Wall clock time and date at job start Sat Apr 11 2020 05:56:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09000 * 109.46497 * 2 1 4 4 C 1.52990 * 109.47488 * 239.99224 * 2 1 3 5 5 S 1.81402 * 109.47151 * 64.99720 * 4 2 1 6 6 C 1.81402 * 101.92311 * 179.97438 * 5 4 2 7 7 O 1.42104 * 108.57287 * 65.51460 * 5 4 2 8 8 O 1.42093 * 108.57954 * 294.48909 * 5 4 2 9 9 C 1.50707 * 109.46845 * 119.99088 * 2 1 3 10 10 O 1.21280 * 119.99670 * 91.60761 * 9 2 1 11 11 N 1.34772 * 120.00021 * 271.60631 * 9 2 1 12 12 C 1.46508 * 120.00223 * 3.63214 * 11 9 2 13 13 C 1.50693 * 109.47101 * 92.48965 * 12 11 9 14 14 H 1.08001 * 119.99901 * 359.97438 * 13 12 11 15 15 C 1.37876 * 120.00054 * 180.02562 * 13 12 11 16 16 N 1.31512 * 119.99879 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00173 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46914 * 59.99553 * 17 15 13 19 19 H 1.48495 * 109.47126 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.46770 * 299.99741 * 17 15 13 21 21 C 1.46500 * 120.00220 * 183.63410 * 11 9 2 22 22 C 1.50699 * 109.47162 * 89.99814 * 21 11 9 23 23 C 1.38225 * 119.62078 * 94.73361 * 22 21 11 24 24 C 1.38622 * 119.16307 * 179.75319 * 23 22 21 25 25 C 1.38673 * 118.42201 * 0.50636 * 24 23 22 26 26 C 1.38182 * 119.15849 * 359.73272 * 25 24 23 27 27 N 1.31854 * 119.61597 * 274.99886 * 22 21 11 28 28 H 1.09002 * 109.47687 * 294.21852 * 1 2 3 29 29 H 1.09004 * 109.47253 * 54.22673 * 1 2 3 30 30 H 1.09007 * 109.46870 * 174.22264 * 1 2 3 31 31 H 1.09001 * 109.47333 * 304.99754 * 4 2 1 32 32 H 1.09002 * 109.47528 * 184.99838 * 4 2 1 33 33 H 1.09000 * 109.47191 * 300.00825 * 6 5 4 34 34 H 1.09004 * 109.46662 * 60.00635 * 6 5 4 35 35 H 1.08994 * 109.47097 * 179.97438 * 6 5 4 36 36 H 1.09000 * 109.46853 * 212.48873 * 12 11 9 37 37 H 1.09004 * 109.46827 * 332.48839 * 12 11 9 38 38 H 0.97002 * 120.00011 * 180.02562 * 16 15 13 39 39 H 1.09000 * 109.47480 * 210.00026 * 21 11 9 40 40 H 1.09005 * 109.47071 * 329.99954 * 21 11 9 41 41 H 1.08003 * 120.41257 * 359.97438 * 23 22 21 42 42 H 1.08005 * 120.79139 * 180.26610 * 24 23 22 43 43 H 1.07995 * 120.41933 * 179.70852 * 25 24 23 44 44 H 1.08001 * 119.61353 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0401 -0.7214 -1.2490 5 16 1.5602 0.2152 -2.7266 6 6 2.2553 -0.8025 -4.0576 7 8 2.2382 1.4640 -2.7110 8 8 0.1434 0.1963 -2.8343 9 6 2.0323 -0.7103 1.2307 10 8 2.2622 -1.9005 1.1924 11 7 2.2260 -0.0228 2.3736 12 6 1.8734 1.3975 2.4429 13 6 0.4634 1.5406 2.9551 14 1 -0.1126 0.6614 3.2037 15 6 -0.0917 2.7937 3.1053 16 7 0.6096 3.8641 2.8022 17 14 -1.8398 2.9710 3.7396 18 1 -1.9382 2.3702 5.0940 19 1 -2.1971 4.4106 3.8100 20 1 -2.7733 2.2731 2.8194 21 6 2.7893 -0.6957 3.5466 22 6 4.2916 -0.5804 3.5188 23 6 4.9112 0.4438 4.2100 24 6 6.2939 0.5379 4.1821 25 6 7.0046 -0.3997 3.4480 26 6 6.3160 -1.3929 2.7780 27 7 4.9996 -1.4546 2.8310 28 1 -0.3634 0.4216 0.9372 29 1 -0.3634 0.6008 -0.8338 30 1 -0.3633 -1.0225 -0.1035 31 1 1.6055 -1.7200 -1.2948 32 1 3.1264 -0.7995 -1.2054 33 1 3.3353 -0.8780 -3.9310 34 1 1.8147 -1.7988 -4.0210 35 1 2.0332 -0.3425 -5.0205 36 1 2.5590 1.9095 3.1182 37 1 1.9454 1.8387 1.4487 38 1 0.2192 4.7458 2.9082 39 1 2.4058 -0.2276 4.4532 40 1 2.5054 -1.7480 3.5331 41 1 4.3254 1.1596 4.7676 42 1 6.8054 1.3251 4.7161 43 1 8.0825 -0.3540 3.4002 44 1 6.8621 -2.1266 2.2038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000176763013.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:47 Heat of formation + Delta-G solvation = -66.299817 kcal Electronic energy + Delta-G solvation = -28387.928100 eV Core-core repulsion = 24433.177547 eV Total energy + Delta-G solvation = -3954.750552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.11732 -39.12946 -36.86453 -35.94086 -35.22609 -34.26208 -32.78194 -32.21323 -31.33980 -29.79599 -27.76158 -27.06919 -26.35031 -23.41065 -23.23222 -22.75345 -21.37521 -18.76733 -18.28614 -17.23873 -16.82888 -16.32405 -16.19376 -16.04082 -15.97287 -15.48784 -15.39220 -15.24923 -14.56218 -14.28051 -13.70551 -13.65954 -13.35681 -13.27904 -13.11475 -12.86577 -12.69920 -12.58232 -12.36982 -12.10565 -11.85504 -11.70922 -11.56849 -11.37739 -11.34424 -10.99829 -10.97445 -10.92611 -10.89074 -10.53617 -10.41919 -10.13338 -9.81687 -9.68620 -9.18301 -9.08317 -8.73915 -8.53296 -7.80323 -6.19697 -4.27304 0.03622 1.26156 1.48403 2.81592 3.25114 3.30498 3.30843 3.35747 3.61978 3.81150 4.05765 4.23066 4.33879 4.56500 4.69228 4.73549 4.79032 4.95274 4.98465 5.08146 5.13606 5.22438 5.26687 5.35921 5.50294 5.65264 5.74305 5.78984 5.84849 5.90094 5.98629 6.21323 6.32199 6.35852 6.40258 6.44998 6.69138 6.88701 6.97426 7.15970 7.45862 7.73935 8.01660 8.22990 8.31038 8.76003 8.97564 9.40162 10.86938 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.006958 B = 0.005647 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4023.185857 B = 4956.976013 C = 7932.382485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.091 4.091 3 H 0.110 0.890 4 C -0.587 4.587 5 S 2.417 3.583 6 C -0.660 4.660 7 O -0.937 6.937 8 O -0.933 6.933 9 C 0.532 3.468 10 O -0.552 6.552 11 N -0.589 5.589 12 C 0.233 3.767 13 C -0.540 4.540 14 H 0.064 0.936 15 C 0.068 3.932 16 N -0.887 5.887 17 Si 0.894 3.106 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.273 1.273 21 C 0.167 3.833 22 C 0.119 3.881 23 C -0.154 4.154 24 C -0.080 4.080 25 C -0.181 4.181 26 C 0.091 3.909 27 N -0.461 5.461 28 H 0.101 0.899 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.139 0.861 32 H 0.129 0.871 33 H 0.126 0.874 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.036 0.964 37 H 0.043 0.957 38 H 0.267 0.733 39 H 0.096 0.904 40 H 0.091 0.909 41 H 0.138 0.862 42 H 0.131 0.869 43 H 0.129 0.871 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.086 -7.699 -5.232 13.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.113 4.113 3 H 0.128 0.872 4 C -0.717 4.717 5 S 2.599 3.401 6 C -0.809 4.809 7 O -0.934 6.934 8 O -0.930 6.930 9 C 0.319 3.681 10 O -0.431 6.431 11 N -0.320 5.320 12 C 0.113 3.887 13 C -0.578 4.578 14 H 0.082 0.918 15 C -0.136 4.136 16 N -0.525 5.525 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.198 1.198 21 C 0.043 3.957 22 C -0.020 4.020 23 C -0.175 4.175 24 C -0.106 4.106 25 C -0.202 4.202 26 C -0.067 4.067 27 N -0.171 5.171 28 H 0.120 0.880 29 H 0.097 0.903 30 H 0.078 0.922 31 H 0.158 0.842 32 H 0.148 0.852 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.145 0.855 36 H 0.054 0.946 37 H 0.060 0.940 38 H 0.077 0.923 39 H 0.115 0.885 40 H 0.109 0.891 41 H 0.156 0.844 42 H 0.149 0.851 43 H 0.147 0.853 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 8.272 -7.967 -5.793 12.863 hybrid contribution 0.223 0.303 0.828 0.910 sum 8.495 -7.664 -4.965 12.472 Atomic orbital electron populations 1.22242 0.91075 1.03093 1.06580 1.20935 0.99178 1.00515 0.90720 0.87230 1.30210 1.11729 1.14388 1.15377 1.07992 0.76296 0.77309 0.78531 1.30308 1.13870 1.16856 1.19850 1.93611 1.76280 1.37632 1.85894 1.93591 1.27137 1.86800 1.85469 1.20023 0.76958 0.86856 0.84300 1.90606 1.52725 1.15030 1.84777 1.48121 1.60377 1.13419 1.10069 1.19574 0.96190 0.74169 0.98766 1.21388 0.98469 0.92664 1.45319 0.91794 1.24930 0.98051 0.95618 0.94998 1.69906 1.37202 0.98223 1.47143 0.86606 0.84480 0.77174 0.79567 1.20150 1.21152 1.19831 1.20128 0.85445 1.00018 0.90122 1.21910 0.97584 0.90523 0.91950 1.22133 0.95270 0.99125 1.00925 1.21556 0.94202 0.97868 0.96996 1.22088 1.01040 0.97097 0.99934 1.22746 0.90364 0.96826 0.96755 1.67632 1.07453 1.25877 1.16090 0.88002 0.90312 0.92223 0.84238 0.85235 0.85492 0.85361 0.85505 0.94620 0.93973 0.92333 0.88548 0.89063 0.84370 0.85089 0.85329 0.83329 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.22 8.61 37.16 0.32 -2.90 16 2 C -0.09 -1.69 2.05 -91.77 -0.19 -1.87 16 3 H 0.11 2.13 5.98 -51.93 -0.31 1.82 16 4 C -0.59 -8.13 4.75 37.15 0.18 -7.95 16 5 S 2.42 30.98 5.15 -107.50 -0.55 30.43 16 6 C -0.66 -5.19 10.62 101.05 1.07 -4.11 16 7 O -0.94 -15.65 18.10 -57.83 -1.05 -16.70 16 8 O -0.93 -14.68 15.57 -57.83 -0.90 -15.58 16 9 C 0.53 10.93 6.74 -10.98 -0.07 10.85 16 10 O -0.55 -12.05 15.81 5.56 0.09 -11.96 16 11 N -0.59 -12.16 2.44 -176.43 -0.43 -12.59 16 12 C 0.23 5.33 5.06 -5.19 -0.03 5.30 16 13 C -0.54 -13.33 7.51 -34.44 -0.26 -13.59 16 14 H 0.06 1.59 7.77 -52.49 -0.41 1.18 16 15 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -23.89 13.29 55.43 0.74 -23.16 16 17 Si 0.89 20.12 29.54 -169.99 -5.02 15.10 16 18 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 19 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 C 0.17 3.09 5.75 -5.19 -0.03 3.06 16 22 C 0.12 2.06 6.36 -82.59 -0.53 1.54 16 23 C -0.15 -2.33 9.72 -39.44 -0.38 -2.71 16 24 C -0.08 -1.02 10.18 -39.28 -0.40 -1.41 16 25 C -0.18 -2.17 10.11 -39.44 -0.40 -2.57 16 26 C 0.09 1.26 11.18 -17.55 -0.20 1.07 16 27 N -0.46 -8.06 10.27 -9.47 -0.10 -8.16 16 28 H 0.10 2.13 6.06 -51.93 -0.31 1.81 16 29 H 0.08 1.43 5.80 -51.93 -0.30 1.13 16 30 H 0.06 1.01 8.14 -51.92 -0.42 0.59 16 31 H 0.14 1.70 8.02 -51.92 -0.42 1.29 16 32 H 0.13 1.59 8.14 -51.92 -0.42 1.17 16 33 H 0.13 0.78 8.14 -51.92 -0.42 0.36 16 34 H 0.13 0.77 8.14 -51.92 -0.42 0.34 16 35 H 0.13 0.87 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.04 1.02 5.67 -51.93 -0.29 0.73 16 38 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 39 H 0.10 1.66 7.97 -51.93 -0.41 1.25 16 40 H 0.09 1.74 7.38 -51.93 -0.38 1.35 16 41 H 0.14 1.98 8.06 -52.48 -0.42 1.56 16 42 H 0.13 1.29 8.06 -52.48 -0.42 0.87 16 43 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 44 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 LS Contribution 379.56 15.07 5.72 5.72 Total: -1.00 -34.56 379.56 -8.71 -43.28 By element: Atomic # 1 Polarization: 13.49 SS G_CDS: -6.20 Total: 7.29 kcal Atomic # 6 Polarization: -12.66 SS G_CDS: -1.01 Total: -13.67 kcal Atomic # 7 Polarization: -44.11 SS G_CDS: 0.21 Total: -43.90 kcal Atomic # 8 Polarization: -42.38 SS G_CDS: -1.86 Total: -44.24 kcal Atomic # 14 Polarization: 20.12 SS G_CDS: -5.02 Total: 15.10 kcal Atomic # 16 Polarization: 30.98 SS G_CDS: -0.55 Total: 30.43 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.56 -8.71 -43.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000176763013.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.022 kcal (2) G-P(sol) polarization free energy of solvation -34.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds