Wall clock time and date at job start Sat Apr 11 2020 05:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08992 * 109.47035 * 2 1 4 4 C 1.50707 * 109.46908 * 239.99662 * 2 1 3 5 5 H 1.08001 * 119.99821 * 239.99675 * 4 2 1 6 6 C 1.37880 * 119.99653 * 60.00097 * 4 2 1 7 7 N 1.31517 * 120.00146 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 119.99602 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.47090 * 90.00133 * 8 6 4 10 10 H 1.48499 * 109.46971 * 209.99870 * 8 6 4 11 11 H 1.48497 * 109.47455 * 330.00217 * 8 6 4 12 12 N 1.46503 * 109.47129 * 120.00140 * 2 1 3 13 13 C 1.46501 * 120.00256 * 59.99709 * 12 2 1 14 14 C 1.34781 * 119.99437 * 239.99723 * 12 2 1 15 15 O 1.21671 * 120.00502 * 4.55258 * 14 12 2 16 16 C 1.46836 * 119.99505 * 184.55036 * 14 12 2 17 17 C 1.38009 * 126.68832 * 322.99812 * 16 14 12 18 18 N 1.34581 * 108.88296 * 179.76527 * 17 16 14 19 19 H 0.97001 * 124.98789 * 180.02562 * 18 17 16 20 20 N 1.40013 * 110.03066 * 0.38583 * 18 17 16 21 21 C 1.36619 * 108.24814 * 359.61243 * 20 18 17 22 22 N 1.32087 * 122.62170 * 180.24808 * 21 20 18 23 23 C 1.33879 * 121.95745 * 359.97438 * 22 21 20 24 24 O 1.21972 * 120.77870 * 179.97438 * 23 22 21 25 25 C 1.47508 * 118.43056 * 0.02562 * 23 22 21 26 26 C 1.39265 * 121.83403 * 179.97438 * 25 23 22 27 27 C 1.37845 * 119.48587 * 179.97438 * 26 25 23 28 28 C 1.38727 * 120.44799 * 0.09248 * 27 26 25 29 29 C 1.37936 * 120.65894 * 359.93964 * 28 27 26 30 30 C 1.38399 * 131.56935 * 179.90134 * 20 18 17 31 31 H 1.09005 * 109.47385 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47202 * 300.00116 * 1 2 3 33 33 H 1.08991 * 109.47650 * 60.00019 * 1 2 3 34 34 H 0.96993 * 119.99908 * 179.97438 * 7 6 4 35 35 H 1.08997 * 109.46868 * 264.81104 * 13 12 2 36 36 H 1.08999 * 109.46754 * 24.81135 * 13 12 2 37 37 H 1.08999 * 109.46932 * 144.81288 * 13 12 2 38 38 H 1.07996 * 125.55775 * 359.96146 * 17 16 14 39 39 H 1.08003 * 120.25835 * 0.02562 * 26 25 23 40 40 H 1.07999 * 119.77626 * 180.02562 * 27 26 25 41 41 H 1.08003 * 119.67020 * 179.97438 * 28 27 26 42 42 H 1.08004 * 120.14729 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6991 -0.2394 -2.4828 7 7 0.9426 0.8296 -2.6034 8 14 2.3223 -1.1197 -4.0079 9 1 1.3446 -2.1617 -4.4123 10 1 2.4870 -0.1404 -5.1120 11 1 3.6306 -1.7568 -3.7120 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 6 2.7932 -0.0356 2.0833 15 8 3.0191 1.1507 1.9344 16 6 3.3649 -0.7536 3.2295 17 6 2.7584 -1.7542 3.9614 18 7 3.6041 -2.1622 4.9256 19 1 3.4139 -2.8576 5.5745 20 7 4.7957 -1.4300 4.8597 21 6 4.6980 -0.5462 3.8224 22 7 5.6720 0.2864 3.5022 23 6 6.8271 0.3193 4.1783 24 8 7.7126 1.0969 3.8637 25 6 7.0039 -0.6077 5.3120 26 6 8.1761 -0.6341 6.0634 27 6 8.2892 -1.5200 7.1134 28 6 7.2466 -2.3818 7.4214 29 6 6.0804 -2.3666 6.6849 30 6 5.9478 -1.4801 5.6249 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 0.7086 1.1611 -3.4844 35 1 0.7898 -2.1448 2.0764 36 1 1.4395 -2.5734 0.4757 37 1 2.5006 -2.6049 1.9046 38 1 1.7681 -2.1479 3.7868 39 1 8.9900 0.0350 5.8259 40 1 9.1960 -1.5442 7.6995 41 1 7.3489 -3.0712 8.2465 42 1 5.2738 -3.0409 6.9323 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264125877.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:02 Heat of formation + Delta-G solvation = 86.509316 kcal Electronic energy + Delta-G solvation = -28998.344174 eV Core-core repulsion = 24947.068723 eV Total energy + Delta-G solvation = -4051.275451 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 340.132 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.61497 -39.99265 -38.67245 -38.09739 -35.82812 -35.20162 -33.66405 -32.75272 -31.45251 -30.58243 -30.12506 -28.89091 -26.34701 -25.19104 -24.55887 -24.38022 -23.41972 -22.46196 -20.84192 -20.04545 -19.04270 -18.28540 -17.54560 -16.88719 -16.65573 -16.40576 -16.27066 -15.77797 -15.28280 -15.00144 -14.57672 -14.54153 -14.45061 -14.21966 -14.18885 -13.57581 -13.21379 -12.93158 -12.63683 -12.49859 -12.19884 -11.91264 -11.83550 -11.58511 -11.42053 -11.03210 -10.93869 -10.83495 -10.72470 -10.57349 -10.22756 -10.13727 -9.58083 -9.22091 -9.08217 -8.98939 -8.86275 -8.38780 -7.96457 -7.57540 -6.03185 -4.10917 0.25134 0.40340 0.58535 1.08156 1.69155 2.88084 2.89940 3.29559 3.37916 3.39811 3.45031 3.75378 3.94419 3.98790 4.06430 4.17127 4.30601 4.44222 4.55573 4.58638 4.68566 4.74679 4.97836 5.16056 5.27851 5.30819 5.34547 5.46967 5.58384 5.69876 5.79275 5.86258 5.98517 6.22645 6.25663 6.27480 6.76992 6.79653 6.85023 7.08146 7.44307 7.57716 7.75023 7.85235 8.06149 8.23238 8.29244 8.52612 8.88013 9.10147 9.55512 11.02228 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.002929 C = 0.002757 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.245453 B = 9556.316988 C =10153.683649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.261 3.739 3 H 0.066 0.934 4 C -0.526 4.526 5 H 0.060 0.940 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.588 5.588 13 C 0.076 3.924 14 C 0.582 3.418 15 O -0.520 6.520 16 C -0.240 4.240 17 C 0.189 3.811 18 N -0.471 5.471 19 H 0.448 0.552 20 N -0.347 5.347 21 C 0.488 3.512 22 N -0.568 5.568 23 C 0.535 3.465 24 O -0.495 6.495 25 C -0.188 4.188 26 C -0.024 4.024 27 C -0.147 4.147 28 C -0.060 4.060 29 C -0.166 4.166 30 C 0.191 3.809 31 H 0.029 0.971 32 H 0.012 0.988 33 H 0.093 0.907 34 H 0.263 0.737 35 H 0.042 0.958 36 H 0.087 0.913 37 H 0.051 0.949 38 H 0.224 0.776 39 H 0.149 0.851 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 -14.844 23.376 27.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.161 3.839 3 H 0.084 0.916 4 C -0.565 4.565 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.320 5.320 13 C -0.068 4.068 14 C 0.367 3.633 15 O -0.396 6.396 16 C -0.257 4.257 17 C 0.051 3.949 18 N -0.188 5.188 19 H 0.295 0.705 20 N -0.136 5.136 21 C 0.232 3.768 22 N -0.313 5.313 23 C 0.320 3.680 24 O -0.370 6.370 25 C -0.198 4.198 26 C -0.043 4.043 27 C -0.166 4.166 28 C -0.079 4.079 29 C -0.187 4.187 30 C 0.092 3.908 31 H 0.048 0.952 32 H 0.031 0.969 33 H 0.112 0.888 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.105 0.895 37 H 0.070 0.930 38 H 0.240 0.760 39 H 0.167 0.833 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 4.468 -13.186 22.600 26.544 hybrid contribution 0.197 -1.684 0.219 1.710 sum 4.664 -14.871 22.819 27.633 Atomic orbital electron populations 1.22091 0.98079 0.99287 1.00946 1.18977 0.90832 0.94698 0.79407 0.91579 1.21318 1.31801 1.13096 0.90258 0.92206 1.24875 0.94943 0.94956 0.98928 1.69873 1.36341 1.22493 1.23769 0.86507 0.79185 0.79275 0.82514 1.20720 1.21096 1.19897 1.48093 1.49273 1.11239 1.23435 1.21810 0.97886 0.84060 1.03074 1.16669 0.79359 0.86316 0.80926 1.90837 1.59448 1.14590 1.74733 1.20556 0.93175 1.06098 1.05848 1.23468 0.94851 0.91703 0.84893 1.43479 1.05094 1.35965 1.34224 0.70515 1.45132 1.06985 1.31492 1.30026 1.21656 0.93534 0.81167 0.80399 1.69075 1.03065 1.25433 1.33708 1.18752 0.85370 0.82647 0.81192 1.90801 1.40695 1.38255 1.67289 1.21295 0.94703 1.00908 1.02873 1.21221 0.95504 0.95875 0.91690 1.21271 0.99841 0.96913 0.98581 1.21138 0.91804 0.97200 0.97808 1.20549 1.00441 1.00961 0.96722 1.17846 0.82685 0.97693 0.92533 0.95226 0.96885 0.88811 0.92675 0.93969 0.89458 0.93016 0.75986 0.83338 0.84567 0.84576 0.85203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.97 37.16 0.33 -2.98 16 2 C 0.26 6.49 2.63 -69.08 -0.18 6.31 16 3 H 0.07 1.96 6.91 -51.93 -0.36 1.60 16 4 C -0.53 -14.01 7.96 -34.44 -0.27 -14.28 16 5 H 0.06 1.56 7.42 -52.49 -0.39 1.17 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 N -0.59 -11.83 2.75 -176.75 -0.49 -12.32 16 13 C 0.08 1.05 7.96 59.85 0.48 1.52 16 14 C 0.58 12.20 7.59 -12.78 -0.10 12.11 16 15 O -0.52 -13.69 16.44 5.21 0.09 -13.60 16 16 C -0.24 -3.72 5.57 -102.79 -0.57 -4.30 16 17 C 0.19 1.54 9.68 -16.43 -0.16 1.38 16 18 N -0.47 -3.08 7.02 30.90 0.22 -2.86 16 19 H 0.45 0.70 8.62 -182.66 -1.58 -0.88 16 20 N -0.35 -4.09 3.92 -8.39 -0.03 -4.13 16 21 C 0.49 8.31 8.10 -154.18 -1.25 7.06 16 22 N -0.57 -12.07 10.44 -10.96 -0.11 -12.19 16 23 C 0.53 10.52 7.95 -12.88 -0.10 10.42 16 24 O -0.49 -11.09 17.45 4.94 0.09 -11.00 16 25 C -0.19 -2.67 5.88 -104.88 -0.62 -3.29 16 26 C -0.02 -0.26 9.67 -39.34 -0.38 -0.64 16 27 C -0.15 -1.07 10.02 -39.54 -0.40 -1.47 16 28 C -0.06 -0.37 10.02 -39.51 -0.40 -0.76 16 29 C -0.17 -1.19 9.87 -39.48 -0.39 -1.58 16 30 C 0.19 2.18 6.66 -83.83 -0.56 1.62 16 31 H 0.03 0.60 7.67 -51.93 -0.40 0.20 16 32 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.09 2.39 6.07 -51.93 -0.32 2.07 16 34 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 35 H 0.04 0.42 7.31 -51.93 -0.38 0.04 16 36 H 0.09 1.35 7.10 -51.93 -0.37 0.98 16 37 H 0.05 0.56 5.88 -51.93 -0.31 0.26 16 38 H 0.22 0.80 6.20 -52.49 -0.33 0.48 16 39 H 0.15 1.57 7.81 -52.48 -0.41 1.16 16 40 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.14 0.39 8.06 -52.48 -0.42 -0.04 16 42 H 0.13 0.48 7.72 -52.48 -0.41 0.08 16 LS Contribution 355.31 15.07 5.35 5.35 Total: -1.00 -41.20 355.31 -9.58 -50.78 By element: Atomic # 1 Polarization: 1.11 SS G_CDS: -5.63 Total: -4.52 kcal Atomic # 6 Polarization: 17.47 SS G_CDS: -4.66 Total: 12.81 kcal Atomic # 7 Polarization: -56.11 SS G_CDS: 0.21 Total: -55.90 kcal Atomic # 8 Polarization: -24.78 SS G_CDS: 0.17 Total: -24.61 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -41.20 -9.58 -50.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264125877.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.289 kcal (2) G-P(sol) polarization free energy of solvation -41.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds