Wall clock time and date at job start Sat Apr 11 2020 05:57:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52998 * 109.47456 * 2 1 4 4 N 1.46496 * 109.47183 * 120.00295 * 2 1 3 5 5 C 1.34776 * 120.00202 * 155.00091 * 4 2 1 6 6 O 1.21278 * 120.00014 * 0.02562 * 5 4 2 7 7 C 1.50701 * 120.00223 * 179.97438 * 5 4 2 8 8 H 1.09004 * 109.47488 * 300.00350 * 7 5 4 9 9 C 1.53005 * 109.46738 * 59.99694 * 7 5 4 10 10 N 1.46498 * 109.47347 * 179.97438 * 7 5 4 11 11 S 1.65598 * 119.99739 * 144.99966 * 10 7 5 12 12 O 1.42106 * 106.40221 * 178.54207 * 11 10 7 13 13 O 1.42107 * 106.40625 * 311.46552 * 11 10 7 14 14 C 1.76203 * 107.21734 * 65.00691 * 11 10 7 15 15 C 1.38638 * 119.74478 * 269.72575 * 14 11 10 16 16 C 1.37622 * 120.24373 * 179.72036 * 15 14 11 17 17 C 1.40714 * 119.74582 * 0.57266 * 16 15 14 18 18 C 1.41394 * 120.24669 * 179.68426 * 17 16 15 19 19 H 1.07995 * 120.00140 * 24.40051 * 18 17 16 20 20 C 1.39948 * 119.99977 * 204.41242 * 18 17 16 21 21 N 1.30818 * 120.00248 * 17.85041 * 20 18 17 22 22 Si 1.86797 * 120.00065 * 197.85189 * 20 18 17 23 23 H 1.48507 * 109.47173 * 59.99631 * 22 20 18 24 24 H 1.48499 * 109.47423 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.46997 * 299.99958 * 22 20 18 26 26 C 1.40719 * 119.51016 * 359.70120 * 17 16 15 27 27 C 1.37620 * 119.74737 * 0.02562 * 26 17 16 28 28 H 1.09001 * 109.46907 * 300.00168 * 1 2 3 29 29 H 1.09003 * 109.46926 * 59.99945 * 1 2 3 30 30 H 1.09002 * 109.47030 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47274 * 240.00220 * 2 1 3 32 32 H 1.09001 * 109.47200 * 60.00011 * 3 2 1 33 33 H 1.08999 * 109.47638 * 179.97438 * 3 2 1 34 34 H 1.08999 * 109.47269 * 300.00407 * 3 2 1 35 35 H 0.97001 * 119.99901 * 334.99720 * 4 2 1 36 36 H 1.09003 * 109.46637 * 60.00665 * 9 7 5 37 37 H 1.08999 * 109.47063 * 179.97438 * 9 7 5 38 38 H 1.08994 * 109.47632 * 300.00270 * 9 7 5 39 39 H 0.97001 * 120.00306 * 325.00876 * 10 7 5 40 40 H 1.07997 * 119.88006 * 359.97438 * 15 14 11 41 41 H 1.08005 * 120.12831 * 180.27733 * 16 15 14 42 42 H 0.97003 * 120.00567 * 180.02562 * 21 20 18 43 43 H 1.08005 * 120.12757 * 179.97438 * 26 17 16 44 44 H 1.07992 * 119.87369 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1961 5 6 3.2403 -1.2592 1.1943 6 8 3.9358 -1.1986 0.2026 7 6 3.7429 -1.9692 2.4249 8 1 3.7796 -1.2685 3.2592 9 6 2.7988 -3.1229 2.7693 10 7 5.0855 -2.4969 2.1702 11 16 6.2073 -2.5289 3.3879 12 8 7.3777 -3.1199 2.8400 13 8 6.1933 -1.2374 3.9806 14 6 5.6137 -3.6458 4.6147 15 6 4.8162 -3.1742 5.6461 16 6 4.3422 -4.0384 6.6065 17 6 4.6798 -5.4031 6.5455 18 6 4.2041 -6.2992 7.5304 19 1 3.3044 -6.0682 8.0813 20 6 4.8993 -7.4854 7.7915 21 7 6.1418 -7.6144 7.4030 22 14 4.0532 -8.8844 8.6948 23 1 2.8660 -9.3274 7.9204 24 1 4.9980 -10.0202 8.8444 25 1 3.6225 -8.4180 10.0373 26 6 5.4946 -5.8694 5.4973 27 6 5.9526 -4.9882 4.5446 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6767 1.9563 0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.4622 -0.7387 1.9894 36 1 2.7621 -3.8236 1.9351 37 1 3.1625 -3.6368 3.6591 38 1 1.7996 -2.7307 2.9587 39 1 5.3176 -2.8274 1.2882 40 1 4.5626 -2.1255 5.6937 41 1 3.7174 -3.6698 7.4066 42 1 6.6236 -8.4367 7.5836 43 1 5.7602 -6.9148 5.4410 44 1 6.5784 -5.3437 3.7395 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229163990.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:35 Heat of formation + Delta-G solvation = -134.739838 kcal Electronic energy + Delta-G solvation = -27644.613908 eV Core-core repulsion = 23686.895574 eV Total energy + Delta-G solvation = -3957.718335 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.09632 -39.36759 -38.21282 -37.27526 -36.82339 -36.30857 -35.76696 -32.76736 -32.04352 -31.27180 -30.34730 -28.06517 -27.59359 -25.46539 -23.25676 -22.94941 -22.32692 -21.43354 -20.52561 -19.41084 -19.09616 -18.51406 -17.74094 -17.42132 -17.12529 -16.62972 -16.26225 -15.83277 -15.71491 -15.19274 -15.14725 -14.92763 -14.81216 -14.15631 -14.10832 -13.95443 -13.76382 -13.61328 -13.39697 -13.17396 -13.12415 -13.06947 -13.04100 -12.96322 -12.87897 -12.77304 -12.59883 -12.50917 -12.26306 -12.02037 -11.88089 -11.50962 -11.37398 -11.18629 -10.99660 -10.46438 -10.12549 -9.74942 -9.49570 -8.84774 -6.61663 -0.37826 0.51362 1.11048 1.37595 1.45939 1.51746 1.53061 2.02325 2.12725 2.29968 2.56042 2.91949 3.54004 3.57229 3.61772 3.96385 3.99556 4.07184 4.19633 4.32913 4.35572 4.38455 4.42531 4.76116 4.78605 4.82920 4.92742 4.96048 4.97296 5.00845 5.06655 5.14994 5.26991 5.30156 5.35821 5.36723 5.54968 5.56320 5.63634 5.80825 5.96217 6.03659 6.18833 6.52457 6.53102 6.71837 6.85091 7.18801 8.09755 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.016274 B = 0.002938 C = 0.002638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1720.099171 B = 9528.861973 C =10612.489587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.131 3.869 3 C -0.163 4.163 4 N -0.709 5.709 5 C 0.518 3.482 6 O -0.571 6.571 7 C 0.131 3.869 8 H 0.126 0.874 9 C -0.169 4.169 10 N -1.101 6.101 11 S 2.722 3.278 12 O -1.007 7.007 13 O -0.999 6.999 14 C -0.788 4.788 15 C 0.004 3.996 16 C -0.247 4.247 17 C 0.115 3.885 18 C -0.463 4.463 19 H 0.096 0.904 20 C 0.033 3.967 21 N -0.800 5.800 22 Si 0.990 3.010 23 H -0.255 1.255 24 H -0.270 1.270 25 H -0.254 1.254 26 C -0.207 4.207 27 C -0.018 4.018 28 H 0.076 0.924 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.031 0.969 34 H 0.080 0.920 35 H 0.417 0.583 36 H 0.065 0.935 37 H 0.070 0.930 38 H 0.104 0.896 39 H 0.422 0.578 40 H 0.131 0.869 41 H 0.116 0.884 42 H 0.297 0.703 43 H 0.107 0.893 44 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.387 8.623 -8.248 18.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.027 3.973 3 C -0.221 4.221 4 N -0.363 5.363 5 C 0.302 3.698 6 O -0.450 6.450 7 C 0.020 3.980 8 H 0.143 0.857 9 C -0.228 4.228 10 N -0.861 5.861 11 S 2.819 3.181 12 O -0.998 6.998 13 O -0.989 6.989 14 C -0.882 4.882 15 C -0.015 4.015 16 C -0.268 4.268 17 C 0.111 3.889 18 C -0.490 4.490 19 H 0.114 0.886 20 C -0.186 4.186 21 N -0.423 5.423 22 Si 0.810 3.190 23 H -0.179 1.179 24 H -0.194 1.194 25 H -0.178 1.178 26 C -0.228 4.228 27 C -0.038 4.038 28 H 0.095 0.905 29 H 0.102 0.898 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.099 0.901 35 H 0.255 0.745 36 H 0.084 0.916 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.258 0.742 40 H 0.148 0.852 41 H 0.134 0.866 42 H 0.108 0.892 43 H 0.125 0.875 44 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -12.937 9.118 -8.806 18.112 hybrid contribution -0.126 -1.424 0.616 1.557 sum -13.063 7.694 -8.190 17.231 Atomic orbital electron populations 1.22027 0.91318 1.03323 1.04258 1.21077 0.95979 0.92612 0.87658 1.22180 1.00359 0.96040 1.03500 1.46017 1.16696 1.55569 1.17980 1.20739 0.81954 0.78082 0.88993 1.90665 1.57282 1.61020 1.36049 1.20824 0.83202 0.97255 0.96760 0.85688 1.22353 0.99696 0.97361 1.03355 1.55276 1.24969 1.78956 1.26857 1.00338 0.72089 0.73081 0.72630 1.93466 1.47259 1.79511 1.79556 1.93456 1.86925 1.40332 1.78212 1.29370 1.27675 1.09883 1.21294 1.20418 0.91460 0.98352 0.91309 1.21229 1.09912 0.93035 1.02603 1.18177 0.87948 0.92340 0.90433 1.20231 1.09511 1.02640 1.16625 0.88611 1.27032 0.94444 1.01758 0.95378 1.69866 1.09752 1.28078 1.34584 0.85109 0.78978 0.75824 0.79127 1.17901 1.19391 1.17797 1.21331 1.05806 0.99063 0.96579 1.20380 0.94551 0.91993 0.96925 0.90507 0.89802 0.91625 0.91436 0.91146 0.94958 0.90087 0.74488 0.91571 0.91136 0.87726 0.74155 0.85165 0.86597 0.89178 0.87502 0.87433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.38 71.98 0.68 -0.55 16 2 C 0.13 1.96 3.18 44.99 0.14 2.10 16 3 C -0.16 -2.46 9.48 71.98 0.68 -1.77 16 4 N -0.71 -11.61 4.97 -442.55 -2.20 -13.81 16 5 C 0.52 12.80 7.18 87.66 0.63 13.43 16 6 O -0.57 -18.58 15.65 -3.02 -0.05 -18.63 16 7 C 0.13 3.27 3.32 44.25 0.15 3.41 16 8 H 0.13 2.87 7.50 -2.39 -0.02 2.86 16 9 C -0.17 -3.64 9.41 71.98 0.68 -2.96 16 10 N -1.10 -34.17 5.26 -172.51 -0.91 -35.07 16 11 S 2.72 104.49 5.71 -56.49 -0.32 104.17 16 12 O -1.01 -44.75 17.26 -128.00 -2.21 -46.96 16 13 O -1.00 -41.07 16.59 -128.00 -2.12 -43.19 16 14 C -0.79 -32.86 5.08 22.46 0.11 -32.74 16 15 C 0.00 0.18 8.57 22.22 0.19 0.37 16 16 C -0.25 -10.81 9.80 22.73 0.22 -10.59 16 17 C 0.11 5.62 5.58 -21.29 -0.12 5.50 16 18 C -0.46 -22.07 9.05 23.46 0.21 -21.85 16 19 H 0.10 4.22 7.91 -2.91 -0.02 4.20 16 20 C 0.03 1.50 5.14 85.26 0.44 1.94 16 21 N -0.80 -38.56 10.95 21.83 0.24 -38.32 16 22 Si 0.99 33.61 29.59 68.60 2.03 35.64 16 23 H -0.26 -8.40 7.11 99.48 0.71 -7.69 16 24 H -0.27 -8.83 7.11 99.48 0.71 -8.12 16 25 H -0.25 -8.27 7.11 99.48 0.71 -7.57 16 26 C -0.21 -10.33 8.70 22.73 0.20 -10.14 16 27 C -0.02 -0.84 9.49 22.22 0.21 -0.63 16 28 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.07 1.31 7.58 -2.39 -0.02 1.29 16 32 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.42 4.16 8.02 -92.71 -0.74 3.42 16 36 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.89 6.18 -2.39 -0.01 1.88 16 38 H 0.10 1.44 7.56 -2.39 -0.02 1.42 16 39 H 0.42 12.71 8.21 -96.75 -0.79 11.92 16 40 H 0.13 4.46 7.59 -2.91 -0.02 4.44 16 41 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 42 H 0.30 12.88 8.30 -92.71 -0.77 12.11 16 43 H 0.11 5.54 6.16 -2.91 -0.02 5.52 16 44 H 0.11 4.72 7.60 -2.91 -0.02 4.69 16 Total: -1.00 -68.86 378.34 -1.62 -70.47 By element: Atomic # 1 Polarization: 40.69 SS G_CDS: -0.50 Total: 40.19 kcal Atomic # 6 Polarization: -58.90 SS G_CDS: 4.42 Total: -54.48 kcal Atomic # 7 Polarization: -84.34 SS G_CDS: -2.87 Total: -87.21 kcal Atomic # 8 Polarization: -104.40 SS G_CDS: -4.38 Total: -108.78 kcal Atomic # 14 Polarization: 33.61 SS G_CDS: 2.03 Total: 35.64 kcal Atomic # 16 Polarization: 104.49 SS G_CDS: -0.32 Total: 104.17 kcal Total: -68.86 -1.62 -70.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229163990.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.267 kcal (2) G-P(sol) polarization free energy of solvation -68.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds