Wall clock time and date at job start Sat Apr 11 2020 05:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 109.47371 * 2 1 4 4 C 1.50693 * 109.47397 * 120.00651 * 2 1 3 5 5 H 1.08001 * 120.00247 * 120.00123 * 4 2 1 6 6 C 1.37878 * 120.00070 * 299.99500 * 4 2 1 7 7 N 1.31509 * 120.00632 * 180.02562 * 6 4 2 8 8 Si 1.86810 * 119.99617 * 0.02562 * 6 4 2 9 9 H 1.48503 * 109.46784 * 89.99920 * 8 6 4 10 10 H 1.48499 * 109.46770 * 209.99843 * 8 6 4 11 11 H 1.48492 * 109.47127 * 329.99924 * 8 6 4 12 12 N 1.46504 * 109.46639 * 240.00510 * 2 1 3 13 13 C 1.46495 * 120.00281 * 299.99577 * 12 2 1 14 14 C 1.34783 * 119.99921 * 120.00112 * 12 2 1 15 15 O 1.21676 * 120.00098 * 7.89241 * 14 12 2 16 16 C 1.46832 * 119.99935 * 187.89231 * 14 12 2 17 17 C 1.38012 * 126.68381 * 353.20583 * 16 14 12 18 18 N 1.34588 * 108.88048 * 179.97438 * 17 16 14 19 19 H 0.96999 * 124.97980 * 179.97438 * 18 17 16 20 20 N 1.40006 * 110.03009 * 0.02562 * 18 17 16 21 21 C 1.36629 * 108.24742 * 359.73471 * 20 18 17 22 22 N 1.32085 * 122.61331 * 180.26100 * 21 20 18 23 23 C 1.33879 * 121.96815 * 0.17262 * 22 21 20 24 24 O 1.21968 * 120.78409 * 179.97438 * 23 22 21 25 25 C 1.47511 * 118.42558 * 0.02562 * 23 22 21 26 26 C 1.39267 * 121.83438 * 179.97438 * 25 23 22 27 27 C 1.37858 * 119.47971 * 179.09913 * 26 25 23 28 28 C 1.38723 * 120.44269 * 1.27121 * 27 26 25 29 29 C 1.37942 * 120.66351 * 358.98420 * 28 27 26 30 30 C 1.38410 * 131.56948 * 180.02562 * 20 18 17 31 31 H 1.09003 * 109.47371 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47072 * 299.99563 * 1 2 3 33 33 H 1.08999 * 109.47639 * 59.99233 * 1 2 3 34 34 H 0.97001 * 120.00783 * 180.02562 * 7 6 4 35 35 H 1.08998 * 109.47705 * 246.73096 * 13 12 2 36 36 H 1.08993 * 109.47419 * 126.72544 * 13 12 2 37 37 H 1.09006 * 109.47111 * 6.72894 * 13 12 2 38 38 H 1.07998 * 125.56012 * 359.93710 * 17 16 14 39 39 H 1.07999 * 120.25329 * 0.02562 * 26 25 23 40 40 H 1.08001 * 119.77140 * 180.25585 * 27 26 25 41 41 H 1.08002 * 119.67187 * 178.99656 * 28 27 26 42 42 H 1.08000 * 120.14927 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6533 -1.5886 1.1311 6 6 1.6994 -0.2395 2.4827 7 7 2.1381 -0.8592 3.5564 8 14 0.6248 1.2789 2.6542 9 1 -0.8027 0.8725 2.6999 10 1 0.9761 1.9949 3.9069 11 1 0.8471 2.1764 1.4922 12 7 2.0182 -0.6905 -1.1963 13 6 1.6643 -2.0931 -1.4282 14 6 2.7930 -0.0355 -2.0835 15 8 3.2057 1.0794 -1.8241 16 6 3.1392 -0.6672 -3.3630 17 6 2.8604 -1.9640 -3.7443 18 7 3.3378 -2.1649 -4.9865 19 1 3.2693 -2.9966 -5.4808 20 7 3.9489 -0.9975 -5.4600 21 6 3.8469 -0.0385 -4.4922 22 7 4.3280 1.1820 -4.6459 23 6 4.9486 1.5630 -5.7693 24 8 5.3843 2.6959 -5.8883 25 6 5.0919 0.5804 -6.8602 26 6 5.7242 0.9007 -8.0590 27 6 5.8477 -0.0610 -9.0390 28 6 5.3242 -1.3313 -8.8471 29 6 4.6907 -1.6602 -7.6667 30 6 4.5756 -0.7110 -6.6603 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8901 33 1 -0.3634 0.5139 -0.8899 34 1 1.9036 -0.5281 4.4375 35 1 2.5602 -2.7101 -1.3595 36 1 1.2262 -2.1979 -2.4207 37 1 0.9431 -2.4149 -0.6769 38 1 2.3439 -2.6980 -3.1436 39 1 6.1279 1.8904 -8.2137 40 1 6.3409 0.1811 -9.9688 41 1 5.4138 -2.0703 -9.6296 42 1 4.2866 -2.6518 -7.5260 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264125874.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:57 Heat of formation + Delta-G solvation = 72.799768 kcal Electronic energy + Delta-G solvation = -29006.534532 eV Core-core repulsion = 24954.664590 eV Total energy + Delta-G solvation = -4051.869942 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.61084 -41.07965 -40.24654 -39.15169 -37.26987 -36.78679 -35.03361 -34.34653 -32.58085 -32.18393 -31.32191 -30.45583 -28.01783 -27.08400 -25.52694 -25.37192 -24.62231 -23.42128 -22.26620 -21.16874 -20.11607 -19.58258 -18.92785 -18.53742 -17.91015 -17.66547 -17.38829 -17.19072 -16.83929 -16.24723 -15.85109 -15.72042 -15.48760 -15.44713 -15.20491 -14.91097 -14.80447 -14.38871 -14.07599 -13.98659 -13.77785 -13.49756 -13.22493 -12.96803 -12.78592 -12.62652 -12.54629 -12.27639 -12.25860 -11.99162 -11.71491 -11.55776 -11.26292 -10.77568 -10.73885 -10.32392 -10.20449 -9.76864 -9.35158 -9.04168 -8.30255 -6.32362 -0.62542 -0.42910 -0.26651 0.27529 0.50536 1.27314 1.40031 1.48122 1.86901 2.03175 2.32249 2.40706 2.45815 2.75699 2.86030 3.06483 3.11066 3.31514 3.50673 3.69606 3.85784 3.96045 4.10041 4.14721 4.17752 4.34550 4.40581 4.54401 4.60632 4.64639 4.67922 4.77350 4.83282 4.88611 5.07235 5.18770 5.19626 5.28327 5.36213 5.41875 5.57598 5.64278 5.82945 6.13954 6.29280 6.58494 6.70118 6.83520 7.12437 7.30679 7.53251 8.85297 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023030 B = 0.002843 C = 0.002631 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1215.503466 B = 9846.339657 C =10640.071171 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.233 3.767 3 H 0.017 0.983 4 C -0.516 4.516 5 H 0.056 0.944 6 C 0.025 3.975 7 N -0.938 5.938 8 Si 0.932 3.068 9 H -0.248 1.248 10 H -0.302 1.302 11 H -0.271 1.271 12 N -0.591 5.591 13 C 0.049 3.951 14 C 0.575 3.425 15 O -0.595 6.595 16 C -0.307 4.307 17 C 0.254 3.746 18 N -0.416 5.416 19 H 0.481 0.519 20 N -0.345 5.345 21 C 0.470 3.530 22 N -0.645 5.645 23 C 0.514 3.486 24 O -0.566 6.566 25 C -0.220 4.220 26 C -0.047 4.047 27 C -0.128 4.128 28 C -0.042 4.042 29 C -0.144 4.144 30 C 0.171 3.829 31 H 0.085 0.915 32 H 0.036 0.964 33 H 0.053 0.947 34 H 0.266 0.734 35 H 0.084 0.916 36 H 0.113 0.887 37 H 0.089 0.911 38 H 0.298 0.702 39 H 0.132 0.868 40 H 0.171 0.829 41 H 0.189 0.811 42 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -18.524 -30.172 35.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.129 3.871 3 H 0.035 0.965 4 C -0.555 4.555 5 H 0.074 0.926 6 C -0.173 4.173 7 N -0.578 5.578 8 Si 0.760 3.240 9 H -0.173 1.173 10 H -0.230 1.230 11 H -0.197 1.197 12 N -0.321 5.321 13 C -0.092 4.092 14 C 0.365 3.635 15 O -0.476 6.476 16 C -0.324 4.324 17 C 0.110 3.890 18 N -0.133 5.133 19 H 0.336 0.664 20 N -0.132 5.132 21 C 0.216 3.784 22 N -0.394 5.394 23 C 0.303 3.697 24 O -0.448 6.448 25 C -0.229 4.229 26 C -0.067 4.067 27 C -0.147 4.147 28 C -0.060 4.060 29 C -0.165 4.165 30 C 0.073 3.927 31 H 0.104 0.896 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.131 0.869 37 H 0.108 0.892 38 H 0.312 0.688 39 H 0.150 0.850 40 H 0.188 0.812 41 H 0.206 0.794 42 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -1.071 -16.873 -29.804 34.265 hybrid contribution 0.100 1.077 0.538 1.208 sum -0.971 -15.796 -29.265 33.271 Atomic orbital electron populations 1.22316 0.96047 1.02983 0.99663 1.18935 0.91950 0.93103 0.83093 0.96461 1.21393 1.31225 1.13092 0.89783 0.92566 1.25534 0.97242 0.98907 0.95640 1.69974 1.47287 1.42095 0.98486 0.86132 0.80483 0.80802 0.76587 1.17256 1.23005 1.19679 1.47597 1.49562 1.13623 1.21367 1.22630 1.02743 0.80008 1.03822 1.17300 0.78299 0.84796 0.83079 1.90829 1.55098 1.23021 1.78675 1.19830 1.20117 0.96397 0.96075 1.25522 0.86044 0.95659 0.81801 1.43955 1.49494 1.05336 1.14516 0.66447 1.45048 1.48252 1.05787 1.14089 1.21563 0.87106 0.82776 0.86919 1.68841 1.27985 1.14408 1.28167 1.19383 0.78431 0.88110 0.83731 1.90696 1.49384 1.22585 1.82150 1.20939 1.08508 0.93789 0.99681 1.21276 0.93762 1.01111 0.90532 1.21720 1.00284 0.92895 0.99777 1.21808 0.91195 0.96703 0.96336 1.21169 1.03812 0.99301 0.92172 1.18058 0.95972 0.94572 0.84109 0.89636 0.94510 0.92757 0.92437 0.89766 0.86932 0.89212 0.68818 0.85011 0.81192 0.79355 0.80118 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.93 8.66 71.98 0.62 -5.31 16 2 C 0.23 10.98 2.16 44.24 0.10 11.08 16 3 H 0.02 0.99 5.99 -2.39 -0.01 0.98 16 4 C -0.52 -28.06 8.83 25.60 0.23 -27.84 16 5 H 0.06 3.24 7.89 -2.91 -0.02 3.21 16 6 C 0.03 1.45 5.45 84.66 0.46 1.91 16 7 N -0.94 -56.96 13.96 21.45 0.30 -56.66 16 8 Si 0.93 45.78 24.37 68.60 1.67 47.45 16 9 H -0.25 -10.87 6.87 99.48 0.68 -10.19 16 10 H -0.30 -15.07 7.11 99.48 0.71 -14.36 16 11 H -0.27 -13.69 6.53 99.48 0.65 -13.04 16 12 N -0.59 -21.89 2.75 -831.36 -2.29 -24.18 16 13 C 0.05 0.96 7.71 127.77 0.98 1.94 16 14 C 0.58 24.01 7.63 86.49 0.66 24.67 16 15 O -0.60 -33.60 16.23 -4.27 -0.07 -33.67 16 16 C -0.31 -8.90 6.24 -18.68 -0.12 -9.01 16 17 C 0.25 2.48 9.99 84.22 0.84 3.32 16 18 N -0.42 -2.41 7.02 -56.15 -0.39 -2.81 16 19 H 0.48 -3.31 8.62 -213.38 -1.84 -5.15 16 20 N -0.35 -6.93 3.92 -180.47 -0.71 -7.64 16 21 C 0.47 16.03 7.97 136.14 1.08 17.12 16 22 N -0.64 -29.77 10.34 -307.19 -3.18 -32.94 16 23 C 0.51 22.37 7.95 86.83 0.69 23.06 16 24 O -0.57 -28.88 17.45 -5.21 -0.09 -28.97 16 25 C -0.22 -6.41 5.88 -20.03 -0.12 -6.53 16 26 C -0.05 -1.03 9.67 22.43 0.22 -0.81 16 27 C -0.13 -1.31 10.02 22.30 0.22 -1.08 16 28 C -0.04 -0.20 10.02 22.32 0.22 0.03 16 29 C -0.14 -1.04 9.87 22.34 0.22 -0.82 16 30 C 0.17 3.34 6.66 38.80 0.26 3.60 16 31 H 0.08 2.79 6.90 -2.39 -0.02 2.77 16 32 H 0.04 1.53 3.27 -2.38 -0.01 1.53 16 33 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 35 H 0.08 1.24 7.37 -2.39 -0.02 1.22 16 36 H 0.11 0.79 5.49 -2.39 -0.01 0.78 16 37 H 0.09 1.96 6.60 -2.38 -0.02 1.95 16 38 H 0.30 -0.46 4.09 -2.91 -0.01 -0.47 16 39 H 0.13 3.14 7.81 -2.91 -0.02 3.11 16 40 H 0.17 0.59 8.06 -2.91 -0.02 0.57 16 41 H 0.19 -0.85 8.06 -2.91 -0.02 -0.88 16 42 H 0.18 -0.55 7.72 -2.91 -0.02 -0.57 16 Total: -1.00 -117.24 345.60 1.02 -116.22 By element: Atomic # 1 Polarization: -11.33 SS G_CDS: -0.80 Total: -12.14 kcal Atomic # 6 Polarization: 28.75 SS G_CDS: 6.58 Total: 35.33 kcal Atomic # 7 Polarization: -117.96 SS G_CDS: -6.27 Total: -124.23 kcal Atomic # 8 Polarization: -62.48 SS G_CDS: -0.16 Total: -62.64 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 1.67 Total: 47.45 kcal Total: -117.24 1.02 -116.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264125874.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.020 kcal (2) G-P(sol) polarization free energy of solvation -117.238 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -116.221 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds