Wall clock time and date at job start Sat Apr 11 2020 05:57:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 N 1.46496 * 109.47183 * 120.00295 * 2 1 3 5 5 C 1.34776 * 120.00202 * 155.00091 * 4 2 1 6 6 O 1.21278 * 120.00014 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00223 * 179.97438 * 5 4 2 8 8 H 1.09004 * 109.47488 * 300.00350 * 7 5 4 9 9 C 1.53005 * 109.46738 * 59.99694 * 7 5 4 10 10 N 1.46498 * 109.47347 * 179.97438 * 7 5 4 11 11 S 1.65598 * 119.99739 * 144.99966 * 10 7 5 12 12 O 1.42106 * 106.40221 * 178.54207 * 11 10 7 13 13 O 1.42107 * 106.40625 * 311.46552 * 11 10 7 14 14 C 1.76203 * 107.21734 * 65.00691 * 11 10 7 15 15 C 1.38638 * 119.74478 * 269.72575 * 14 11 10 16 16 C 1.37622 * 120.24373 * 179.72036 * 15 14 11 17 17 C 1.40714 * 119.74582 * 0.57266 * 16 15 14 18 18 C 1.41394 * 120.24669 * 179.68426 * 17 16 15 19 19 H 1.07995 * 120.00140 * 24.40051 * 18 17 16 20 20 C 1.39948 * 119.99977 * 204.41242 * 18 17 16 21 21 N 1.30818 * 120.00248 * 17.85041 * 20 18 17 22 22 Si 1.86797 * 120.00065 * 197.85189 * 20 18 17 23 23 H 1.48507 * 109.47173 * 59.99631 * 22 20 18 24 24 H 1.48499 * 109.47423 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46997 * 299.99958 * 22 20 18 26 26 C 1.40719 * 119.51016 * 359.70120 * 17 16 15 27 27 C 1.37620 * 119.74737 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.46907 * 300.00168 * 1 2 3 29 29 H 1.09003 * 109.46926 * 59.99945 * 1 2 3 30 30 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47274 * 240.00220 * 2 1 3 32 32 H 1.09001 * 109.47200 * 60.00011 * 3 2 1 33 33 H 1.08999 * 109.47638 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47269 * 300.00407 * 3 2 1 35 35 H 0.97001 * 119.99901 * 334.99720 * 4 2 1 36 36 H 1.09003 * 109.46637 * 60.00665 * 9 7 5 37 37 H 1.08999 * 109.47063 * 179.97438 * 9 7 5 38 38 H 1.08994 * 109.47632 * 300.00270 * 9 7 5 39 39 H 0.97001 * 120.00306 * 325.00876 * 10 7 5 40 40 H 1.07997 * 119.88006 * 359.97438 * 15 14 11 41 41 H 1.08005 * 120.12831 * 180.27733 * 16 15 14 42 42 H 0.97003 * 120.00567 * 180.02562 * 21 20 18 43 43 H 1.08005 * 120.12757 * 179.97438 * 26 17 16 44 44 H 1.07992 * 119.87369 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9358 -1.1986 0.2026 7 6 3.7429 -1.9692 2.4249 8 1 3.7796 -1.2685 3.2592 9 6 2.7988 -3.1229 2.7693 10 7 5.0855 -2.4969 2.1702 11 16 6.2073 -2.5289 3.3879 12 8 7.3777 -3.1199 2.8400 13 8 6.1933 -1.2374 3.9806 14 6 5.6137 -3.6458 4.6147 15 6 4.8162 -3.1742 5.6461 16 6 4.3422 -4.0384 6.6065 17 6 4.6798 -5.4031 6.5455 18 6 4.2041 -6.2992 7.5304 19 1 3.3044 -6.0682 8.0813 20 6 4.8993 -7.4854 7.7915 21 7 6.1418 -7.6144 7.4030 22 14 4.0532 -8.8844 8.6948 23 1 2.8660 -9.3274 7.9204 24 1 4.9980 -10.0202 8.8444 25 1 3.6225 -8.4180 10.0373 26 6 5.4946 -5.8694 5.4973 27 6 5.9526 -4.9882 4.5446 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.4622 -0.7387 1.9894 36 1 2.7621 -3.8236 1.9351 37 1 3.1625 -3.6368 3.6591 38 1 1.7996 -2.7307 2.9587 39 1 5.3176 -2.8274 1.2882 40 1 4.5626 -2.1255 5.6937 41 1 3.7174 -3.6698 7.4066 42 1 6.6236 -8.4367 7.5836 43 1 5.7602 -6.9148 5.4410 44 1 6.5784 -5.3437 3.7395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229163990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:36 Heat of formation + Delta-G solvation = -112.260372 kcal Electronic energy + Delta-G solvation = -27643.639126 eV Core-core repulsion = 23686.895574 eV Total energy + Delta-G solvation = -3956.743552 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.09691 -37.63598 -36.60870 -36.33626 -35.15413 -35.11819 -34.06990 -31.88707 -30.30131 -29.56308 -29.24458 -27.50959 -25.85443 -24.47559 -21.58999 -21.48980 -21.19505 -20.48247 -19.08160 -17.82767 -17.60465 -17.04225 -16.54147 -16.15040 -15.59509 -15.38244 -15.10040 -14.54645 -14.40186 -14.14987 -13.81836 -13.48500 -13.23803 -13.23154 -12.86728 -12.67427 -12.54699 -12.44678 -12.30643 -12.20322 -11.79754 -11.70357 -11.61368 -11.46737 -11.43863 -11.34619 -11.30285 -11.24063 -11.22099 -10.88955 -10.48002 -9.96726 -9.78857 -9.67338 -9.50056 -9.29467 -9.12478 -7.99353 -7.73686 -7.16940 -4.83571 1.20043 2.22618 2.54686 2.85194 2.86741 2.88849 2.91657 2.98236 3.62885 3.69125 4.21293 4.46626 4.52873 4.67568 4.76158 4.95598 5.01695 5.06512 5.17309 5.27389 5.34071 5.40119 5.48510 5.50779 5.63107 5.79656 5.82261 6.00110 6.01360 6.06139 6.13293 6.32674 6.34718 6.65231 6.67805 6.88957 7.00586 7.23568 7.30265 7.36991 7.41566 7.61082 7.73217 7.93271 8.09893 8.28785 8.47762 8.61439 9.74389 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.002938 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.099171 B = 9528.861973 C =10612.489587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.135 3.865 3 C -0.165 4.165 4 N -0.727 5.727 5 C 0.517 3.483 6 O -0.532 6.532 7 C 0.139 3.861 8 H 0.115 0.885 9 C -0.173 4.173 10 N -1.108 6.108 11 S 2.693 3.307 12 O -0.979 6.979 13 O -0.986 6.986 14 C -0.787 4.787 15 C 0.000 4.000 16 C -0.237 4.237 17 C 0.140 3.860 18 C -0.435 4.435 19 H 0.087 0.913 20 C 0.072 3.928 21 N -0.763 5.763 22 Si 0.917 3.083 23 H -0.259 1.259 24 H -0.274 1.274 25 H -0.261 1.261 26 C -0.184 4.184 27 C -0.012 4.012 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.062 0.938 31 H 0.087 0.913 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.402 0.598 36 H 0.066 0.934 37 H 0.092 0.908 38 H 0.067 0.933 39 H 0.418 0.582 40 H 0.103 0.897 41 H 0.100 0.900 42 H 0.290 0.710 43 H 0.122 0.878 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.872 7.774 -8.513 16.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.031 3.969 3 C -0.224 4.224 4 N -0.380 5.380 5 C 0.302 3.698 6 O -0.407 6.407 7 C 0.027 3.973 8 H 0.133 0.867 9 C -0.232 4.232 10 N -0.865 5.865 11 S 2.792 3.208 12 O -0.969 6.969 13 O -0.976 6.976 14 C -0.883 4.883 15 C -0.020 4.020 16 C -0.258 4.258 17 C 0.136 3.864 18 C -0.462 4.462 19 H 0.105 0.895 20 C -0.151 4.151 21 N -0.385 5.385 22 Si 0.740 3.260 23 H -0.184 1.184 24 H -0.199 1.199 25 H -0.186 1.186 26 C -0.204 4.204 27 C -0.032 4.032 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.237 0.763 36 H 0.085 0.915 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.253 0.747 40 H 0.121 0.879 41 H 0.118 0.882 42 H 0.102 0.898 43 H 0.140 0.860 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.377 8.257 -9.099 16.083 hybrid contribution -0.891 -1.298 0.807 1.769 sum -11.268 6.958 -8.292 15.625 Atomic orbital electron populations 1.22077 0.94085 1.02715 1.02918 1.20936 0.93940 0.93075 0.88950 1.22201 1.02367 0.95765 1.02028 1.46101 1.17928 1.57058 1.16960 1.20835 0.81159 0.78014 0.89833 1.90674 1.55922 1.59281 1.34836 1.20525 0.84381 0.96353 0.96065 0.86719 1.22379 0.98274 0.98037 1.04514 1.55638 1.24105 1.78947 1.27782 1.01258 0.72544 0.74024 0.72956 1.93508 1.45199 1.79084 1.79153 1.93478 1.86609 1.39980 1.77526 1.29103 1.28430 1.10358 1.20421 1.20137 0.92450 0.97207 0.92235 1.21001 1.09463 0.93588 1.01719 1.17837 0.87439 0.91045 0.90046 1.19913 1.08788 1.01480 1.16027 0.89473 1.26145 0.94224 0.99756 0.94963 1.69811 1.08316 1.27060 1.33318 0.86197 0.80188 0.79217 0.80353 1.18370 1.19900 1.18555 1.21343 1.04305 0.99344 0.95445 1.20247 0.94594 0.91251 0.97114 0.91953 0.91016 0.91867 0.89457 0.92365 0.91931 0.91738 0.76342 0.91537 0.88928 0.91457 0.74721 0.87890 0.88211 0.89820 0.86036 0.87857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.90 9.38 37.16 0.35 -0.55 16 2 C 0.14 1.14 3.18 -67.94 -0.22 0.93 16 3 C -0.17 -1.39 9.48 37.16 0.35 -1.03 16 4 N -0.73 -6.77 4.97 -53.81 -0.27 -7.03 16 5 C 0.52 6.73 7.18 -10.98 -0.08 6.66 16 6 O -0.53 -8.71 15.65 5.56 0.09 -8.62 16 7 C 0.14 1.84 3.32 -69.08 -0.23 1.62 16 8 H 0.12 1.45 7.50 -51.93 -0.39 1.06 16 9 C -0.17 -2.03 9.41 37.16 0.35 -1.68 16 10 N -1.11 -17.55 5.26 -5.88 -0.03 -17.58 16 11 S 2.69 52.37 5.71 -107.50 -0.61 51.76 16 12 O -0.98 -21.67 17.26 -57.17 -0.99 -22.66 16 13 O -0.99 -20.86 16.59 -57.17 -0.95 -21.81 16 14 C -0.79 -16.51 5.08 -39.29 -0.20 -16.71 16 15 C 0.00 0.00 8.57 -39.66 -0.34 -0.34 16 16 C -0.24 -5.23 9.80 -38.87 -0.38 -5.61 16 17 C 0.14 3.38 5.58 -106.82 -0.60 2.79 16 18 C -0.43 -10.25 9.05 -37.74 -0.34 -10.59 16 19 H 0.09 1.92 7.91 -52.49 -0.42 1.51 16 20 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 21 N -0.76 -17.96 10.95 55.55 0.61 -17.35 16 22 Si 0.92 16.57 29.59 -169.99 -5.03 11.54 16 23 H -0.26 -4.64 7.11 56.52 0.40 -4.24 16 24 H -0.27 -4.86 7.11 56.52 0.40 -4.46 16 25 H -0.26 -4.66 7.11 56.52 0.40 -4.26 16 26 C -0.18 -4.44 8.70 -38.87 -0.34 -4.78 16 27 C -0.01 -0.26 9.49 -39.66 -0.38 -0.64 16 28 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 0.88 7.58 -51.93 -0.39 0.49 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.40 2.68 8.02 -40.82 -0.33 2.35 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 1.31 6.18 -51.93 -0.32 0.99 16 38 H 0.07 0.58 7.56 -51.93 -0.39 0.18 16 39 H 0.42 6.33 8.21 -34.47 -0.28 6.04 16 40 H 0.10 1.88 7.59 -52.49 -0.40 1.48 16 41 H 0.10 2.02 8.06 -52.48 -0.42 1.60 16 42 H 0.29 6.16 8.30 -40.82 -0.34 5.83 16 43 H 0.12 3.00 6.16 -52.48 -0.32 2.67 16 44 H 0.10 2.19 7.60 -52.49 -0.40 1.80 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -31.33 378.34 -9.78 -41.11 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: -6.16 Total: 13.39 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: -2.14 Total: -28.44 kcal Atomic # 7 Polarization: -42.28 SS G_CDS: 0.31 Total: -41.97 kcal Atomic # 8 Polarization: -51.24 SS G_CDS: -1.85 Total: -53.09 kcal Atomic # 14 Polarization: 16.57 SS G_CDS: -5.03 Total: 11.54 kcal Atomic # 16 Polarization: 52.37 SS G_CDS: -0.61 Total: 51.76 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.33 -9.78 -41.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229163990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.154 kcal (2) G-P(sol) polarization free energy of solvation -31.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.106 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.260 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds