Wall clock time and date at job start Sat Apr 11 2020 05:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47026 * 2 1 4 4 S 1.65598 * 120.00058 * 164.99703 * 3 2 1 5 5 O 1.42101 * 106.40238 * 311.46388 * 4 3 2 6 6 O 1.42099 * 106.40264 * 178.54323 * 4 3 2 7 7 C 1.76206 * 107.21555 * 65.00397 * 4 3 2 8 8 C 1.38361 * 119.85107 * 270.24982 * 7 4 3 9 9 C 1.37955 * 120.14138 * 180.25791 * 8 7 4 10 10 C 1.39575 * 119.85263 * 359.49245 * 9 8 7 11 11 C 1.47848 * 120.14487 * 180.27853 * 10 9 8 12 12 O 1.21550 * 119.99883 * 359.97438 * 11 10 9 13 13 N 1.34779 * 120.00150 * 180.02562 * 11 10 9 14 14 C 1.46501 * 120.00008 * 179.97438 * 13 11 10 15 15 C 1.52996 * 109.47072 * 179.97438 * 14 13 11 16 16 C 1.52997 * 109.47040 * 180.02562 * 15 14 13 17 17 C 1.50708 * 109.47202 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99553 * 359.97438 * 17 16 15 19 19 C 1.37874 * 120.00012 * 179.97438 * 17 16 15 20 20 N 1.31514 * 120.00070 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99920 * 179.97438 * 19 17 16 22 22 H 1.48498 * 109.47133 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47199 * 120.00059 * 21 19 17 24 24 H 1.48493 * 109.47059 * 240.00204 * 21 19 17 25 25 C 1.39579 * 119.71401 * 0.25207 * 10 9 8 26 26 C 1.37958 * 119.84937 * 0.02562 * 25 10 9 27 27 H 1.08997 * 109.47381 * 60.00092 * 1 2 3 28 28 H 1.09006 * 109.46982 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47652 * 299.99809 * 1 2 3 30 30 H 1.09005 * 109.47145 * 240.00159 * 2 1 3 31 31 H 1.08997 * 109.47381 * 119.99908 * 2 1 3 32 32 H 0.97001 * 120.00080 * 345.00782 * 3 2 1 33 33 H 1.07998 * 119.92846 * 0.02562 * 8 7 4 34 34 H 1.08002 * 120.07573 * 179.77464 * 9 8 7 35 35 H 0.96996 * 119.99601 * 359.97438 * 13 11 10 36 36 H 1.08997 * 109.47252 * 300.00049 * 14 13 11 37 37 H 1.09007 * 109.46893 * 60.00137 * 14 13 11 38 38 H 1.09005 * 109.46987 * 299.99854 * 15 14 13 39 39 H 1.08998 * 109.47290 * 60.00029 * 15 14 13 40 40 H 1.09005 * 109.46818 * 299.99598 * 16 15 14 41 41 H 1.08993 * 109.47662 * 60.00361 * 16 15 14 42 42 H 0.97002 * 119.99545 * 180.02562 * 20 19 17 43 43 H 1.07997 * 120.07575 * 180.02562 * 25 10 9 44 44 H 1.08006 * 119.92205 * 179.97438 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 16 3.6003 1.7001 0.3712 5 8 3.8848 0.9833 1.5647 6 8 3.7649 3.1065 0.2513 7 6 4.5894 0.9738 -0.8933 8 6 5.0291 -0.3312 -0.7593 9 6 5.8082 -0.9041 -1.7431 10 6 6.1438 -0.1678 -2.8804 11 6 6.9733 -0.7774 -3.9416 12 8 7.3649 -1.9221 -3.8246 13 7 7.2960 -0.0636 -5.0383 14 6 8.1184 -0.6675 -6.0896 15 6 8.3355 0.3476 -7.2136 16 6 9.1938 -0.2833 -8.3118 17 6 9.4082 0.7167 -9.4187 18 1 8.9751 1.7034 -9.3462 19 6 10.1571 0.3720 -10.5237 20 7 10.6849 -0.8294 -10.6117 21 14 10.4223 1.6113 -11.8960 22 1 9.7296 2.8805 -11.5574 23 1 11.8759 1.8689 -12.0564 24 1 9.8725 1.0700 -13.1648 25 6 5.6924 1.1465 -3.0117 26 6 4.9188 1.7093 -2.0178 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.4149 2.1090 -0.2173 33 1 4.7650 -0.9014 0.1191 34 1 6.1540 -1.9217 -1.6358 35 1 6.9838 0.8500 -5.1315 36 1 9.0821 -0.9610 -5.6735 37 1 7.6114 -1.5467 -6.4874 38 1 7.3715 0.6406 -7.6297 39 1 8.8422 1.2270 -6.8161 40 1 10.1578 -0.5767 -7.8959 41 1 8.6868 -1.1625 -8.7093 42 1 11.2121 -1.0718 -11.3890 43 1 5.9482 1.7214 -3.8894 44 1 4.5692 2.7263 -2.1180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264223493.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:04 Heat of formation + Delta-G solvation = -129.212746 kcal Electronic energy + Delta-G solvation = -25941.501300 eV Core-core repulsion = 21984.022638 eV Total energy + Delta-G solvation = -3957.478662 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.42838 -39.54596 -38.43376 -37.07841 -37.03397 -36.78064 -35.30900 -33.52533 -32.41406 -32.13148 -30.59575 -28.72167 -25.99862 -24.57463 -23.95375 -23.60200 -22.39006 -21.67508 -20.64248 -19.47136 -18.81739 -18.51659 -18.21967 -17.50481 -17.05425 -16.81838 -16.49704 -16.09950 -16.02939 -15.69781 -15.54095 -15.45791 -15.23600 -14.69210 -14.36374 -14.20640 -14.07131 -14.01608 -13.77855 -13.51916 -13.30645 -13.22142 -12.79575 -12.73751 -12.59292 -12.56826 -12.45601 -12.42686 -12.33283 -12.09179 -11.70825 -11.65729 -11.27829 -11.06737 -10.68608 -10.57010 -10.48137 -10.23012 -10.20001 -8.20567 -6.31816 -0.89972 -0.61896 0.13415 1.41334 1.41785 1.43103 1.54625 1.94951 2.00928 2.41482 2.46675 2.71181 3.13576 3.19611 3.46550 3.63668 3.75017 4.05284 4.09491 4.11978 4.17704 4.20705 4.30834 4.42053 4.50285 4.51807 4.67005 4.77783 4.82995 4.85485 4.91008 4.93000 5.08187 5.12265 5.15252 5.17210 5.30212 5.38411 5.50844 5.57340 5.69146 5.83260 6.08489 6.20749 6.37848 6.86001 7.01000 7.37956 8.91618 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.021595 B = 0.001757 C = 0.001718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.291435 B =15933.931274 C =16289.501082 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.098 3.902 3 N -1.105 6.105 4 S 2.719 3.281 5 O -0.980 6.980 6 O -0.980 6.980 7 C -0.660 4.660 8 C -0.029 4.029 9 C -0.092 4.092 10 C -0.088 4.088 11 C 0.545 3.455 12 O -0.575 6.575 13 N -0.704 5.704 14 C 0.128 3.872 15 C -0.103 4.103 16 C 0.022 3.978 17 C -0.539 4.539 18 H 0.067 0.933 19 C -0.005 4.005 20 N -0.935 5.935 21 Si 0.967 3.033 22 H -0.258 1.258 23 H -0.281 1.281 24 H -0.280 1.280 25 C -0.104 4.104 26 C -0.026 4.026 27 H 0.068 0.932 28 H 0.082 0.918 29 H 0.064 0.936 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.429 0.571 33 H 0.166 0.834 34 H 0.143 0.857 35 H 0.416 0.584 36 H 0.053 0.947 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.069 0.931 40 H -0.008 1.008 41 H -0.007 1.007 42 H 0.263 0.737 43 H 0.163 0.837 44 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.168 5.761 23.824 33.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.027 4.027 3 N -0.869 5.869 4 S 2.807 3.193 5 O -0.970 6.970 6 O -0.970 6.970 7 C -0.746 4.746 8 C -0.048 4.048 9 C -0.112 4.112 10 C -0.091 4.091 11 C 0.333 3.667 12 O -0.456 6.456 13 N -0.356 5.356 14 C 0.004 3.996 15 C -0.141 4.141 16 C -0.016 4.016 17 C -0.577 4.577 18 H 0.086 0.914 19 C -0.202 4.202 20 N -0.575 5.575 21 Si 0.792 3.208 22 H -0.181 1.181 23 H -0.207 1.207 24 H -0.206 1.206 25 C -0.123 4.123 26 C -0.045 4.045 27 H 0.087 0.913 28 H 0.101 0.899 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.099 0.901 32 H 0.267 0.733 33 H 0.183 0.817 34 H 0.161 0.839 35 H 0.255 0.745 36 H 0.072 0.928 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.088 0.912 40 H 0.011 0.989 41 H 0.012 0.988 42 H 0.072 0.928 43 H 0.180 0.820 44 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -22.358 5.158 24.527 33.587 hybrid contribution 0.545 0.246 -1.816 1.912 sum -21.814 5.403 22.710 31.950 Atomic orbital electron populations 1.21970 0.92717 1.03931 1.03175 1.21550 0.97726 0.80495 1.02920 1.55294 1.27296 1.16005 1.88327 1.01060 0.72746 0.72231 0.73221 1.93569 1.84597 1.74916 1.43932 1.93576 1.85880 1.30460 1.87117 1.31235 1.19461 1.06125 1.17807 1.21121 0.92778 0.92671 0.98181 1.21509 0.96525 1.00958 0.92224 1.20293 0.98064 0.95802 0.94942 1.18720 0.80144 0.85458 0.82423 1.90776 1.55823 1.19378 1.79601 1.45919 1.52589 1.17897 1.19176 1.21338 0.94110 0.96724 0.87405 1.21615 1.00781 0.97555 0.94114 1.18956 0.94019 0.95421 0.93159 1.21711 1.31908 1.00037 1.04090 0.91437 1.26025 0.95486 0.97306 1.01394 1.70117 1.35484 1.21274 1.30627 0.85367 0.77867 0.79196 0.78406 1.18141 1.20709 1.20627 1.21747 0.96695 0.93275 1.00567 1.21184 0.93085 1.00148 0.90123 0.91250 0.89925 0.91651 0.90588 0.90079 0.73302 0.81688 0.83943 0.74536 0.92813 0.92635 0.91047 0.91197 0.98924 0.98818 0.92844 0.81957 0.81261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.52 10.05 71.98 0.72 0.20 16 2 C 0.10 0.57 6.94 86.38 0.60 1.17 16 3 N -1.10 -8.15 6.00 -187.50 -1.12 -9.27 16 4 S 2.72 37.78 5.73 -56.49 -0.32 37.45 16 5 O -0.98 -19.23 16.74 -128.00 -2.14 -21.37 16 6 O -0.98 -18.65 17.27 -128.00 -2.21 -20.86 16 7 C -0.66 -9.51 5.95 22.33 0.13 -9.38 16 8 C -0.03 -0.44 9.50 22.23 0.21 -0.23 16 9 C -0.09 -1.81 9.60 22.53 0.22 -1.60 16 10 C -0.09 -1.87 5.87 -20.09 -0.12 -1.98 16 11 C 0.54 15.43 7.77 86.79 0.67 16.11 16 12 O -0.58 -21.13 16.35 -3.87 -0.06 -21.19 16 13 N -0.70 -18.32 5.51 -465.97 -2.57 -20.89 16 14 C 0.13 4.30 5.67 86.38 0.49 4.79 16 15 C -0.10 -3.76 5.27 30.59 0.16 -3.60 16 16 C 0.02 1.12 4.97 29.85 0.15 1.27 16 17 C -0.54 -29.48 9.11 25.60 0.23 -29.25 16 18 H 0.07 3.46 7.74 -2.91 -0.02 3.43 16 19 C 0.00 -0.25 5.46 84.65 0.46 0.21 16 20 N -0.93 -56.45 13.29 21.45 0.28 -56.17 16 21 Si 0.97 43.21 29.54 68.60 2.03 45.24 16 22 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 24 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 25 C -0.10 -1.59 9.54 22.53 0.21 -1.37 16 26 C -0.03 -0.36 9.50 22.23 0.21 -0.15 16 27 H 0.07 0.16 8.14 -2.39 -0.02 0.14 16 28 H 0.08 0.16 8.14 -2.38 -0.02 0.14 16 29 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 30 H 0.08 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.08 0.51 7.75 -2.39 -0.02 0.49 16 32 H 0.43 1.55 8.65 -96.75 -0.84 0.72 16 33 H 0.17 1.83 7.61 -2.91 -0.02 1.80 16 34 H 0.14 2.87 7.65 -2.91 -0.02 2.84 16 35 H 0.42 7.78 6.51 -92.71 -0.60 7.17 16 36 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 37 H 0.06 2.01 8.14 -2.38 -0.02 1.99 16 38 H 0.07 2.40 8.14 -2.38 -0.02 2.38 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H -0.01 -0.42 8.14 -2.38 -0.02 -0.44 16 41 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 42 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 43 H 0.16 1.61 6.41 -2.91 -0.02 1.60 16 44 H 0.17 1.53 7.60 -2.91 -0.02 1.51 16 Total: -1.00 -79.68 386.61 -2.17 -81.85 By element: Atomic # 1 Polarization: 9.43 SS G_CDS: -0.41 Total: 9.02 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: 4.36 Total: -23.81 kcal Atomic # 7 Polarization: -82.92 SS G_CDS: -3.41 Total: -86.33 kcal Atomic # 8 Polarization: -59.00 SS G_CDS: -4.42 Total: -63.42 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: 37.78 SS G_CDS: -0.32 Total: 37.45 kcal Total: -79.68 -2.17 -81.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264223493.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.367 kcal (2) G-P(sol) polarization free energy of solvation -79.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.044 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.169 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.846 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds