Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47371 * 2 1 4 4 C 1.50693 * 109.47397 * 120.00651 * 2 1 3 5 5 H 1.08001 * 120.00247 * 120.00123 * 4 2 1 6 6 C 1.37878 * 120.00070 * 299.99500 * 4 2 1 7 7 N 1.31509 * 120.00632 * 180.02562 * 6 4 2 8 8 Si 1.86810 * 119.99617 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46784 * 89.99920 * 8 6 4 10 10 H 1.48499 * 109.46770 * 209.99843 * 8 6 4 11 11 H 1.48492 * 109.47127 * 329.99924 * 8 6 4 12 12 N 1.46504 * 109.46639 * 240.00510 * 2 1 3 13 13 C 1.46495 * 120.00281 * 299.99577 * 12 2 1 14 14 C 1.34783 * 119.99921 * 120.00112 * 12 2 1 15 15 O 1.21676 * 120.00098 * 7.89241 * 14 12 2 16 16 C 1.46832 * 119.99935 * 187.89231 * 14 12 2 17 17 C 1.38012 * 126.68381 * 353.20583 * 16 14 12 18 18 N 1.34588 * 108.88048 * 179.97438 * 17 16 14 19 19 H 0.96999 * 124.97980 * 179.97438 * 18 17 16 20 20 N 1.40006 * 110.03009 * 0.02562 * 18 17 16 21 21 C 1.36629 * 108.24742 * 359.73471 * 20 18 17 22 22 N 1.32085 * 122.61331 * 180.26100 * 21 20 18 23 23 C 1.33879 * 121.96815 * 0.17262 * 22 21 20 24 24 O 1.21968 * 120.78409 * 179.97438 * 23 22 21 25 25 C 1.47511 * 118.42558 * 0.02562 * 23 22 21 26 26 C 1.39267 * 121.83438 * 179.97438 * 25 23 22 27 27 C 1.37858 * 119.47971 * 179.09913 * 26 25 23 28 28 C 1.38723 * 120.44269 * 1.27121 * 27 26 25 29 29 C 1.37942 * 120.66351 * 358.98420 * 28 27 26 30 30 C 1.38410 * 131.56948 * 180.02562 * 20 18 17 31 31 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47072 * 299.99563 * 1 2 3 33 33 H 1.08999 * 109.47639 * 59.99233 * 1 2 3 34 34 H 0.97001 * 120.00783 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47705 * 246.73096 * 13 12 2 36 36 H 1.08993 * 109.47419 * 126.72544 * 13 12 2 37 37 H 1.09006 * 109.47111 * 6.72894 * 13 12 2 38 38 H 1.07998 * 125.56012 * 359.93710 * 17 16 14 39 39 H 1.07999 * 120.25329 * 0.02562 * 26 25 23 40 40 H 1.08001 * 119.77140 * 180.25585 * 27 26 25 41 41 H 1.08002 * 119.67187 * 178.99656 * 28 27 26 42 42 H 1.08000 * 120.14927 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5564 8 14 0.6248 1.2789 2.6542 9 1 -0.8027 0.8725 2.6999 10 1 0.9761 1.9949 3.9069 11 1 0.8471 2.1764 1.4922 12 7 2.0182 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0835 15 8 3.2057 1.0794 -1.8241 16 6 3.1392 -0.6672 -3.3630 17 6 2.8604 -1.9640 -3.7443 18 7 3.3378 -2.1649 -4.9865 19 1 3.2693 -2.9966 -5.4808 20 7 3.9489 -0.9975 -5.4600 21 6 3.8469 -0.0385 -4.4922 22 7 4.3280 1.1820 -4.6459 23 6 4.9486 1.5630 -5.7693 24 8 5.3843 2.6959 -5.8883 25 6 5.0919 0.5804 -6.8602 26 6 5.7242 0.9007 -8.0590 27 6 5.8477 -0.0610 -9.0390 28 6 5.3242 -1.3313 -8.8471 29 6 4.6907 -1.6602 -7.6667 30 6 4.5756 -0.7110 -6.6603 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.9036 -0.5281 4.4375 35 1 2.5602 -2.7101 -1.3595 36 1 1.2262 -2.1979 -2.4207 37 1 0.9431 -2.4149 -0.6769 38 1 2.3439 -2.6980 -3.1436 39 1 6.1279 1.8904 -8.2137 40 1 6.3409 0.1811 -9.9688 41 1 5.4138 -2.0703 -9.6296 42 1 4.2866 -2.6518 -7.5260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264125874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = 109.339205 kcal Electronic energy + Delta-G solvation = -29004.950064 eV Core-core repulsion = 24954.664590 eV Total energy + Delta-G solvation = -4050.285473 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.65815 -40.06699 -38.84920 -38.13729 -35.95307 -35.37669 -33.75513 -32.74203 -31.48565 -30.98917 -30.29451 -29.38764 -26.86585 -25.15278 -24.57897 -24.41376 -23.46672 -22.48704 -20.97428 -20.11459 -19.10373 -18.37630 -17.66623 -17.14565 -16.68321 -16.55667 -16.33441 -15.71620 -15.55654 -15.02432 -14.79439 -14.59579 -14.50157 -14.38555 -14.02383 -13.70843 -13.23943 -13.05627 -12.82642 -12.66768 -12.50758 -12.24174 -11.94842 -11.77967 -11.74819 -11.36545 -11.17857 -10.97303 -10.71845 -10.63473 -10.14635 -9.63056 -9.61068 -9.36438 -9.17062 -9.00560 -8.93887 -8.62322 -8.03625 -7.74971 -6.13662 -4.14391 0.21985 0.36908 0.56475 1.03480 1.58860 2.84147 2.85935 3.25450 3.41163 3.44512 3.48444 3.70375 3.88429 3.94548 4.00974 4.09346 4.25269 4.37701 4.50137 4.52172 4.62164 4.71416 4.88889 5.12516 5.12887 5.22773 5.27853 5.35774 5.44095 5.62315 5.66143 5.83005 5.94211 6.02872 6.19632 6.21460 6.24147 6.29777 6.46553 6.75631 6.83267 7.13298 7.33900 7.63991 7.81353 8.15913 8.25603 8.45681 8.86221 8.96018 9.47685 10.98922 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.002843 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.503466 B = 9846.339657 C =10640.071171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.232 3.768 3 H 0.066 0.934 4 C -0.527 4.527 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.895 5.895 8 Si 0.881 3.119 9 H -0.278 1.278 10 H -0.294 1.294 11 H -0.261 1.261 12 N -0.586 5.586 13 C 0.068 3.932 14 C 0.582 3.418 15 O -0.514 6.514 16 C -0.247 4.247 17 C 0.175 3.825 18 N -0.470 5.470 19 H 0.448 0.552 20 N -0.349 5.349 21 C 0.488 3.512 22 N -0.563 5.563 23 C 0.534 3.466 24 O -0.495 6.495 25 C -0.189 4.189 26 C -0.024 4.024 27 C -0.147 4.147 28 C -0.060 4.060 29 C -0.166 4.166 30 C 0.191 3.809 31 H 0.055 0.945 32 H 0.051 0.949 33 H 0.034 0.966 34 H 0.266 0.734 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.094 0.906 38 H 0.244 0.756 39 H 0.149 0.851 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.374 -12.076 -25.764 28.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.131 3.869 3 H 0.084 0.916 4 C -0.565 4.565 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.533 5.533 8 Si 0.711 3.289 9 H -0.205 1.205 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.319 5.319 13 C -0.075 4.075 14 C 0.368 3.632 15 O -0.389 6.389 16 C -0.264 4.264 17 C 0.037 3.963 18 N -0.185 5.185 19 H 0.295 0.705 20 N -0.139 5.139 21 C 0.233 3.767 22 N -0.308 5.308 23 C 0.320 3.680 24 O -0.371 6.371 25 C -0.199 4.199 26 C -0.043 4.043 27 C -0.166 4.166 28 C -0.079 4.079 29 C -0.187 4.187 30 C 0.092 3.908 31 H 0.074 0.926 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.070 0.930 37 H 0.113 0.887 38 H 0.259 0.741 39 H 0.166 0.834 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.963 -10.244 -25.283 27.296 hybrid contribution -0.578 -0.621 -0.657 1.073 sum 0.386 -10.865 -25.940 28.126 Atomic orbital electron populations 1.22489 0.99011 1.01014 0.99478 1.19322 0.89795 0.95412 0.82375 0.91629 1.21149 1.32691 1.14254 0.88427 0.90279 1.24854 0.95679 0.96488 0.95649 1.69863 1.45174 1.40258 0.97993 0.86945 0.80247 0.83989 0.77732 1.20465 1.22160 1.18564 1.47630 1.49978 1.11135 1.23107 1.22085 1.01087 0.83848 1.00522 1.16640 0.79453 0.85553 0.81557 1.90878 1.51863 1.19322 1.76806 1.20474 1.14948 0.93356 0.97590 1.24939 0.90554 0.98412 0.82430 1.43732 1.53449 1.06127 1.15231 0.70506 1.45203 1.48943 1.05022 1.14701 1.21630 0.87065 0.82665 0.85333 1.69106 1.25130 1.10760 1.25833 1.18785 0.79198 0.87679 0.82367 1.90798 1.45847 1.19813 1.80619 1.21303 1.05268 0.93145 1.00157 1.21225 0.92699 1.00254 0.90132 1.21278 1.01937 0.93226 1.00154 1.21144 0.94115 0.96792 0.95869 1.20557 1.05631 0.98647 0.93834 1.17856 0.95019 0.94640 0.83299 0.92582 0.93062 0.94661 0.92437 0.92472 0.93027 0.88716 0.74125 0.83353 0.84558 0.84554 0.85182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.26 8.66 37.15 0.32 -2.94 16 2 C 0.23 5.36 2.16 -69.09 -0.15 5.21 16 3 H 0.07 1.74 5.99 -51.93 -0.31 1.43 16 4 C -0.53 -13.97 8.83 -34.44 -0.30 -14.28 16 5 H 0.08 2.22 7.89 -52.49 -0.41 1.81 16 6 C 0.08 2.12 5.45 -17.82 -0.10 2.03 16 7 N -0.90 -26.44 13.96 55.43 0.77 -25.67 16 8 Si 0.88 21.58 24.37 -169.99 -4.14 17.44 16 9 H -0.28 -6.43 6.87 56.52 0.39 -6.05 16 10 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 11 H -0.26 -6.38 6.53 56.52 0.37 -6.01 16 12 N -0.59 -11.01 2.75 -176.76 -0.49 -11.50 16 13 C 0.07 0.83 7.71 59.84 0.46 1.29 16 14 C 0.58 11.68 7.63 -12.78 -0.10 11.58 16 15 O -0.51 -13.14 16.23 5.21 0.08 -13.05 16 16 C -0.25 -3.69 6.24 -102.80 -0.64 -4.33 16 17 C 0.18 1.38 9.99 -16.43 -0.16 1.21 16 18 N -0.47 -2.95 7.02 30.90 0.22 -2.73 16 19 H 0.45 0.60 8.62 -182.67 -1.58 -0.98 16 20 N -0.35 -3.99 3.92 -8.39 -0.03 -4.02 16 21 C 0.49 8.04 7.97 -154.18 -1.23 6.82 16 22 N -0.56 -11.58 10.34 -10.96 -0.11 -11.70 16 23 C 0.53 10.19 7.95 -12.88 -0.10 10.09 16 24 O -0.49 -10.79 17.45 4.95 0.09 -10.71 16 25 C -0.19 -2.60 5.88 -104.88 -0.62 -3.22 16 26 C -0.02 -0.25 9.67 -39.34 -0.38 -0.63 16 27 C -0.15 -1.03 10.02 -39.54 -0.40 -1.42 16 28 C -0.06 -0.35 10.02 -39.51 -0.40 -0.75 16 29 C -0.17 -1.14 9.87 -39.47 -0.39 -1.53 16 30 C 0.19 2.11 6.66 -83.82 -0.56 1.55 16 31 H 0.06 1.00 6.90 -51.93 -0.36 0.64 16 32 H 0.05 1.10 3.27 -51.93 -0.17 0.93 16 33 H 0.03 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.06 0.58 7.37 -51.93 -0.38 0.20 16 36 H 0.05 0.38 5.49 -51.93 -0.29 0.09 16 37 H 0.09 1.24 6.60 -51.93 -0.34 0.90 16 38 H 0.24 0.91 4.09 -52.49 -0.21 0.69 16 39 H 0.15 1.51 7.81 -52.49 -0.41 1.10 16 40 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 41 H 0.14 0.36 8.06 -52.49 -0.42 -0.07 16 42 H 0.13 0.45 7.72 -52.49 -0.41 0.05 16 LS Contribution 345.60 15.07 5.21 5.21 Total: -1.00 -42.32 345.60 -8.46 -50.78 By element: Atomic # 1 Polarization: 0.59 SS G_CDS: -5.32 Total: -4.72 kcal Atomic # 6 Polarization: 15.41 SS G_CDS: -4.74 Total: 10.67 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 0.36 Total: -55.62 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: 0.17 Total: -23.76 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.44 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -42.32 -8.46 -50.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264125874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.122 kcal (2) G-P(sol) polarization free energy of solvation -42.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds