 -38.11864 -36.95597 -35.89238 -34.72243 -32.34812 -31.61468 -30.56183 -30.19852 -28.77840 -27.27114 -25.90038 -24.58816 -23.60857 -22.01667 -21.00180 -19.96849 -19.11494 -18.59153 -17.99488 -17.38238 -17.20324 -17.01445 -16.82059 -16.77715 -16.42316 -15.93839 -15.66603 -15.52238 -14.86273 -14.79783 -14.42803 -14.31021 -14.11886 -13.92053 -13.88070 -13.46711 -13.31503 -13.11835 -13.07093 -12.92622 -12.79917 -12.71466 -12.60592 -12.57059 -12.32011 -12.15163 -12.06903 -11.91872 -11.71866 -11.51003 -11.03163 -10.72862 -10.49359 -10.29535 -9.30601 -8.89451 -8.12195 -6.21223 -0.84199 -0.19972 0.14295 1.40009 1.42767 1.50406 1.54221 1.82155 1.97591 2.43207 2.47744 3.06864 3.17303 3.22595 3.39731 3.65780 3.83677 4.03661 4.08463 4.17100 4.21822 4.30629 4.38846 4.40268 4.48713 4.57178 4.68173 4.69001 4.81354 4.90634 4.94968 5.02526 5.10962 5.12293 5.19495 5.28134 5.35561 5.49383 5.70055 5.78666 5.85013 6.15225 6.32810 6.43285 6.68315 6.90253 7.11034 7.47440 8.93815 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.030710 B = 0.002059 C = 0.001998 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 911.528084 B =13597.458007 C =14009.055623 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.217 3.783 3 H 0.019 0.981 4 C -0.514 4.514 5 H 0.048 0.952 6 C 0.014 3.986 7 N -0.916 5.916 8 Si 0.955 3.045 9 H -0.275 1.275 10 H -0.279 1.279 11 H -0.279 1.279 12 N -0.536 5.536 13 C 0.041 3.959 14 C 0.037 3.963 15 C 0.519 3.481 16 O -0.537 6.537 17 N -0.665 5.665 18 C 0.121 3.879 19 C -0.091 4.091 20 C -0.122 4.122 21 C -0.047 4.047 22 C -0.642 4.642 23 S 2.508 3.492 24 C -0.621 4.621 25 O -0.975 6.975 26 O -0.978 6.978 27 C -0.059 4.059 28 H 0.035 0.965 29 H 0.030 0.970 30 H 0.064 0.936 31 H 0.262 0.738 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.021 0.979 35 H 0.116 0.884 36 H 0.079 0.921 37 H 0.430 0.570 38 H 0.122 0.878 39 H 0.153 0.847 40 H 0.164 0.836 41 H 0.156 0.844 42 H 0.155 0.845 43 H 0.154 0.846 44 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.671 4.561 -28.123 28.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.110 3.890 3 H 0.037 0.963 4 C -0.552 4.552 5 H 0.066 0.934 6 C -0.184 4.184 7 N -0.557 5.557 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.205 1.205 11 H -0.205 1.205 12 N -0.260 5.260 13 C -0.107 4.107 14 C -0.094 4.094 15 C 0.308 3.692 16 O -0.412 6.412 17 N -0.313 5.313 18 C 0.025 3.975 19 C -0.111 4.111 20 C -0.141 4.141 21 C -0.066 4.066 22 C -0.728 4.728 23 S 2.691 3.309 24 C -0.776 4.776 25 O -0.972 6.972 26 O -0.975 6.975 27 C -0.080 4.080 28 H 0.054 0.946 29 H 0.049 0.951 30 H 0.082 0.918 31 H 0.071 0.929 32 H 0.083 0.917 33 H 0.069 0.931 34 H 0.040 0.960 35 H 0.133 0.867 36 H 0.097 0.903 37 H 0.269 0.731 38 H 0.140 0.860 39 H 0.171 0.829 40 H 0.181 0.819 41 H 0.175 0.825 42 H 0.173 0.827 43 H 0.173 0.827 44 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 5.074 3.256 -28.088 28.727 hybrid contribution -0.486 0.426 1.877 1.985 sum 4.589 3.683 -26.211 26.863 Atomic orbital electron populations 1.22229 0.99729 0.99369 1.00645 1.19139 0.90398 0.93116 0.86337 0.96342 1.21348 1.30471 1.12327 0.91092 0.93358 1.25592 0.95466 0.95860 1.01503 1.69982 1.37766 1.23926 1.23978 0.85550 0.78097 0.78601 0.79620 1.19930 1.20520 1.20531 1.61928 1.59709 1.02879 1.01445 1.22227 0.95922 0.91061 1.01523 1.22003 0.99347 0.99132 0.88913 1.21116 0.80864 0.83295 0.83942 1.90662 1.40758 1.25551 1.84257 1.43454 1.44643 1.36043 1.07192 1.17970 0.91335 1.00102 0.88059 1.21586 0.92658 0.96404 1.00502 1.21454 1.01252 0.99372 0.92027 1.21220 0.93314 0.93704 0.98361 1.30620 1.05761 1.13700 1.22695 1.04896 0.73687 0.78757 0.73582 1.30022 1.15122 1.18114 1.14296 1.93540 1.76419 1.53350 1.73878 1.93544 1.30362 1.88089 1.85491 1.20822 0.99448 0.97498 0.90244 0.94576 0.95133 0.91754 0.92889 0.91718 0.93057 0.96015 0.86655 0.90338 0.73110 0.86014 0.82903 0.81877 0.82549 0.82731 0.82723 0.82017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.35 8.22 71.98 0.59 -6.75 16 2 C 0.22 10.62 2.31 44.16 0.10 10.72 16 3 H 0.02 0.98 7.93 -2.39 -0.02 0.96 16 4 C -0.51 -28.38 7.91 25.60 0.20 -28.17 16 5 H 0.05 2.77 7.12 -2.91 -0.02 2.75 16 6 C 0.01 0.79 5.30 84.65 0.45 1.24 16 7 N -0.92 -51.38 11.32 21.45 0.24 -51.14 16 8 Si 0.95 44.05 29.54 68.60 2.03 46.08 16 9 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 12 N -0.54 -22.91 4.44 -906.05 -4.02 -26.93 16 13 C 0.04 1.70 8.34 127.69 1.06 2.77 16 14 C 0.04 1.19 5.02 85.56 0.43 1.62 16 15 C 0.52 15.83 7.29 87.66 0.64 16.47 16 16 O -0.54 -20.62 12.01 -3.06 -0.04 -20.65 16 17 N -0.67 -14.52 5.34 -303.50 -1.62 -16.14 16 18 C 0.12 2.73 6.28 38.15 0.24 2.97 16 19 C -0.09 -2.25 8.66 22.39 0.19 -2.05 16 20 C -0.12 -2.33 10.04 22.25 0.22 -2.11 16 21 C -0.05 -0.75 9.47 22.29 0.21 -0.54 16 22 C -0.64 -10.27 5.65 22.25 0.13 -10.14 16 23 S 2.51 31.14 5.80 -56.49 -0.33 30.82 16 24 C -0.62 -0.57 10.80 113.37 1.22 0.66 16 25 O -0.97 -18.84 17.12 -127.65 -2.19 -21.02 16 26 O -0.98 -19.60 17.12 -127.65 -2.19 -21.79 16 27 C -0.06 -1.06 9.39 22.39 0.21 -0.85 16 28 H 0.04 1.39 6.91 -2.38 -0.02 1.37 16 29 H 0.03 1.38 6.41 -2.39 -0.02 1.36 16 30 H 0.06 3.31 6.07 -2.39 -0.01 3.29 16 31 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 32 H 0.06 2.64 5.88 -2.39 -0.01 2.62 16 33 H 0.05 2.33 6.76 -2.38 -0.02 2.32 16 34 H 0.02 0.84 6.46 -2.39 -0.02 0.83 16 35 H 0.12 3.32 7.93 -2.39 -0.02 3.30 16 36 H 0.08 2.20 7.06 -2.39 -0.02 2.19 16 37 H 0.43 5.90 8.82 -92.71 -0.82 5.08 16 38 H 0.12 3.57 6.43 -2.91 -0.02 3.55 16 39 H 0.15 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.16 1.83 7.57 -2.91 -0.02 1.81 16 41 H 0.16 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.15 -0.37 8.14 -2.39 -0.02 -0.38 16 43 H 0.15 -0.36 8.14 -2.39 -0.02 -0.38 16 44 H 0.16 2.19 7.57 -2.91 -0.02 2.17 16 Total: -1.00 -80.86 368.39 -1.98 -82.85 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 0.22 Total: 12.11 kcal Atomic # 6 Polarization: -20.09 SS G_CDS: 5.91 Total: -14.18 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -5.40 Total: -94.21 kcal Atomic # 8 Polarization: -59.06 SS G_CDS: -4.41 Total: -63.46 kcal Atomic # 14 Polarization: 44.05 SS G_CDS: 2.03 Total: 46.08 kcal Atomic # 16 Polarization: 31.14 SS G_CDS: -0.33 Total: 30.82 kcal Total: -80.86 -1.98 -82.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000161915373.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.563 kcal (2) G-P(sol) polarization free energy of solvation -80.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds