Wall clock time and date at job start Sat Apr 11 2020 05:57:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.46850 * 2 1 4 4 N 1.46496 * 109.46947 * 119.99732 * 2 1 3 5 5 C 1.34776 * 120.00135 * 85.00412 * 4 2 1 6 6 O 1.21287 * 119.99800 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00105 * 180.02562 * 5 4 2 8 8 H 1.09005 * 109.47349 * 60.00317 * 7 5 4 9 9 C 1.52995 * 109.47193 * 299.99851 * 7 5 4 10 10 N 1.46505 * 109.46977 * 179.97438 * 7 5 4 11 11 S 1.65598 * 119.99934 * 214.99877 * 10 7 5 12 12 O 1.42107 * 106.40094 * 311.46057 * 11 10 7 13 13 O 1.42102 * 106.40399 * 178.54158 * 11 10 7 14 14 C 1.76201 * 107.21899 * 65.00213 * 11 10 7 15 15 C 1.38629 * 119.74946 * 90.00185 * 14 11 10 16 16 C 1.37624 * 120.24653 * 180.27661 * 15 14 11 17 17 C 1.40716 * 119.74224 * 359.52057 * 16 15 14 18 18 C 1.41396 * 120.23809 * 180.23246 * 17 16 15 19 19 H 1.08004 * 119.99614 * 155.44655 * 18 17 16 20 20 C 1.39940 * 120.00247 * 335.43838 * 18 17 16 21 21 N 1.30823 * 120.00151 * 342.11422 * 20 18 17 22 22 Si 1.86806 * 119.99767 * 162.10433 * 20 18 17 23 23 H 1.48496 * 109.46866 * 94.67188 * 22 20 18 24 24 H 1.48498 * 109.46883 * 214.66477 * 22 20 18 25 25 H 1.48493 * 109.47470 * 334.66957 * 22 20 18 26 26 C 1.40712 * 119.51327 * 0.46996 * 17 16 15 27 27 C 1.37612 * 119.74657 * 359.76314 * 26 17 16 28 28 H 1.08998 * 109.47014 * 60.00459 * 1 2 3 29 29 H 1.09003 * 109.46959 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.47410 * 300.00142 * 1 2 3 31 31 H 1.08994 * 109.46891 * 239.99918 * 2 1 3 32 32 H 1.09003 * 109.46998 * 180.02562 * 3 2 1 33 33 H 1.09006 * 109.47265 * 299.99537 * 3 2 1 34 34 H 1.09005 * 109.47274 * 59.99798 * 3 2 1 35 35 H 0.97003 * 120.00289 * 265.00149 * 4 2 1 36 36 H 1.08994 * 109.47306 * 180.02562 * 9 7 5 37 37 H 1.09002 * 109.47256 * 299.99941 * 9 7 5 38 38 H 1.08997 * 109.47152 * 59.99678 * 9 7 5 39 39 H 0.96995 * 119.99977 * 34.99987 * 10 7 5 40 40 H 1.07999 * 119.87639 * 359.97438 * 15 14 11 41 41 H 1.07997 * 120.12681 * 179.71511 * 16 15 14 42 42 H 0.97002 * 120.00064 * 180.02562 * 21 20 18 43 43 H 1.08001 * 120.12762 * 179.73183 * 26 17 16 44 44 H 1.08003 * 119.88187 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1471 -2.0321 1.1945 6 8 1.8583 -2.6678 0.2027 7 6 2.6488 -2.7425 2.4251 8 1 1.9758 -2.5437 3.2592 9 6 4.0512 -2.2371 2.7697 10 7 2.6977 -4.1845 2.1708 11 16 2.3537 -5.2523 3.3889 12 8 3.1134 -4.8347 4.5150 13 8 2.4528 -6.5520 2.8232 14 6 0.6602 -5.0247 3.8192 15 6 -0.3190 -5.7628 3.1725 16 6 -1.6452 -5.5892 3.4965 17 6 -2.0048 -4.6656 4.4953 18 6 -3.3638 -4.4824 4.8399 19 1 -3.6271 -4.1092 5.8187 20 6 -4.3676 -4.7844 3.9129 21 7 -4.0734 -4.8952 2.6430 22 14 -6.1277 -5.0297 4.4888 23 1 -6.8738 -3.7525 4.3579 24 1 -6.7803 -6.0717 3.6559 25 1 -6.1281 -5.4599 5.9100 26 6 -1.0023 -3.9220 5.1451 27 6 0.3171 -4.1086 4.8016 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8933 -0.5138 -0.8899 32 1 3.1300 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8901 34 1 1.6766 1.9564 0.8900 35 1 2.2490 -0.1822 1.9895 36 1 4.4143 -2.7512 3.6595 37 1 4.7242 -2.4360 1.9356 38 1 4.0144 -1.1643 2.9590 39 1 2.9316 -4.5138 1.2889 40 1 -0.0404 -6.4732 2.4082 41 1 -2.4068 -6.1619 2.9882 42 1 -4.7693 -5.1042 2.0003 43 1 -1.2674 -3.2073 5.9102 44 1 1.0883 -3.5387 5.2986 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229164003.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:38 Heat of formation + Delta-G solvation = -135.521940 kcal Electronic energy + Delta-G solvation = -28036.572999 eV Core-core repulsion = 24078.820750 eV Total energy + Delta-G solvation = -3957.752249 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.08563 -39.39777 -38.19896 -37.28254 -36.80750 -36.27686 -35.81933 -32.78201 -32.08632 -31.31948 -30.37965 -28.09328 -27.64256 -25.47717 -23.30598 -23.02940 -22.33938 -21.44368 -20.52523 -19.46195 -19.10853 -18.35194 -17.92606 -17.44682 -17.17707 -16.66982 -16.14759 -15.91032 -15.73952 -15.23191 -15.13674 -14.97774 -14.84166 -14.22972 -14.08582 -13.97763 -13.76044 -13.64439 -13.46033 -13.20937 -13.08824 -13.06391 -13.01577 -12.94391 -12.89280 -12.76406 -12.66255 -12.55738 -12.27770 -12.03368 -11.90954 -11.61511 -11.44659 -11.23576 -10.96487 -10.46815 -10.12658 -9.80458 -9.56628 -8.88924 -6.66666 -0.35485 0.46527 1.04342 1.33928 1.40579 1.51472 1.55378 1.99097 2.09493 2.30103 2.51857 2.90882 3.49499 3.57239 3.60924 3.93127 3.97783 4.06957 4.18099 4.27123 4.31495 4.32941 4.40550 4.71782 4.75620 4.83737 4.86044 4.91865 4.95203 4.99445 5.04962 5.10044 5.21903 5.27952 5.31410 5.33774 5.50716 5.54785 5.57777 5.74197 5.91224 6.01742 6.13142 6.47701 6.53488 6.66449 6.79840 7.21197 8.05958 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.009438 B = 0.004210 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.922941 B = 6648.500128 C = 8716.063548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.134 3.866 3 C -0.149 4.149 4 N -0.710 5.710 5 C 0.511 3.489 6 O -0.571 6.571 7 C 0.130 3.870 8 H 0.115 0.885 9 C -0.162 4.162 10 N -1.101 6.101 11 S 2.727 3.273 12 O -0.982 6.982 13 O -1.006 7.006 14 C -0.800 4.800 15 C -0.024 4.024 16 C -0.209 4.209 17 C 0.112 3.888 18 C -0.465 4.465 19 H 0.096 0.904 20 C 0.034 3.966 21 N -0.799 5.799 22 Si 0.990 3.010 23 H -0.256 1.256 24 H -0.266 1.266 25 H -0.253 1.253 26 C -0.252 4.252 27 C -0.002 4.002 28 H 0.080 0.920 29 H 0.022 0.978 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.082 0.918 34 H 0.075 0.925 35 H 0.417 0.583 36 H 0.078 0.922 37 H 0.070 0.930 38 H 0.106 0.894 39 H 0.422 0.578 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.297 0.703 43 H 0.118 0.882 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.767 13.727 -2.549 16.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.030 3.970 3 C -0.206 4.206 4 N -0.363 5.363 5 C 0.296 3.704 6 O -0.450 6.450 7 C 0.019 3.981 8 H 0.133 0.867 9 C -0.221 4.221 10 N -0.860 5.860 11 S 2.822 3.178 12 O -0.972 6.972 13 O -0.997 6.997 14 C -0.893 4.893 15 C -0.044 4.044 16 C -0.230 4.230 17 C 0.108 3.892 18 C -0.491 4.491 19 H 0.114 0.886 20 C -0.186 4.186 21 N -0.422 5.422 22 Si 0.809 3.191 23 H -0.180 1.180 24 H -0.190 1.190 25 H -0.176 1.176 26 C -0.272 4.272 27 C -0.022 4.022 28 H 0.099 0.901 29 H 0.041 0.959 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.094 0.906 35 H 0.255 0.745 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.124 0.876 39 H 0.258 0.742 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.136 0.864 44 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 9.054 12.739 -2.981 15.911 hybrid contribution -1.639 -0.262 -0.306 1.688 sum 7.416 12.477 -3.287 14.882 Atomic orbital electron populations 1.22195 0.96056 1.00753 1.03281 1.21029 0.93567 0.94593 0.87830 1.22012 1.02141 0.92302 1.04191 1.45989 1.66621 1.05847 1.17881 1.20929 0.76809 0.83308 0.89323 1.90683 1.51125 1.66874 1.36323 1.20842 1.01028 0.80167 0.96044 0.86731 1.22318 0.92660 1.03579 1.03566 1.55369 1.86080 1.15799 1.28715 1.00352 0.73541 0.71650 0.72233 1.93475 1.69854 1.82989 1.50928 1.93465 1.87939 1.39111 1.79193 1.29661 1.22058 1.19509 1.18104 1.20421 0.93259 0.95143 0.95535 1.21329 0.94677 1.02797 1.04157 1.18206 0.94052 0.87612 0.89316 1.20259 0.91005 1.36754 1.01121 0.88642 1.27047 1.06790 0.90848 0.93878 1.69876 1.38425 1.30338 1.03528 0.85055 0.74527 0.79526 0.79944 1.18013 1.19036 1.17623 1.21309 0.93065 1.05412 1.07435 1.20533 0.96406 0.92991 0.92222 0.90073 0.95910 0.91558 0.91308 0.90958 0.89908 0.90630 0.74493 0.90255 0.91051 0.87583 0.74211 0.87692 0.87596 0.89173 0.86406 0.84461 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 9.48 71.98 0.68 -2.96 16 2 C 0.13 2.53 3.18 44.99 0.14 2.68 16 3 C -0.15 -1.55 9.38 71.98 0.68 -0.87 16 4 N -0.71 -13.89 4.97 -442.55 -2.20 -16.09 16 5 C 0.51 14.24 7.18 87.66 0.63 14.87 16 6 O -0.57 -21.00 15.65 -3.05 -0.05 -21.05 16 7 C 0.13 3.39 3.18 44.24 0.14 3.53 16 8 H 0.12 2.91 7.21 -2.38 -0.02 2.89 16 9 C -0.16 -2.95 9.41 71.98 0.68 -2.28 16 10 N -1.10 -34.82 5.26 -172.52 -0.91 -35.73 16 11 S 2.73 104.06 5.64 -56.49 -0.32 103.74 16 12 O -0.98 -37.57 16.52 -128.00 -2.11 -39.68 16 13 O -1.01 -44.33 17.26 -128.00 -2.21 -46.54 16 14 C -0.80 -35.53 5.84 22.46 0.13 -35.40 16 15 C -0.02 -1.17 9.49 22.22 0.21 -0.96 16 16 C -0.21 -11.17 8.70 22.73 0.20 -10.97 16 17 C 0.11 5.82 5.57 -21.29 -0.12 5.70 16 18 C -0.46 -23.25 9.05 23.46 0.21 -23.04 16 19 H 0.10 4.44 7.91 -2.91 -0.02 4.42 16 20 C 0.03 1.58 5.14 85.26 0.44 2.02 16 21 N -0.80 -39.71 10.97 21.82 0.24 -39.47 16 22 Si 0.99 34.91 29.60 68.60 2.03 36.94 16 23 H -0.26 -8.54 7.11 99.48 0.71 -7.83 16 24 H -0.27 -9.07 7.11 99.48 0.71 -8.36 16 25 H -0.25 -8.70 7.11 99.48 0.71 -7.99 16 26 C -0.25 -11.70 9.80 22.73 0.22 -11.47 16 27 C 0.00 -0.08 8.86 22.22 0.20 0.12 16 28 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 29 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.07 1.58 7.58 -2.39 -0.02 1.56 16 32 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.08 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 35 H 0.42 5.14 8.02 -92.71 -0.74 4.40 16 36 H 0.08 1.61 7.64 -2.39 -0.02 1.59 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.11 1.12 7.56 -2.39 -0.02 1.10 16 39 H 0.42 13.00 8.21 -96.75 -0.79 12.21 16 40 H 0.11 5.01 7.60 -2.91 -0.02 4.99 16 41 H 0.11 5.85 6.17 -2.91 -0.02 5.83 16 42 H 0.30 13.22 8.30 -92.71 -0.77 12.45 16 43 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 44 H 0.14 4.81 7.60 -2.91 -0.02 4.79 16 Total: -1.00 -71.86 380.31 -1.59 -73.45 By element: Atomic # 1 Polarization: 43.98 SS G_CDS: -0.50 Total: 43.48 kcal Atomic # 6 Polarization: -63.49 SS G_CDS: 4.44 Total: -59.05 kcal Atomic # 7 Polarization: -88.43 SS G_CDS: -2.87 Total: -91.30 kcal Atomic # 8 Polarization: -102.89 SS G_CDS: -4.37 Total: -107.27 kcal Atomic # 14 Polarization: 34.91 SS G_CDS: 2.03 Total: 36.94 kcal Atomic # 16 Polarization: 104.06 SS G_CDS: -0.32 Total: 103.74 kcal Total: -71.86 -1.59 -73.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229164003.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.068 kcal (2) G-P(sol) polarization free energy of solvation -71.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.454 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds