Wall clock time and date at job start Sat Apr 11 2020 05:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34784 * 120.00169 * 2 1 4 4 O 1.21283 * 119.99726 * 359.97438 * 3 2 1 5 5 C 1.50695 * 119.99998 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.47103 * 299.99593 * 5 3 2 7 7 C 1.52997 * 109.47376 * 60.00018 * 5 3 2 8 8 C 1.53004 * 109.46965 * 179.97438 * 5 3 2 9 9 N 1.46497 * 109.47072 * 175.00087 * 8 5 3 10 10 C 1.46510 * 119.99744 * 275.00007 * 9 8 5 11 11 S 1.65594 * 120.00416 * 95.00178 * 9 8 5 12 12 O 1.42104 * 106.40524 * 203.54245 * 11 9 8 13 13 O 1.42106 * 106.40125 * 336.46099 * 11 9 8 14 14 C 1.76202 * 107.22046 * 89.99625 * 11 9 8 15 15 C 1.38632 * 119.75015 * 269.73337 * 14 11 9 16 16 C 1.37620 * 120.24676 * 179.71842 * 15 14 11 17 17 C 1.40716 * 119.74299 * 0.57044 * 16 15 14 18 18 C 1.41400 * 120.24320 * 179.67980 * 17 16 15 19 19 H 1.08002 * 120.00003 * 204.40744 * 18 17 16 20 20 C 1.39935 * 119.99894 * 24.40774 * 18 17 16 21 21 N 1.30825 * 120.00087 * 17.84741 * 20 18 17 22 22 Si 1.86803 * 120.00189 * 197.84580 * 20 18 17 23 23 H 1.48500 * 109.47377 * 89.99906 * 22 20 18 24 24 H 1.48497 * 109.47656 * 210.00256 * 22 20 18 25 25 H 1.48504 * 109.46888 * 330.00024 * 22 20 18 26 26 C 1.40718 * 119.51363 * 359.70170 * 17 16 15 27 27 C 1.37619 * 119.74278 * 0.02562 * 26 17 16 28 28 H 1.08998 * 109.47446 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.47222 * 300.00471 * 1 2 3 30 30 H 1.09008 * 109.47372 * 59.99779 * 1 2 3 31 31 H 0.96996 * 120.00367 * 180.02562 * 2 1 3 32 32 H 1.08996 * 109.47473 * 180.02562 * 7 5 3 33 33 H 1.09004 * 109.47491 * 59.99808 * 7 5 3 34 34 H 1.09004 * 109.47326 * 300.00448 * 7 5 3 35 35 H 1.08999 * 109.47416 * 294.99844 * 8 5 3 36 36 H 1.09000 * 109.46548 * 55.00142 * 8 5 3 37 37 H 1.09002 * 109.46759 * 90.00327 * 10 9 8 38 38 H 1.09000 * 109.46907 * 209.99537 * 10 9 8 39 39 H 1.08996 * 109.47178 * 330.00172 * 10 9 8 40 40 H 1.08002 * 119.87576 * 359.97438 * 15 14 11 41 41 H 1.07997 * 120.12773 * 180.27803 * 16 15 14 42 42 H 0.97001 * 119.99977 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.12881 * 179.97438 * 26 17 16 44 44 H 1.08001 * 119.87632 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5325 2.2176 -0.0005 5 6 3.6458 1.1672 -0.0006 6 1 4.0095 0.6532 0.8891 7 6 4.1554 0.4462 -1.2501 8 6 4.1559 2.6097 -0.0011 9 7 5.6159 2.6115 0.1187 10 6 6.2425 2.5388 1.4411 11 16 6.5582 2.6956 -1.2404 12 8 7.8174 2.1375 -0.8909 13 8 5.7620 2.2075 -2.3115 14 6 6.8449 4.4024 -1.5715 15 6 5.9702 5.1009 -2.3893 16 6 6.1812 6.4356 -2.6501 17 6 7.2964 7.0880 -2.0927 18 6 7.5271 8.4574 -2.3591 19 1 8.5262 8.8609 -2.2864 20 6 6.4607 9.2898 -2.7171 21 7 5.2302 8.9176 -2.4742 22 14 6.7940 10.9325 -3.5416 23 1 6.8215 10.7503 -5.0151 24 1 5.7210 11.8939 -3.1817 25 1 8.1047 11.4594 -3.0835 26 6 8.1807 6.3675 -1.2687 27 6 7.9469 5.0349 -1.0170 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.9500 -0.8400 -0.0004 32 1 5.2453 0.4458 -1.2503 33 1 3.7917 0.9602 -2.1399 34 1 3.7920 -0.5814 -1.2503 35 1 3.8672 3.0969 -0.9325 36 1 3.7215 3.1489 0.8408 37 1 6.4040 1.4948 1.7097 38 1 7.1993 3.0604 1.4189 39 1 5.5903 3.0070 2.1783 40 1 5.1177 4.5967 -2.8201 41 1 5.4960 6.9790 -3.2839 42 1 4.4911 9.4948 -2.7220 43 1 9.0400 6.8583 -0.8361 44 1 8.6245 4.4798 -0.3852 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000224004991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:29 Heat of formation + Delta-G solvation = -120.738062 kcal Electronic energy + Delta-G solvation = -27961.385259 eV Core-core repulsion = 24004.274087 eV Total energy + Delta-G solvation = -3957.111172 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.97586 -39.39251 -38.25075 -37.72563 -36.74093 -35.81981 -35.64375 -33.77543 -32.07754 -31.31266 -28.54203 -27.74953 -27.56067 -26.27608 -23.53486 -23.24365 -22.92972 -21.06490 -19.84101 -19.44679 -18.80420 -18.54645 -17.87227 -17.23032 -17.12552 -16.75434 -16.45350 -15.88835 -15.65967 -15.32131 -15.08294 -15.00697 -14.74543 -14.29531 -14.17036 -14.00827 -13.97101 -13.80916 -13.59001 -13.41055 -13.25868 -13.07092 -13.00188 -12.94465 -12.89850 -12.70796 -12.59349 -12.41875 -12.21630 -11.96423 -11.90772 -11.56433 -11.30338 -11.24915 -10.86936 -10.11382 -10.00097 -9.77903 -9.57196 -8.88315 -6.66415 -0.33728 0.47432 1.03449 1.34346 1.42464 1.49986 1.60520 2.07033 2.10441 2.36088 2.52289 2.93688 3.49109 3.52588 3.65880 3.78129 3.92271 4.16755 4.26938 4.29259 4.33579 4.51645 4.58773 4.65507 4.73520 4.80288 4.84737 4.85980 4.92751 4.94605 4.97645 4.99370 5.08064 5.14181 5.22572 5.40016 5.46553 5.49913 5.57097 5.65277 5.77567 5.92032 6.13606 6.47527 6.53913 6.66593 6.79543 7.25287 8.06756 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014497 B = 0.003207 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.957550 B = 8729.653800 C = 9992.631373 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.721 5.721 3 C 0.520 3.480 4 O -0.584 6.584 5 C -0.123 4.123 6 H 0.135 0.865 7 C -0.139 4.139 8 C 0.142 3.858 9 N -0.997 5.997 10 C 0.084 3.916 11 S 2.716 3.284 12 O -0.994 6.994 13 O -0.984 6.984 14 C -0.803 4.803 15 C -0.021 4.021 16 C -0.209 4.209 17 C 0.110 3.890 18 C -0.466 4.466 19 H 0.093 0.907 20 C 0.033 3.967 21 N -0.797 5.797 22 Si 0.993 3.007 23 H -0.260 1.260 24 H -0.264 1.264 25 H -0.252 1.252 26 C -0.257 4.257 27 C -0.004 4.004 28 H 0.113 0.887 29 H 0.051 0.949 30 H 0.044 0.956 31 H 0.419 0.581 32 H 0.047 0.953 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.091 0.909 40 H 0.111 0.889 41 H 0.109 0.891 42 H 0.298 0.702 43 H 0.113 0.887 44 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.198 -14.927 7.128 17.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.373 5.373 3 C 0.306 3.694 4 O -0.464 6.464 5 C -0.146 4.146 6 H 0.153 0.847 7 C -0.197 4.197 8 C 0.016 3.984 9 N -0.835 5.835 10 C -0.061 4.061 11 S 2.812 3.188 12 O -0.985 6.985 13 O -0.975 6.975 14 C -0.895 4.895 15 C -0.041 4.041 16 C -0.229 4.229 17 C 0.106 3.894 18 C -0.493 4.493 19 H 0.111 0.889 20 C -0.186 4.186 21 N -0.420 5.420 22 Si 0.812 3.188 23 H -0.185 1.185 24 H -0.188 1.188 25 H -0.175 1.175 26 C -0.277 4.277 27 C -0.024 4.024 28 H 0.131 0.869 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.256 0.744 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.109 0.891 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.097 0.903 38 H 0.084 0.916 39 H 0.109 0.891 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.109 0.891 43 H 0.131 0.869 44 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.604 -14.863 6.698 17.589 hybrid contribution 0.101 1.428 -0.375 1.480 sum -6.503 -13.435 6.323 16.210 Atomic orbital electron populations 1.21681 0.78809 1.04277 1.01337 1.45724 1.08353 1.08557 1.74688 1.20738 0.90133 0.83801 0.74697 1.90717 1.71295 1.33094 1.51247 1.21712 0.90971 0.98853 1.03039 0.84708 1.21893 1.01006 1.00992 0.95818 1.21042 0.78034 0.95708 1.03627 1.57360 1.15257 1.89310 1.21565 1.21745 0.98283 1.03386 0.82660 1.00765 0.72011 0.73500 0.72504 1.93458 1.42893 1.77879 1.84247 1.93509 1.70144 1.79536 1.54290 1.29857 1.10330 1.25821 1.23452 1.20434 0.95685 0.94169 0.93847 1.21355 1.02005 0.93825 1.05721 1.18214 0.90657 0.93728 0.86762 1.20237 0.96495 0.93636 1.38890 0.88905 1.27045 0.93695 1.04876 0.93030 1.69862 1.01143 1.39147 1.31834 0.85029 0.79892 0.74959 0.78923 1.18503 1.18803 1.17503 1.21302 1.04262 0.95458 1.06720 1.20478 0.93382 0.94158 0.94341 0.86857 0.93015 0.93674 0.74378 0.93363 0.92747 0.89078 0.91823 0.89069 0.90264 0.91587 0.89061 0.87134 0.87314 0.89083 0.86853 0.85475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.10 10.70 127.77 1.37 2.47 16 2 N -0.72 -11.02 5.61 -484.52 -2.72 -13.74 16 3 C 0.52 12.47 7.15 87.65 0.63 13.09 16 4 O -0.58 -19.58 15.92 -3.04 -0.05 -19.63 16 5 C -0.12 -2.72 2.93 -11.54 -0.03 -2.75 16 6 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 7 C -0.14 -3.26 7.52 71.98 0.54 -2.71 16 8 C 0.14 4.11 4.34 86.38 0.37 4.48 16 9 N -1.00 -29.47 2.91 -539.11 -1.57 -31.04 16 10 C 0.08 1.90 10.33 127.77 1.32 3.22 16 11 S 2.72 102.51 4.81 -56.49 -0.27 102.24 16 12 O -0.99 -39.80 16.33 -128.00 -2.09 -41.89 16 13 O -0.98 -39.41 12.66 -128.00 -1.62 -41.03 16 14 C -0.80 -36.38 6.00 22.46 0.13 -36.25 16 15 C -0.02 -1.05 9.49 22.22 0.21 -0.84 16 16 C -0.21 -11.19 8.70 22.73 0.20 -10.99 16 17 C 0.11 5.88 5.58 -21.29 -0.12 5.76 16 18 C -0.47 -23.87 9.05 23.46 0.21 -23.65 16 19 H 0.09 4.47 7.91 -2.91 -0.02 4.45 16 20 C 0.03 1.56 5.14 85.25 0.44 2.00 16 21 N -0.80 -39.76 10.95 21.82 0.24 -39.52 16 22 Si 0.99 35.52 29.60 68.60 2.03 37.55 16 23 H -0.26 -9.14 7.11 99.48 0.71 -8.44 16 24 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 25 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 26 C -0.26 -12.60 9.80 22.73 0.22 -12.38 16 27 C 0.00 -0.18 9.49 22.22 0.21 0.03 16 28 H 0.11 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.04 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.42 3.40 8.25 -92.71 -0.76 2.64 16 32 H 0.05 1.27 5.78 -2.39 -0.01 1.26 16 33 H 0.05 1.57 7.45 -2.38 -0.02 1.55 16 34 H 0.09 1.36 7.56 -2.38 -0.02 1.34 16 35 H 0.06 2.19 7.61 -2.39 -0.02 2.17 16 36 H 0.09 2.51 7.78 -2.39 -0.02 2.49 16 37 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.07 1.60 7.79 -2.39 -0.02 1.58 16 39 H 0.09 1.68 7.94 -2.39 -0.02 1.66 16 40 H 0.11 5.11 7.59 -2.91 -0.02 5.08 16 41 H 0.11 5.98 6.16 -2.91 -0.02 5.96 16 42 H 0.30 13.26 8.30 -92.71 -0.77 12.49 16 43 H 0.11 5.06 8.06 -2.91 -0.02 5.04 16 44 H 0.13 5.03 7.60 -2.91 -0.02 5.00 16 Total: -1.00 -71.93 372.79 -0.08 -72.01 By element: Atomic # 1 Polarization: 33.33 SS G_CDS: 0.26 Total: 33.58 kcal Atomic # 6 Polarization: -64.24 SS G_CDS: 5.71 Total: -58.53 kcal Atomic # 7 Polarization: -80.26 SS G_CDS: -4.04 Total: -84.30 kcal Atomic # 8 Polarization: -98.79 SS G_CDS: -3.76 Total: -102.55 kcal Atomic # 14 Polarization: 35.52 SS G_CDS: 2.03 Total: 37.55 kcal Atomic # 16 Polarization: 102.51 SS G_CDS: -0.27 Total: 102.24 kcal Total: -71.93 -0.08 -72.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000224004991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.728 kcal (2) G-P(sol) polarization free energy of solvation -71.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.738 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds