Wall clock time and date at job start Sat Apr 11 2020 05:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47026 * 2 1 4 4 S 1.65598 * 120.00058 * 164.99703 * 3 2 1 5 5 O 1.42101 * 106.40238 * 311.46388 * 4 3 2 6 6 O 1.42099 * 106.40264 * 178.54323 * 4 3 2 7 7 C 1.76206 * 107.21555 * 65.00397 * 4 3 2 8 8 C 1.38361 * 119.85107 * 270.24982 * 7 4 3 9 9 C 1.37955 * 120.14138 * 180.25791 * 8 7 4 10 10 C 1.39575 * 119.85263 * 359.49245 * 9 8 7 11 11 C 1.47848 * 120.14487 * 180.27853 * 10 9 8 12 12 O 1.21550 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00150 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00008 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47072 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47040 * 180.02562 * 15 14 13 17 17 C 1.50708 * 109.47202 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99553 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00012 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99920 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47133 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47199 * 120.00059 * 21 19 17 24 24 H 1.48493 * 109.47059 * 240.00204 * 21 19 17 25 25 C 1.39579 * 119.71401 * 0.25207 * 10 9 8 26 26 C 1.37958 * 119.84937 * 0.02562 * 25 10 9 27 27 H 1.08997 * 109.47381 * 60.00092 * 1 2 3 28 28 H 1.09006 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47652 * 299.99809 * 1 2 3 30 30 H 1.09005 * 109.47145 * 240.00159 * 2 1 3 31 31 H 1.08997 * 109.47381 * 119.99908 * 2 1 3 32 32 H 0.97001 * 120.00080 * 345.00782 * 3 2 1 33 33 H 1.07998 * 119.92846 * 0.02562 * 8 7 4 34 34 H 1.08002 * 120.07573 * 179.77464 * 9 8 7 35 35 H 0.96996 * 119.99601 * 359.97438 * 13 11 10 36 36 H 1.08997 * 109.47252 * 300.00049 * 14 13 11 37 37 H 1.09007 * 109.46893 * 60.00137 * 14 13 11 38 38 H 1.09005 * 109.46987 * 299.99854 * 15 14 13 39 39 H 1.08998 * 109.47290 * 60.00029 * 15 14 13 40 40 H 1.09005 * 109.46818 * 299.99598 * 16 15 14 41 41 H 1.08993 * 109.47662 * 60.00361 * 16 15 14 42 42 H 0.97002 * 119.99545 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.07575 * 180.02562 * 25 10 9 44 44 H 1.08006 * 119.92205 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6003 1.7001 0.3712 5 8 3.8848 0.9833 1.5647 6 8 3.7649 3.1065 0.2513 7 6 4.5894 0.9738 -0.8933 8 6 5.0291 -0.3312 -0.7593 9 6 5.8082 -0.9041 -1.7431 10 6 6.1438 -0.1678 -2.8804 11 6 6.9733 -0.7774 -3.9416 12 8 7.3649 -1.9221 -3.8246 13 7 7.2960 -0.0636 -5.0383 14 6 8.1184 -0.6675 -6.0896 15 6 8.3355 0.3476 -7.2136 16 6 9.1938 -0.2833 -8.3118 17 6 9.4082 0.7167 -9.4187 18 1 8.9751 1.7034 -9.3462 19 6 10.1571 0.3720 -10.5237 20 7 10.6849 -0.8294 -10.6117 21 14 10.4223 1.6113 -11.8960 22 1 9.7296 2.8805 -11.5574 23 1 11.8759 1.8689 -12.0564 24 1 9.8725 1.0700 -13.1648 25 6 5.6924 1.1465 -3.0117 26 6 4.9188 1.7093 -2.0178 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.4149 2.1090 -0.2173 33 1 4.7650 -0.9014 0.1191 34 1 6.1540 -1.9217 -1.6358 35 1 6.9838 0.8500 -5.1315 36 1 9.0821 -0.9610 -5.6735 37 1 7.6114 -1.5467 -6.4874 38 1 7.3715 0.6406 -7.6297 39 1 8.8422 1.2270 -6.8161 40 1 10.1578 -0.5767 -7.8959 41 1 8.6868 -1.1625 -8.7093 42 1 11.2121 -1.0718 -11.3890 43 1 5.9482 1.7214 -3.8894 44 1 4.5692 2.7263 -2.1180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264223493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:05 Heat of formation + Delta-G solvation = -101.862266 kcal Electronic energy + Delta-G solvation = -25940.315294 eV Core-core repulsion = 21984.022638 eV Total energy + Delta-G solvation = -3956.292656 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.45012 -38.61891 -37.71938 -36.43016 -36.28874 -35.61815 -33.53106 -32.22999 -31.57258 -30.91943 -30.28969 -27.02718 -24.78449 -23.57362 -23.29897 -22.73921 -20.98303 -20.39808 -19.99814 -18.72913 -18.02699 -17.44901 -16.86370 -16.51890 -16.04929 -15.51685 -15.40150 -15.35472 -15.23925 -14.77474 -14.48374 -14.27241 -14.16080 -14.01708 -13.70126 -13.24293 -13.19615 -12.57243 -12.53004 -12.45796 -12.35498 -12.25098 -12.01446 -11.94766 -11.83978 -11.71179 -11.40958 -10.97063 -10.82466 -10.63282 -10.20295 -10.09288 -9.95989 -9.85750 -9.55392 -9.49878 -9.17132 -8.97156 -8.42657 -6.06966 -4.10316 -0.20435 0.08160 0.81493 2.29044 2.62671 3.07851 3.22251 3.26512 3.34306 3.37559 3.42438 3.83332 4.25597 4.33372 4.35551 4.39765 4.47780 4.54331 4.71874 4.77005 4.89809 4.99251 5.09642 5.29049 5.33227 5.39802 5.40196 5.51346 5.54088 5.58260 5.63053 5.65734 5.82021 6.04237 6.23908 6.29685 6.38309 6.48759 6.69295 6.90184 7.45544 7.57249 7.68638 7.91178 8.09565 8.32031 8.96394 9.54295 11.04280 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.001757 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.291435 B =15933.931274 C =16289.501082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.108 3.892 3 N -1.117 6.117 4 S 2.697 3.303 5 O -0.954 6.954 6 O -0.956 6.956 7 C -0.664 4.664 8 C -0.029 4.029 9 C -0.084 4.084 10 C -0.069 4.069 11 C 0.544 3.456 12 O -0.531 6.531 13 N -0.715 5.715 14 C 0.115 3.885 15 C -0.122 4.122 16 C 0.023 3.977 17 C -0.523 4.523 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.893 5.893 21 Si 0.894 3.106 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C -0.110 4.110 26 C -0.025 4.025 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.064 0.936 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.419 0.581 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.399 0.601 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.055 0.945 39 H 0.055 0.945 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.140 0.860 44 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.312 3.516 23.509 31.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.018 4.018 3 N -0.878 5.878 4 S 2.786 3.214 5 O -0.943 6.943 6 O -0.946 6.946 7 C -0.751 4.751 8 C -0.048 4.048 9 C -0.103 4.103 10 C -0.073 4.073 11 C 0.329 3.671 12 O -0.409 6.409 13 N -0.366 5.366 14 C -0.008 4.008 15 C -0.160 4.160 16 C -0.014 4.014 17 C -0.561 4.561 18 H 0.074 0.926 19 C -0.145 4.145 20 N -0.532 5.532 21 Si 0.721 3.279 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.129 4.129 26 C -0.044 4.044 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.254 0.746 33 H 0.165 0.835 34 H 0.166 0.834 35 H 0.234 0.766 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.074 0.926 39 H 0.074 0.926 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.157 0.843 44 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.473 2.863 24.200 31.827 hybrid contribution 0.037 0.975 -1.783 2.033 sum -20.436 3.837 22.417 30.575 Atomic orbital electron populations 1.21959 0.93797 1.03254 1.02874 1.21337 0.96771 0.81202 1.02449 1.55565 1.28576 1.15066 1.88634 1.01840 0.72398 0.73290 0.73856 1.93601 1.83809 1.74524 1.42408 1.93612 1.85171 1.28942 1.86846 1.31083 1.19881 1.06294 1.17792 1.20937 0.93441 0.92388 0.98082 1.21445 0.96027 1.00947 0.91914 1.20507 0.96847 0.94528 0.95374 1.18257 0.80648 0.86047 0.82118 1.90800 1.53999 1.17372 1.78680 1.46189 1.53202 1.17153 1.20063 1.21757 0.94321 0.97521 0.87153 1.21911 1.01204 0.97397 0.95458 1.19038 0.94462 0.96240 0.91685 1.21225 1.32230 0.99242 1.03441 0.92566 1.25036 0.95693 0.95336 0.98440 1.69973 1.34497 1.19072 1.29643 0.86515 0.77924 0.81416 0.82001 1.19758 1.20974 1.20983 1.21518 0.97465 0.94295 0.99625 1.20866 0.93669 0.99193 0.90650 0.91796 0.90766 0.91685 0.91461 0.89989 0.74558 0.83537 0.83433 0.76585 0.91328 0.91344 0.92617 0.92589 0.96197 0.96210 0.92936 0.84260 0.83518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.43 10.05 37.16 0.37 -0.06 16 2 C 0.11 0.42 6.94 -4.04 -0.03 0.40 16 3 N -1.12 -5.28 6.00 -10.61 -0.06 -5.35 16 4 S 2.70 21.10 5.73 -107.50 -0.62 20.48 16 5 O -0.95 -9.97 16.74 -57.17 -0.96 -10.93 16 6 O -0.96 -9.95 17.27 -57.17 -0.99 -10.94 16 7 C -0.66 -5.46 5.95 -39.49 -0.24 -5.69 16 8 C -0.03 -0.25 9.50 -39.64 -0.38 -0.62 16 9 C -0.08 -0.85 9.60 -39.19 -0.38 -1.22 16 10 C -0.07 -0.77 5.87 -104.97 -0.62 -1.39 16 11 C 0.54 7.76 7.77 -12.33 -0.10 7.66 16 12 O -0.53 -9.48 16.35 5.32 0.09 -9.39 16 13 N -0.72 -9.66 5.51 -61.25 -0.34 -10.00 16 14 C 0.11 1.92 5.67 -4.04 -0.02 1.89 16 15 C -0.12 -2.27 5.27 -26.73 -0.14 -2.41 16 16 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 17 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 18 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 19 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 20 N -0.89 -26.43 13.29 55.43 0.74 -25.70 16 21 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 22 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 25 C -0.11 -0.97 9.54 -39.18 -0.37 -1.35 16 26 C -0.02 -0.20 9.50 -39.64 -0.38 -0.58 16 27 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 28 H 0.07 0.15 8.14 -51.93 -0.42 -0.28 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.32 7.75 -51.93 -0.40 -0.08 16 32 H 0.42 1.23 8.65 -34.47 -0.30 0.93 16 33 H 0.15 0.92 7.61 -52.49 -0.40 0.52 16 34 H 0.15 1.45 7.65 -52.49 -0.40 1.05 16 35 H 0.40 4.20 6.51 -40.82 -0.27 3.93 16 36 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 38 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 43 H 0.14 0.93 6.41 -52.49 -0.34 0.59 16 44 H 0.15 0.91 7.60 -52.48 -0.40 0.51 16 LS Contribution 386.61 15.07 5.83 5.83 Total: -1.00 -36.55 386.61 -10.42 -46.97 By element: Atomic # 1 Polarization: 5.19 SS G_CDS: -6.27 Total: -1.08 kcal Atomic # 6 Polarization: -13.26 SS G_CDS: -2.82 Total: -16.08 kcal Atomic # 7 Polarization: -41.38 SS G_CDS: 0.34 Total: -41.04 kcal Atomic # 8 Polarization: -29.40 SS G_CDS: -1.86 Total: -31.26 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 21.10 SS G_CDS: -0.62 Total: 20.48 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -36.55 -10.42 -46.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264223493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.888 kcal (2) G-P(sol) polarization free energy of solvation -36.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.975 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds