Wall clock time and date at job start Sat Apr 11 2020 05:57:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47212 * 2 1 4 4 C 1.50703 * 109.47060 * 120.00003 * 2 1 3 5 5 H 1.08002 * 119.99863 * 120.00120 * 4 2 1 6 6 C 1.37878 * 119.99739 * 299.99527 * 4 2 1 7 7 N 1.31520 * 119.99770 * 179.97438 * 6 4 2 8 8 Si 1.86792 * 120.00119 * 0.02562 * 6 4 2 9 9 H 1.48497 * 109.47690 * 89.99851 * 8 6 4 10 10 H 1.48507 * 109.46868 * 209.99738 * 8 6 4 11 11 H 1.48502 * 109.47127 * 329.99490 * 8 6 4 12 12 N 1.46504 * 109.46745 * 239.99682 * 2 1 3 13 13 C 1.46496 * 120.00092 * 299.99894 * 12 2 1 14 14 S 1.65598 * 119.99852 * 120.00234 * 12 2 1 15 15 O 1.42099 * 106.40324 * 336.45718 * 14 12 2 16 16 O 1.42098 * 106.39966 * 203.53970 * 14 12 2 17 17 C 1.76201 * 107.21957 * 89.99600 * 14 12 2 18 18 C 1.38365 * 119.84952 * 90.00075 * 17 14 12 19 19 C 1.37956 * 120.13939 * 180.02562 * 18 17 14 20 20 C 1.39576 * 119.85752 * 359.97438 * 19 18 17 21 21 C 1.47843 * 120.14573 * 179.97438 * 20 19 18 22 22 O 1.21552 * 120.00029 * 336.26916 * 21 20 19 23 23 N 1.34775 * 120.00037 * 156.54120 * 21 20 19 24 24 C 1.46507 * 119.99832 * 174.28305 * 23 21 20 25 25 C 1.46501 * 120.00074 * 354.28236 * 23 21 20 26 26 C 1.39577 * 119.70825 * 0.25133 * 20 19 18 27 27 C 1.37953 * 119.85293 * 359.52152 * 26 20 19 28 28 H 1.08990 * 109.47091 * 60.00137 * 1 2 3 29 29 H 1.09002 * 109.47270 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46643 * 300.00015 * 1 2 3 31 31 H 0.96995 * 119.99762 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47675 * 270.00248 * 13 12 2 33 33 H 1.09004 * 109.47096 * 30.00083 * 13 12 2 34 34 H 1.09000 * 109.47398 * 149.99896 * 13 12 2 35 35 H 1.07992 * 119.92728 * 359.97438 * 18 17 14 36 36 H 1.08003 * 120.07173 * 179.97438 * 19 18 17 37 37 H 1.08993 * 109.47252 * 0.02562 * 24 23 21 38 38 H 1.09005 * 109.46758 * 120.00128 * 24 23 21 39 39 H 1.08998 * 109.46529 * 239.99907 * 24 23 21 40 40 H 1.08998 * 109.46834 * 95.79874 * 25 23 21 41 41 H 1.08999 * 109.47023 * 215.79486 * 25 23 21 42 42 H 1.08997 * 109.46796 * 335.80170 * 25 23 21 43 43 H 1.08004 * 120.06746 * 179.71721 * 26 20 19 44 44 H 1.07999 * 119.92451 * 180.22905 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 2.1373 -0.8595 3.5566 8 14 0.6249 1.2791 2.6541 9 1 -0.8027 0.8729 2.6998 10 1 0.9762 1.9952 3.9068 11 1 0.8473 2.1766 1.4920 12 7 2.0183 -0.6907 -1.1962 13 6 1.6644 -2.0933 -1.4279 14 16 2.9704 0.1140 -2.2863 15 8 2.6904 1.4971 -2.1194 16 8 2.8226 -0.5648 -3.5259 17 6 4.6444 -0.1183 -1.7881 18 6 5.3623 -1.1991 -2.2687 19 6 6.6732 -1.3871 -1.8822 20 6 7.2753 -0.4838 -1.0048 21 6 8.6795 -0.6795 -0.5859 22 8 9.1772 -1.7877 -0.6266 23 7 9.4063 0.3701 -0.1538 24 6 10.7545 0.1578 0.3788 25 6 8.8481 1.7231 -0.2166 26 6 6.5439 0.6017 -0.5200 27 6 5.2353 0.7807 -0.9181 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.9033 -0.5279 4.4375 32 1 2.4156 -2.7379 -0.9716 33 1 0.6903 -2.3002 -0.9845 34 1 1.6236 -2.2854 -2.5001 35 1 4.8951 -1.8975 -2.9472 36 1 7.2324 -2.2313 -2.2577 37 1 10.9952 -0.9047 0.3456 38 1 11.4745 0.7121 -0.2236 39 1 10.7971 0.5085 1.4099 40 1 8.4082 1.9797 0.7471 41 1 9.6408 2.4325 -0.4545 42 1 8.0801 1.7638 -0.9890 43 1 7.0026 1.3016 0.1627 44 1 4.6695 1.6223 -0.5467 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000195222388.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:23 Heat of formation + Delta-G solvation = -64.880804 kcal Electronic energy + Delta-G solvation = -28409.833582 eV Core-core repulsion = 24455.144563 eV Total energy + Delta-G solvation = -3954.689019 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.66417 -39.48710 -38.44517 -38.09094 -36.97348 -36.90055 -34.51336 -32.96791 -32.28366 -31.78472 -28.97447 -27.74382 -27.35626 -26.91451 -24.65254 -23.92238 -22.65095 -21.06794 -20.11016 -19.09000 -18.72551 -18.46937 -18.28412 -17.65693 -17.23505 -16.93541 -16.54977 -15.97764 -15.75388 -15.48228 -15.29536 -15.02661 -14.79321 -14.54392 -14.46102 -14.18329 -14.04138 -13.97306 -13.80854 -13.52884 -13.42585 -13.33529 -13.20134 -13.06245 -12.97032 -12.90288 -12.74810 -12.22639 -12.15077 -12.01376 -11.99283 -11.43356 -11.34103 -11.17139 -10.73251 -10.52474 -10.13927 -9.82458 -9.75237 -8.26390 -6.31312 -0.83998 -0.51799 0.16292 1.34959 1.38674 1.42619 1.50559 1.83076 1.97589 2.34330 2.42188 2.73012 3.08370 3.20419 3.24963 3.64235 3.74377 4.01629 4.05709 4.19918 4.22750 4.38642 4.43523 4.44684 4.48545 4.66223 4.68078 4.72408 4.78011 4.80307 4.82287 4.84063 4.90644 4.91521 4.92572 5.01362 5.12482 5.18918 5.34001 5.48846 5.58370 5.61078 5.82457 6.07613 6.35681 6.74951 6.85183 7.34199 8.89295 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011706 B = 0.004257 C = 0.003577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2391.367312 B = 6575.628559 C = 7826.872374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.238 3.762 3 H 0.054 0.946 4 C -0.518 4.518 5 H 0.049 0.951 6 C 0.026 3.974 7 N -0.940 5.940 8 Si 0.926 3.074 9 H -0.263 1.263 10 H -0.298 1.298 11 H -0.244 1.244 12 N -0.980 5.980 13 C 0.088 3.912 14 S 2.699 3.301 15 O -0.979 6.979 16 O -0.973 6.973 17 C -0.658 4.658 18 C -0.034 4.034 19 C -0.092 4.092 20 C -0.096 4.096 21 C 0.551 3.449 22 O -0.571 6.571 23 N -0.610 5.610 24 C 0.075 3.925 25 C 0.049 3.951 26 C -0.118 4.118 27 C -0.033 4.033 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.044 0.956 31 H 0.266 0.734 32 H 0.047 0.953 33 H 0.084 0.916 34 H 0.091 0.909 35 H 0.161 0.839 36 H 0.150 0.850 37 H 0.067 0.933 38 H 0.087 0.913 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.103 0.897 42 H 0.088 0.912 43 H 0.182 0.818 44 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.645 5.975 -9.259 15.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.132 3.868 3 H 0.072 0.928 4 C -0.558 4.558 5 H 0.067 0.933 6 C -0.173 4.173 7 N -0.580 5.580 8 Si 0.753 3.247 9 H -0.189 1.189 10 H -0.226 1.226 11 H -0.168 1.168 12 N -0.818 5.818 13 C -0.057 4.057 14 S 2.791 3.209 15 O -0.970 6.970 16 O -0.963 6.963 17 C -0.745 4.745 18 C -0.053 4.053 19 C -0.112 4.112 20 C -0.099 4.099 21 C 0.340 3.660 22 O -0.452 6.452 23 N -0.342 5.342 24 C -0.066 4.066 25 C -0.092 4.092 26 C -0.136 4.136 27 C -0.052 4.052 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.066 0.934 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.178 0.822 36 H 0.167 0.833 37 H 0.086 0.914 38 H 0.105 0.895 39 H 0.101 0.899 40 H 0.100 0.900 41 H 0.121 0.879 42 H 0.106 0.894 43 H 0.199 0.801 44 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 10.657 5.882 -9.811 15.634 hybrid contribution 0.118 -0.027 1.230 1.236 sum 10.775 5.855 -8.582 14.968 Atomic orbital electron populations 1.22405 0.96956 1.02505 1.00244 1.18966 0.92419 0.92840 0.82548 0.92807 1.21378 1.31419 1.13168 0.89811 0.93256 1.25605 0.96944 0.99328 0.95421 1.70019 1.47263 1.42134 0.98588 0.86208 0.79878 0.80855 0.77784 1.18880 1.22579 1.16802 1.57087 1.63857 1.22872 1.38002 1.21578 1.02487 0.79694 1.01913 1.01530 0.73505 0.72939 0.72890 1.93519 1.84361 1.32492 1.86589 1.93509 1.86322 1.75573 1.40942 1.31269 1.25714 1.05485 1.12036 1.21076 0.93854 0.94376 0.95975 1.21470 0.94913 0.98521 0.96283 1.20292 0.93969 0.96788 0.98874 1.18493 0.85769 0.84491 0.77245 1.90745 1.72620 1.25637 1.56161 1.47740 1.17300 1.07789 1.61355 1.21910 0.81221 1.03449 1.00045 1.22748 1.01657 0.81307 1.03463 1.22455 0.94031 0.97382 0.99732 1.21144 0.95216 0.97094 0.91782 0.92023 0.91200 0.93749 0.92506 0.93404 0.89760 0.89082 0.82177 0.83271 0.91424 0.89471 0.89920 0.89959 0.87902 0.89376 0.80085 0.83146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.27 8.65 71.98 0.62 -5.65 16 2 C 0.24 10.22 2.21 44.25 0.10 10.32 16 3 H 0.05 2.38 5.97 -2.39 -0.01 2.37 16 4 C -0.52 -26.63 8.95 25.60 0.23 -26.40 16 5 H 0.05 2.81 7.89 -2.91 -0.02 2.79 16 6 C 0.03 1.39 5.45 84.65 0.46 1.85 16 7 N -0.94 -55.01 13.96 21.45 0.30 -54.71 16 8 Si 0.93 41.28 24.37 68.60 1.67 42.95 16 9 H -0.26 -11.13 6.87 99.48 0.68 -10.45 16 10 H -0.30 -13.39 7.11 99.48 0.71 -12.68 16 11 H -0.24 -10.18 6.53 99.48 0.65 -9.53 16 12 N -0.98 -36.44 3.06 -520.43 -1.59 -38.04 16 13 C 0.09 2.82 9.90 127.77 1.26 4.09 16 14 S 2.70 94.43 5.68 -56.49 -0.32 94.10 16 15 O -0.98 -37.99 15.83 -128.00 -2.03 -40.02 16 16 O -0.97 -34.25 15.87 -128.00 -2.03 -36.28 16 17 C -0.66 -21.29 5.98 22.33 0.13 -21.15 16 18 C -0.03 -0.99 9.50 22.23 0.21 -0.78 16 19 C -0.09 -2.65 9.59 22.53 0.22 -2.43 16 20 C -0.10 -2.72 5.51 -20.09 -0.11 -2.83 16 21 C 0.55 15.52 7.50 86.79 0.65 16.17 16 22 O -0.57 -19.85 15.93 -3.88 -0.06 -19.91 16 23 N -0.61 -12.20 3.27 -875.35 -2.87 -15.07 16 24 C 0.08 1.16 10.71 127.77 1.37 2.53 16 25 C 0.05 0.63 8.73 127.77 1.12 1.74 16 26 C -0.12 -3.08 7.54 22.53 0.17 -2.91 16 27 C -0.03 -1.01 9.50 22.23 0.21 -0.80 16 28 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 29 H 0.07 2.53 6.66 -2.39 -0.02 2.52 16 30 H 0.04 1.77 3.27 -2.39 -0.01 1.76 16 31 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 32 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.08 2.60 6.43 -2.39 -0.02 2.59 16 34 H 0.09 2.46 7.02 -2.39 -0.02 2.45 16 35 H 0.16 4.02 7.60 -2.91 -0.02 4.00 16 36 H 0.15 3.90 7.83 -2.91 -0.02 3.87 16 37 H 0.07 1.36 6.91 -2.39 -0.02 1.34 16 38 H 0.09 0.91 8.14 -2.38 -0.02 0.89 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.08 0.87 7.12 -2.39 -0.02 0.85 16 41 H 0.10 0.73 8.11 -2.39 -0.02 0.71 16 42 H 0.09 1.23 5.12 -2.39 -0.01 1.22 16 43 H 0.18 3.48 4.37 -2.91 -0.01 3.47 16 44 H 0.15 4.40 7.60 -2.91 -0.02 4.38 16 Total: -1.00 -72.90 361.02 0.67 -72.23 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: 0.95 Total: 20.99 kcal Atomic # 6 Polarization: -32.90 SS G_CDS: 6.64 Total: -26.25 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -4.16 Total: -107.82 kcal Atomic # 8 Polarization: -92.09 SS G_CDS: -4.12 Total: -96.21 kcal Atomic # 14 Polarization: 41.28 SS G_CDS: 1.67 Total: 42.95 kcal Atomic # 16 Polarization: 94.43 SS G_CDS: -0.32 Total: 94.10 kcal Total: -72.90 0.67 -72.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000195222388.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.352 kcal (2) G-P(sol) polarization free energy of solvation -72.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds