Wall clock time and date at job start Sat Apr 11 2020 05:57:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09003 * 109.47209 * 2 1 4 4 C 1.53003 * 109.47162 * 240.00287 * 2 1 3 5 5 S 1.81403 * 109.47326 * 179.97438 * 4 2 1 6 6 C 1.81394 * 102.99937 * 179.97438 * 5 4 2 7 7 O 1.42104 * 109.46888 * 296.38577 * 5 4 2 8 8 N 1.46492 * 109.47440 * 120.00072 * 2 1 3 9 9 C 1.34777 * 120.00434 * 275.00028 * 8 2 1 10 10 O 1.21591 * 119.99393 * 0.02562 * 9 8 2 11 11 N 1.34768 * 120.00297 * 179.97438 * 9 8 2 12 12 C 1.46503 * 120.00179 * 180.02562 * 11 9 8 13 13 C 1.50701 * 109.47448 * 180.02562 * 12 11 9 14 14 C 1.38299 * 119.93217 * 269.73027 * 13 12 11 15 15 C 1.38093 * 120.06953 * 179.72477 * 14 13 12 16 16 C 1.38883 * 119.92808 * 0.56550 * 15 14 13 17 17 O 1.35754 * 120.06438 * 179.68623 * 16 15 14 18 18 C 1.34826 * 116.99724 * 174.49160 * 17 16 15 19 19 H 1.07998 * 120.00100 * 5.04739 * 18 17 16 20 20 C 1.38654 * 119.99970 * 185.05457 * 18 17 16 21 21 N 1.31557 * 120.00012 * 359.97438 * 20 18 17 22 22 Si 1.86803 * 119.99959 * 179.97438 * 20 18 17 23 23 H 1.48499 * 109.46896 * 90.00233 * 22 20 18 24 24 H 1.48505 * 109.47024 * 209.99798 * 22 20 18 25 25 H 1.48496 * 109.47185 * 330.00029 * 22 20 18 26 26 C 1.38871 * 119.86468 * 359.70509 * 16 15 14 27 27 C 1.38101 * 119.93230 * 0.02562 * 26 16 15 28 28 H 1.09003 * 109.47209 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47200 * 299.99803 * 1 2 3 30 30 H 1.09004 * 109.47423 * 59.99868 * 1 2 3 31 31 H 1.08994 * 109.47214 * 300.00349 * 4 2 1 32 32 H 1.09004 * 109.47078 * 59.99634 * 4 2 1 33 33 H 1.09001 * 109.47471 * 60.00144 * 6 5 4 34 34 H 1.09006 * 109.47316 * 179.97438 * 6 5 4 35 35 H 1.08994 * 109.47602 * 300.00055 * 6 5 4 36 36 H 0.97007 * 119.99685 * 95.00057 * 8 2 1 37 37 H 0.97000 * 120.00448 * 0.02562 * 11 9 8 38 38 H 1.09002 * 109.46848 * 59.99850 * 12 11 9 39 39 H 1.09001 * 109.46885 * 300.00464 * 12 11 9 40 40 H 1.08005 * 119.96050 * 359.97425 * 14 13 12 41 41 H 1.07999 * 120.03730 * 180.26989 * 15 14 13 42 42 H 0.97002 * 120.00021 * 179.97438 * 21 20 18 43 43 H 1.08002 * 120.03853 * 179.97438 * 26 16 15 44 44 H 1.07997 * 119.96732 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2493 5 16 3.8540 -0.7206 -1.2497 6 6 4.2620 -1.6050 -2.7800 7 8 4.3271 0.6167 -1.3344 8 7 2.0183 -0.6906 1.1961 9 6 2.1471 -0.0183 2.3571 10 8 1.8574 1.1613 2.4118 11 7 2.5959 -0.6538 3.4575 12 6 2.7354 0.0769 4.7197 13 6 3.2521 -0.8551 5.7853 14 6 2.3630 -1.5676 6.5692 15 6 2.8334 -2.4267 7.5426 16 6 4.2008 -2.5659 7.7419 17 8 4.6662 -3.4049 8.7024 18 6 6.0014 -3.5801 8.7674 19 1 6.6536 -3.0026 8.1290 20 6 6.5373 -4.5019 9.6538 21 7 5.7429 -5.2051 10.4318 22 14 8.3872 -4.7452 9.7434 23 1 8.9604 -3.8161 10.7502 24 1 8.6838 -6.1460 10.1373 25 1 8.9881 -4.4669 8.4143 26 6 5.0909 -1.8449 6.9569 27 6 4.6144 -0.9915 5.9813 28 1 -0.3634 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6766 -1.7488 -1.2494 32 1 1.6766 -0.2073 -2.1393 33 1 3.8427 -1.0697 -3.6319 34 1 5.3451 -1.6657 -2.8869 35 1 3.8434 -2.6106 -2.7411 36 1 2.2491 -1.6318 1.1524 37 1 2.8267 -1.5949 3.4140 38 1 1.7646 0.4708 5.0206 39 1 3.4365 0.9008 4.5870 40 1 1.2996 -1.4550 6.4171 41 1 2.1387 -2.9862 8.1516 42 1 6.1178 -5.8502 11.0516 43 1 6.1548 -1.9507 7.1097 44 1 5.3061 -0.4302 5.3708 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000182460821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:00 Heat of formation + Delta-G solvation = -71.314598 kcal Electronic energy + Delta-G solvation = -26105.165190 eV Core-core repulsion = 22150.197180 eV Total energy + Delta-G solvation = -3954.968010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.12976 -39.10370 -37.08617 -36.23543 -36.02830 -34.32257 -32.41682 -31.72645 -30.26955 -29.59943 -29.30513 -27.74556 -25.87754 -24.69468 -22.07630 -22.02287 -20.83480 -20.60844 -18.68176 -18.06618 -17.83831 -17.06485 -16.66374 -15.98044 -15.46742 -15.29558 -15.05110 -14.69950 -14.63835 -14.48680 -14.28692 -13.89781 -13.70166 -13.55106 -13.37343 -13.32862 -13.07633 -12.97901 -12.77959 -12.63653 -12.35207 -12.10437 -12.01318 -11.68768 -11.41144 -11.36956 -10.96221 -10.78419 -10.67769 -10.51121 -10.49185 -10.18512 -9.43924 -9.41359 -8.91502 -8.83098 -8.59819 -8.27828 -7.32862 -6.53207 -4.12050 1.06940 2.02164 2.13762 2.19895 2.76764 3.08864 3.09497 3.14257 3.22936 3.39555 3.90271 4.17733 4.28537 4.55144 4.59631 4.67163 4.80019 4.93730 5.02081 5.12129 5.16615 5.24384 5.25151 5.41371 5.46413 5.46807 5.67097 5.68533 5.83574 5.92185 5.96440 6.12908 6.30750 6.36266 6.57905 6.62018 6.80796 6.86966 6.98848 7.16181 7.28755 7.35648 7.72074 7.91585 8.03194 8.61663 8.92283 9.60608 10.64303 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014417 B = 0.002086 C = 0.001906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1941.714446 B =13421.314377 C =14685.188817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.184 3.816 3 H 0.093 0.907 4 C -0.462 4.462 5 S 1.249 4.751 6 C -0.496 4.496 7 O -0.842 6.842 8 N -0.752 5.752 9 C 0.702 3.298 10 O -0.592 6.592 11 N -0.736 5.736 12 C 0.197 3.803 13 C -0.214 4.214 14 C -0.053 4.053 15 C -0.196 4.196 16 C 0.160 3.840 17 O -0.174 6.174 18 C -0.393 4.393 19 H 0.094 0.906 20 C 0.040 3.960 21 N -0.860 5.860 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.237 4.237 27 C -0.049 4.049 28 H 0.059 0.941 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.078 0.922 34 H 0.106 0.894 35 H 0.113 0.887 36 H 0.398 0.602 37 H 0.398 0.602 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.112 0.888 41 H 0.118 0.882 42 H 0.271 0.729 43 H 0.128 0.872 44 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.343 1.890 -22.070 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.077 3.923 3 H 0.111 0.889 4 C -0.599 4.599 5 S 1.446 4.554 6 C -0.654 4.654 7 O -0.837 6.837 8 N -0.410 5.410 9 C 0.402 3.598 10 O -0.470 6.470 11 N -0.391 5.391 12 C 0.074 3.926 13 C -0.215 4.215 14 C -0.072 4.072 15 C -0.215 4.215 16 C 0.106 3.894 17 O -0.076 6.076 18 C -0.469 4.469 19 H 0.111 0.889 20 C -0.165 4.165 21 N -0.494 5.494 22 Si 0.766 3.234 23 H -0.198 1.198 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.256 4.256 27 C -0.068 4.068 28 H 0.078 0.922 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.142 0.858 32 H 0.120 0.880 33 H 0.098 0.902 34 H 0.124 0.876 35 H 0.131 0.869 36 H 0.232 0.768 37 H 0.232 0.768 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.130 0.870 41 H 0.136 0.864 42 H 0.081 0.919 43 H 0.146 0.854 44 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -6.059 3.090 -20.983 22.057 hybrid contribution 0.302 -0.114 -1.902 1.929 sum -5.757 2.977 -22.885 23.785 Atomic orbital electron populations 1.22179 0.94679 1.02269 1.02672 1.20217 0.94559 0.96764 0.80714 0.88884 1.28020 1.21769 1.07390 1.02760 1.70865 0.86124 0.97609 1.00789 1.27716 1.08743 1.11003 1.17895 1.93180 1.72795 1.35754 1.81979 1.45324 1.72741 1.13759 1.09140 1.16006 0.78426 0.85107 0.80279 1.90929 1.57045 1.14446 1.84543 1.45504 1.70441 1.14119 1.09060 1.19843 1.00479 0.92514 0.79745 1.19220 0.93614 1.06075 1.02597 1.20533 0.98140 0.94401 0.94145 1.20214 0.92975 1.05118 1.03231 1.19446 0.92720 0.89578 0.87692 1.83979 1.25381 1.54376 1.43897 1.21353 0.78948 1.23034 1.23563 0.88898 1.25316 1.00579 0.95130 0.95450 1.70036 1.35425 1.22637 1.21305 0.85699 0.80412 0.78148 0.79116 1.19825 1.20217 1.19103 1.21160 1.00410 1.02984 1.01086 1.20662 0.94162 0.96019 0.95991 0.92199 0.91462 0.92009 0.85806 0.88046 0.90241 0.87555 0.86855 0.76818 0.76754 0.91737 0.91693 0.86974 0.86442 0.91895 0.85442 0.87297 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.24 9.48 37.15 0.35 -0.89 16 2 C 0.18 1.55 2.63 -67.94 -0.18 1.37 16 3 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 4 C -0.46 -2.34 5.48 37.16 0.20 -2.14 16 5 S 1.25 7.76 13.38 -107.50 -1.44 6.32 16 6 C -0.50 -2.22 10.74 101.05 1.09 -1.13 16 7 O -0.84 -11.81 18.14 -35.23 -0.64 -12.44 16 8 N -0.75 -6.08 4.62 -58.68 -0.27 -6.36 16 9 C 0.70 8.72 8.53 -86.93 -0.74 7.98 16 10 O -0.59 -10.07 16.01 5.29 0.08 -9.99 16 11 N -0.74 -8.35 5.55 -66.41 -0.37 -8.72 16 12 C 0.20 2.65 5.80 -5.19 -0.03 2.62 16 13 C -0.21 -3.24 5.25 -104.57 -0.55 -3.79 16 14 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 15 C -0.20 -3.80 9.99 -39.40 -0.39 -4.19 16 16 C 0.16 3.60 6.65 -39.11 -0.26 3.34 16 17 O -0.17 -4.71 9.76 0.05 0.00 -4.71 16 18 C -0.39 -10.45 9.49 30.89 0.29 -10.16 16 19 H 0.09 2.27 5.20 -52.49 -0.27 2.00 16 20 C 0.04 1.06 5.49 -17.52 -0.10 0.96 16 21 N -0.86 -24.30 13.67 55.48 0.76 -23.54 16 22 Si 0.94 19.64 29.55 -169.99 -5.02 14.62 16 23 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 24 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 25 H -0.27 -5.32 7.11 56.52 0.40 -4.91 16 26 C -0.24 -4.73 9.17 -39.40 -0.36 -5.09 16 27 C -0.05 -0.82 9.69 -39.61 -0.38 -1.20 16 28 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.12 0.21 8.14 -51.93 -0.42 -0.22 16 32 H 0.10 0.54 8.14 -51.92 -0.42 0.12 16 33 H 0.08 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.11 0.49 8.14 -51.92 -0.42 0.07 16 35 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 36 H 0.40 1.64 8.62 -40.82 -0.35 1.28 16 37 H 0.40 3.63 8.48 -40.82 -0.35 3.28 16 38 H 0.06 0.89 8.08 -51.93 -0.42 0.47 16 39 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 41 H 0.12 2.22 8.06 -52.49 -0.42 1.79 16 42 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 43 H 0.13 2.57 5.64 -52.49 -0.30 2.27 16 44 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 LS Contribution 389.38 15.07 5.87 5.87 Total: -1.00 -37.89 389.38 -8.76 -46.65 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: -6.29 Total: 5.84 kcal Atomic # 6 Polarization: -12.10 SS G_CDS: -1.44 Total: -13.55 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: 0.12 Total: -38.62 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -0.55 Total: -27.14 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Atomic # 16 Polarization: 7.76 SS G_CDS: -1.44 Total: 6.32 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -37.89 -8.76 -46.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000182460821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.669 kcal (2) G-P(sol) polarization free energy of solvation -37.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds