Wall clock time and date at job start Sat Apr 11 2020 05:57:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 120.00169 * 2 1 4 4 O 1.21283 * 119.99726 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99998 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47103 * 299.99593 * 5 3 2 7 7 C 1.52997 * 109.47376 * 60.00018 * 5 3 2 8 8 C 1.53004 * 109.46965 * 179.97438 * 5 3 2 9 9 N 1.46497 * 109.47072 * 175.00087 * 8 5 3 10 10 C 1.46510 * 119.99744 * 275.00007 * 9 8 5 11 11 S 1.65594 * 120.00416 * 95.00178 * 9 8 5 12 12 O 1.42104 * 106.40524 * 203.54245 * 11 9 8 13 13 O 1.42106 * 106.40125 * 336.46099 * 11 9 8 14 14 C 1.76202 * 107.22046 * 89.99625 * 11 9 8 15 15 C 1.38632 * 119.75015 * 269.73337 * 14 11 9 16 16 C 1.37620 * 120.24676 * 179.71842 * 15 14 11 17 17 C 1.40716 * 119.74299 * 0.57044 * 16 15 14 18 18 C 1.41400 * 120.24320 * 179.67980 * 17 16 15 19 19 H 1.08002 * 120.00003 * 204.40744 * 18 17 16 20 20 C 1.39935 * 119.99894 * 24.40774 * 18 17 16 21 21 N 1.30825 * 120.00087 * 17.84741 * 20 18 17 22 22 Si 1.86803 * 120.00189 * 197.84580 * 20 18 17 23 23 H 1.48500 * 109.47377 * 89.99906 * 22 20 18 24 24 H 1.48497 * 109.47656 * 210.00256 * 22 20 18 25 25 H 1.48504 * 109.46888 * 330.00024 * 22 20 18 26 26 C 1.40718 * 119.51363 * 359.70170 * 17 16 15 27 27 C 1.37619 * 119.74278 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.47446 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47222 * 300.00471 * 1 2 3 30 30 H 1.09008 * 109.47372 * 59.99779 * 1 2 3 31 31 H 0.96996 * 120.00367 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47473 * 180.02562 * 7 5 3 33 33 H 1.09004 * 109.47491 * 59.99808 * 7 5 3 34 34 H 1.09004 * 109.47326 * 300.00448 * 7 5 3 35 35 H 1.08999 * 109.47416 * 294.99844 * 8 5 3 36 36 H 1.09000 * 109.46548 * 55.00142 * 8 5 3 37 37 H 1.09002 * 109.46759 * 90.00327 * 10 9 8 38 38 H 1.09000 * 109.46907 * 209.99537 * 10 9 8 39 39 H 1.08996 * 109.47178 * 330.00172 * 10 9 8 40 40 H 1.08002 * 119.87576 * 359.97438 * 15 14 11 41 41 H 1.07997 * 120.12773 * 180.27803 * 16 15 14 42 42 H 0.97001 * 119.99977 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.12881 * 179.97438 * 26 17 16 44 44 H 1.08001 * 119.87632 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0095 0.6532 0.8891 7 6 4.1554 0.4462 -1.2501 8 6 4.1559 2.6097 -0.0011 9 7 5.6159 2.6115 0.1187 10 6 6.2425 2.5388 1.4411 11 16 6.5582 2.6956 -1.2404 12 8 7.8174 2.1375 -0.8909 13 8 5.7620 2.2075 -2.3115 14 6 6.8449 4.4024 -1.5715 15 6 5.9702 5.1009 -2.3893 16 6 6.1812 6.4356 -2.6501 17 6 7.2964 7.0880 -2.0927 18 6 7.5271 8.4574 -2.3591 19 1 8.5262 8.8609 -2.2864 20 6 6.4607 9.2898 -2.7171 21 7 5.2302 8.9176 -2.4742 22 14 6.7940 10.9325 -3.5416 23 1 6.8215 10.7503 -5.0151 24 1 5.7210 11.8939 -3.1817 25 1 8.1047 11.4594 -3.0835 26 6 8.1807 6.3675 -1.2687 27 6 7.9469 5.0349 -1.0170 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 5.2453 0.4458 -1.2503 33 1 3.7917 0.9602 -2.1399 34 1 3.7920 -0.5814 -1.2503 35 1 3.8672 3.0969 -0.9325 36 1 3.7215 3.1489 0.8408 37 1 6.4040 1.4948 1.7097 38 1 7.1993 3.0604 1.4189 39 1 5.5903 3.0070 2.1783 40 1 5.1177 4.5967 -2.8201 41 1 5.4960 6.9790 -3.2839 42 1 4.4911 9.4948 -2.7220 43 1 9.0400 6.8583 -0.8361 44 1 8.6245 4.4798 -0.3852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000224004991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:30 Heat of formation + Delta-G solvation = -98.621582 kcal Electronic energy + Delta-G solvation = -27960.426217 eV Core-core repulsion = 24004.274087 eV Total energy + Delta-G solvation = -3956.152129 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.97801 -37.55104 -36.79930 -36.41274 -35.13532 -34.73703 -34.02378 -32.71933 -30.23709 -29.45109 -27.55577 -26.82496 -25.78919 -25.18935 -22.43430 -21.45245 -21.10867 -20.10034 -18.40814 -17.65329 -17.52676 -17.13333 -16.48289 -16.08072 -15.62068 -15.50244 -15.33825 -14.45287 -14.15721 -14.07856 -13.86608 -13.39319 -13.28930 -13.19376 -12.94906 -12.72544 -12.52043 -12.46908 -12.21486 -12.14668 -12.03675 -11.75406 -11.50621 -11.40980 -11.33592 -11.20170 -11.16601 -11.01724 -10.85739 -10.76261 -10.35903 -9.84666 -9.72904 -9.57517 -9.49266 -9.29032 -8.72145 -7.93623 -7.68406 -7.12187 -4.78244 1.20009 2.27224 2.58073 2.89315 2.92233 2.94319 2.95512 3.06343 3.64533 3.68062 4.25495 4.50296 4.62593 4.80425 4.90072 4.98795 5.10518 5.21952 5.30337 5.32502 5.41997 5.58309 5.65081 5.72295 5.79017 5.88432 5.91993 6.04767 6.07288 6.14517 6.22965 6.30058 6.44501 6.68080 6.70543 6.82390 7.01281 7.07225 7.29810 7.35784 7.44202 7.65613 7.78960 7.98638 8.11747 8.33985 8.53140 8.67093 9.79206 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.003207 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.957550 B = 8729.653800 C = 9992.631373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.738 5.738 3 C 0.522 3.478 4 O -0.534 6.534 5 C -0.131 4.131 6 H 0.099 0.901 7 C -0.138 4.138 8 C 0.147 3.853 9 N -1.006 6.006 10 C 0.097 3.903 11 S 2.688 3.312 12 O -0.984 6.984 13 O -0.975 6.975 14 C -0.788 4.788 15 C -0.015 4.015 16 C -0.182 4.182 17 C 0.139 3.861 18 C -0.435 4.435 19 H 0.088 0.912 20 C 0.072 3.928 21 N -0.764 5.764 22 Si 0.918 3.082 23 H -0.263 1.263 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.239 4.239 27 C 0.000 4.000 28 H 0.073 0.927 29 H 0.058 0.942 30 H 0.060 0.940 31 H 0.402 0.598 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.071 0.929 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.123 0.877 42 H 0.289 0.711 43 H 0.100 0.900 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.034 -13.136 5.892 15.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.391 5.391 3 C 0.308 3.692 4 O -0.410 6.410 5 C -0.155 4.155 6 H 0.117 0.883 7 C -0.195 4.195 8 C 0.021 3.979 9 N -0.841 5.841 10 C -0.048 4.048 11 S 2.788 3.212 12 O -0.975 6.975 13 O -0.965 6.965 14 C -0.884 4.884 15 C -0.035 4.035 16 C -0.203 4.203 17 C 0.135 3.865 18 C -0.462 4.462 19 H 0.106 0.894 20 C -0.151 4.151 21 N -0.386 5.386 22 Si 0.741 3.259 23 H -0.188 1.188 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.259 4.259 27 C -0.021 4.021 28 H 0.091 0.909 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.235 0.765 32 H 0.080 0.920 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.109 0.891 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.121 0.879 41 H 0.140 0.860 42 H 0.101 0.899 43 H 0.118 0.882 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.461 -13.051 5.464 15.554 hybrid contribution 0.128 1.070 -0.072 1.080 sum -6.333 -11.981 5.393 14.586 Atomic orbital electron populations 1.21521 0.79803 1.01978 1.02392 1.45825 1.07643 1.08885 1.76725 1.20639 0.89923 0.83507 0.75096 1.90730 1.70472 1.31185 1.48633 1.21790 0.91238 1.00691 1.01732 0.88273 1.21903 1.01963 0.98903 0.96777 1.20975 0.78717 0.93540 1.04683 1.57704 1.15229 1.89746 1.21406 1.21390 0.98248 1.01228 0.83982 1.01526 0.72215 0.75340 0.72138 1.93478 1.41701 1.78445 1.83845 1.93515 1.70069 1.80106 1.52828 1.29212 1.10986 1.23706 1.24504 1.20257 0.95115 0.94489 0.93648 1.21340 1.01393 0.92912 1.04620 1.17858 0.90018 0.92702 0.85893 1.19951 0.95624 0.93417 1.37254 0.89419 1.26139 0.94385 1.01298 0.93240 1.69821 1.00114 1.37453 1.31255 0.86139 0.79694 0.79766 0.80310 1.18787 1.19864 1.18210 1.21048 1.03814 0.94553 1.06516 1.20157 0.93084 0.94364 0.94456 0.90856 0.92313 0.92175 0.76478 0.91969 0.90054 0.92985 0.89072 0.89718 0.93105 0.90986 0.91318 0.87873 0.85964 0.89942 0.88192 0.87932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.68 10.70 59.84 0.64 1.32 16 2 N -0.74 -6.65 5.61 -67.08 -0.38 -7.03 16 3 C 0.52 6.67 7.15 -10.98 -0.08 6.59 16 4 O -0.53 -8.96 15.92 5.55 0.09 -8.87 16 5 C -0.13 -1.60 2.93 -91.77 -0.27 -1.87 16 6 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 7 C -0.14 -1.75 7.52 37.16 0.28 -1.47 16 8 C 0.15 2.19 4.34 -4.04 -0.02 2.17 16 9 N -1.01 -15.63 2.91 -121.75 -0.35 -15.98 16 10 C 0.10 1.24 10.33 59.85 0.62 1.86 16 11 S 2.69 51.61 4.81 -107.50 -0.52 51.10 16 12 O -0.98 -20.45 16.33 -57.17 -0.93 -21.39 16 13 O -0.97 -19.53 12.66 -57.17 -0.72 -20.25 16 14 C -0.79 -17.63 6.00 -39.29 -0.24 -17.87 16 15 C -0.01 -0.35 9.49 -39.66 -0.38 -0.73 16 16 C -0.18 -4.65 8.70 -38.87 -0.34 -4.98 16 17 C 0.14 3.57 5.58 -106.82 -0.60 2.98 16 18 C -0.44 -10.79 9.05 -37.74 -0.34 -11.13 16 19 H 0.09 2.06 7.91 -52.49 -0.41 1.64 16 20 C 0.07 1.67 5.14 -17.35 -0.09 1.58 16 21 N -0.76 -18.44 10.95 55.55 0.61 -17.83 16 22 Si 0.92 17.25 29.60 -169.99 -5.03 12.22 16 23 H -0.26 -4.92 7.11 56.52 0.40 -4.52 16 24 H -0.27 -5.03 7.11 56.52 0.40 -4.62 16 25 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 26 C -0.24 -5.71 9.80 -38.87 -0.38 -6.09 16 27 C 0.00 -0.01 9.49 -39.66 -0.38 -0.39 16 28 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.54 8.14 -51.92 -0.42 0.11 16 31 H 0.40 2.43 8.25 -40.82 -0.34 2.10 16 32 H 0.06 0.88 5.78 -51.93 -0.30 0.58 16 33 H 0.08 1.20 7.45 -51.93 -0.39 0.81 16 34 H 0.05 0.48 7.56 -51.93 -0.39 0.09 16 35 H 0.09 1.52 7.61 -51.93 -0.40 1.13 16 36 H 0.08 1.20 7.78 -51.93 -0.40 0.80 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 38 H 0.07 0.95 7.79 -51.93 -0.40 0.55 16 39 H 0.07 0.74 7.94 -51.93 -0.41 0.32 16 40 H 0.10 2.27 7.59 -52.49 -0.40 1.87 16 41 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 42 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 43 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 44 H 0.10 2.07 7.60 -52.49 -0.40 1.68 16 LS Contribution 372.79 15.07 5.62 5.62 Total: -1.00 -31.72 372.79 -9.42 -41.14 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.24 Total: 9.32 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -1.56 Total: -28.04 kcal Atomic # 7 Polarization: -40.72 SS G_CDS: -0.12 Total: -40.84 kcal Atomic # 8 Polarization: -48.94 SS G_CDS: -1.57 Total: -50.51 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Atomic # 16 Polarization: 51.61 SS G_CDS: -0.52 Total: 51.10 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.72 -9.42 -41.14 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224004991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.478 kcal (2) G-P(sol) polarization free energy of solvation -31.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.143 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds