Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47612 * 2 1 4 4 C 1.50701 * 109.47007 * 239.99596 * 2 1 3 5 5 H 1.08008 * 120.00043 * 240.00920 * 4 2 1 6 6 C 1.37877 * 120.00072 * 59.99887 * 4 2 1 7 7 N 1.31512 * 119.99670 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99902 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47232 * 90.00709 * 8 6 4 10 10 H 1.48503 * 109.47082 * 210.00373 * 8 6 4 11 11 H 1.48493 * 109.47422 * 330.00539 * 8 6 4 12 12 N 1.46497 * 109.46826 * 119.99912 * 2 1 3 13 13 C 1.46506 * 120.00167 * 59.99596 * 12 2 1 14 14 C 1.34775 * 120.00168 * 239.99434 * 12 2 1 15 15 O 1.21287 * 119.99457 * 0.02562 * 14 12 2 16 16 C 1.50695 * 120.00409 * 179.97438 * 14 12 2 17 17 C 1.50701 * 109.47359 * 180.02562 * 16 14 12 18 18 C 1.38314 * 119.96183 * 269.72938 * 17 16 14 19 19 C 1.38269 * 120.14907 * 179.71842 * 18 17 16 20 20 C 1.38125 * 120.07232 * 0.55684 * 19 18 17 21 21 C 1.38893 * 119.92776 * 359.71954 * 20 19 18 22 22 N 1.39671 * 120.07827 * 179.97438 * 21 20 19 23 23 S 1.65598 * 119.99670 * 313.83099 * 22 21 20 24 24 C 1.81399 * 104.45209 * 298.76812 * 23 22 21 25 25 O 1.42099 * 104.27792 * 54.83756 * 23 22 21 26 26 O 1.42097 * 104.27779 * 182.69576 * 23 22 21 27 27 C 1.38080 * 119.96460 * 90.00140 * 17 16 14 28 28 H 1.08998 * 109.47057 * 300.00941 * 1 2 3 29 29 H 1.09002 * 109.46934 * 60.00173 * 1 2 3 30 30 H 1.08996 * 109.47612 * 179.97438 * 1 2 3 31 31 H 0.97006 * 119.99502 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47167 * 269.99736 * 13 12 2 33 33 H 1.08993 * 109.46992 * 30.00232 * 13 12 2 34 34 H 1.09001 * 109.46519 * 149.99972 * 13 12 2 35 35 H 1.09004 * 109.47076 * 60.00307 * 16 14 12 36 36 H 1.08999 * 109.47383 * 300.00505 * 16 14 12 37 37 H 1.08004 * 119.92592 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.96248 * 180.27284 * 19 18 17 39 39 H 1.08002 * 120.03835 * 179.69653 * 20 19 18 40 40 H 0.96997 * 120.00087 * 133.83168 * 22 21 20 41 41 H 1.09003 * 109.47400 * 65.01529 * 24 23 22 42 42 H 1.09002 * 109.47507 * 185.01631 * 24 23 22 43 43 H 1.08999 * 109.46889 * 305.01634 * 24 23 22 44 44 H 1.08004 * 120.03476 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5888 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.3447 -2.1619 -4.4123 10 1 2.4873 -0.1406 -5.1120 11 1 3.6307 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 1.6642 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0833 15 8 3.0859 1.1256 1.8915 16 6 3.2950 -0.7458 3.3141 17 6 4.1319 0.2015 4.1346 18 6 5.4950 0.2856 3.9158 19 6 6.2657 1.1576 4.6625 20 6 5.6779 1.9397 5.6376 21 6 4.3102 1.8536 5.8638 22 7 3.7127 2.6425 6.8493 23 16 4.4049 2.7588 8.3492 24 6 4.3942 1.0601 8.9856 25 8 5.7351 3.1854 8.0892 26 8 3.5054 3.5737 9.0881 27 6 3.5379 0.9804 5.1078 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7095 1.1615 -3.4845 32 1 0.7374 -2.1443 1.9995 33 1 1.5293 -2.5969 0.4710 34 1 2.4627 -2.5818 1.9865 35 1 3.9003 -1.6025 3.0178 36 1 2.4470 -1.0880 3.9073 37 1 5.9579 -0.3283 3.1573 38 1 7.3291 1.2241 4.4861 39 1 6.2812 2.6171 6.2237 40 1 2.8923 3.1222 6.6552 41 1 5.0436 0.4374 8.3703 42 1 4.7545 1.0552 10.0144 43 1 3.3781 0.6669 8.9547 44 1 2.4741 0.9114 5.2808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264440265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -74.595533 kcal Electronic energy + Delta-G solvation = -27270.200645 eV Core-core repulsion = 23315.090364 eV Total energy + Delta-G solvation = -3955.110282 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.95823 -38.78368 -37.45596 -36.35317 -35.61088 -35.08788 -33.01144 -32.27921 -29.88542 -29.77903 -29.21097 -27.22796 -26.05312 -25.23573 -22.63240 -22.36481 -20.91031 -19.64054 -18.41424 -18.10136 -17.41837 -16.64755 -16.64266 -16.28735 -16.17377 -15.61793 -15.49396 -15.20911 -14.43026 -14.29813 -13.91419 -13.71958 -13.62045 -13.25623 -13.15317 -12.91299 -12.63931 -12.52166 -12.47837 -12.33104 -12.27260 -11.86057 -11.63200 -11.53760 -11.51324 -11.30528 -11.21307 -11.06671 -10.83804 -10.70509 -10.51631 -10.28452 -10.19208 -9.24033 -9.08187 -8.72237 -8.45701 -8.38642 -7.61192 -6.09612 -4.17826 -0.18385 1.27835 1.35567 2.24916 3.23968 3.31014 3.32973 3.36792 3.37796 3.58366 3.82246 4.06036 4.33846 4.38140 4.56910 4.73879 4.81907 4.91422 5.17966 5.21043 5.26117 5.26560 5.31285 5.40626 5.57328 5.64545 5.72949 5.89547 5.99126 6.04442 6.26370 6.32838 6.47851 6.59694 6.65409 6.72855 6.80528 7.01507 7.04558 7.39906 7.51698 7.69366 7.99430 8.17859 8.50715 8.81023 9.04052 9.48837 10.95692 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.002315 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.289080 B =12090.438572 C =12289.706437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.258 3.742 3 H 0.063 0.937 4 C -0.526 4.526 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.274 1.274 12 N -0.594 5.594 13 C 0.083 3.917 14 C 0.504 3.496 15 O -0.544 6.544 16 C -0.106 4.106 17 C -0.037 4.037 18 C -0.109 4.109 19 C -0.097 4.097 20 C -0.157 4.157 21 C 0.133 3.867 22 N -1.056 6.056 23 S 2.610 3.390 24 C -0.668 4.668 25 O -0.950 6.950 26 O -0.957 6.957 27 C -0.116 4.116 28 H 0.010 0.990 29 H 0.093 0.907 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.042 0.958 33 H 0.080 0.920 34 H 0.053 0.947 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.124 0.876 38 H 0.128 0.872 39 H 0.154 0.846 40 H 0.426 0.574 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.131 0.869 44 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.781 -4.894 21.428 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.158 3.842 3 H 0.081 0.919 4 C -0.565 4.565 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.199 1.199 12 N -0.326 5.326 13 C -0.061 4.061 14 C 0.290 3.710 15 O -0.422 6.422 16 C -0.146 4.146 17 C -0.039 4.039 18 C -0.128 4.128 19 C -0.116 4.116 20 C -0.178 4.178 21 C 0.037 3.963 22 N -0.807 5.807 23 S 2.704 3.296 24 C -0.819 4.819 25 O -0.940 6.940 26 O -0.947 6.947 27 C -0.138 4.138 28 H 0.029 0.971 29 H 0.111 0.889 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.142 0.858 38 H 0.146 0.854 39 H 0.171 0.829 40 H 0.263 0.737 41 H 0.150 0.850 42 H 0.149 0.851 43 H 0.150 0.850 44 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 6.278 -3.413 21.667 22.815 hybrid contribution -0.420 -1.119 -1.183 1.681 sum 5.858 -4.532 20.484 21.782 Atomic orbital electron populations 1.22081 0.98263 0.99342 1.00753 1.18923 0.90799 0.94535 0.79930 0.91941 1.21314 1.31871 1.13004 0.90323 0.92265 1.24899 0.94956 0.94963 0.98993 1.69881 1.36350 1.22518 1.23779 0.86496 0.79164 0.79291 0.82428 1.20626 1.21094 1.19938 1.48253 1.49111 1.11616 1.23614 1.21612 0.98728 0.83386 1.02420 1.20210 0.79491 0.87246 0.84068 1.90687 1.57941 1.16950 1.76606 1.20797 1.00179 0.98157 0.95491 1.19259 0.93647 0.96472 0.94494 1.21118 0.93313 0.99335 0.99035 1.21000 1.00075 0.95452 0.95033 1.21829 0.93920 1.01640 1.00371 1.17282 0.92131 0.93588 0.93251 1.53222 1.40481 1.59760 1.27269 1.05006 0.74389 0.77236 0.72955 1.30458 1.12094 1.26045 1.13266 1.93583 1.37953 1.79441 1.82979 1.93629 1.65167 1.65137 1.70784 1.20952 0.99796 0.95704 0.97313 0.97097 0.88883 0.95193 0.92664 0.93924 0.90091 0.92792 0.88224 0.88555 0.85758 0.85379 0.82880 0.73651 0.84958 0.85129 0.85033 0.85643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 2 C 0.26 6.46 2.64 -69.08 -0.18 6.28 16 3 H 0.06 1.84 6.90 -51.93 -0.36 1.48 16 4 C -0.53 -13.94 7.99 -34.44 -0.28 -14.22 16 5 H 0.06 1.53 7.33 -52.48 -0.38 1.15 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.92 11.32 55.43 0.63 -24.30 16 8 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 N -0.59 -12.06 2.75 -175.26 -0.48 -12.54 16 13 C 0.08 1.27 9.24 59.85 0.55 1.83 16 14 C 0.50 9.78 7.67 -10.99 -0.08 9.70 16 15 O -0.54 -12.99 15.36 5.55 0.09 -12.91 16 16 C -0.11 -1.40 4.38 -29.04 -0.13 -1.53 16 17 C -0.04 -0.50 4.37 -104.65 -0.46 -0.95 16 18 C -0.11 -1.38 9.70 -39.54 -0.38 -1.76 16 19 C -0.10 -1.12 10.04 -39.61 -0.40 -1.52 16 20 C -0.16 -1.86 9.24 -39.38 -0.36 -2.22 16 21 C 0.13 1.51 6.02 -83.79 -0.50 1.00 16 22 N -1.06 -9.63 5.67 32.41 0.18 -9.45 16 23 S 2.61 21.93 6.00 -107.50 -0.64 21.28 16 24 C -0.67 -3.26 10.74 101.05 1.09 -2.17 16 25 O -0.95 -10.85 15.18 -57.54 -0.87 -11.73 16 26 O -0.96 -10.90 18.08 -57.54 -1.04 -11.94 16 27 C -0.12 -1.41 9.62 -39.38 -0.38 -1.79 16 28 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 2.42 6.07 -51.93 -0.32 2.10 16 30 H 0.03 0.64 7.67 -51.93 -0.40 0.24 16 31 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.08 1.36 7.02 -51.93 -0.36 0.99 16 34 H 0.05 0.64 6.44 -51.93 -0.33 0.31 16 35 H 0.10 1.10 7.34 -51.93 -0.38 0.72 16 36 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 37 H 0.12 1.43 8.06 -52.48 -0.42 1.01 16 38 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 39 H 0.15 1.80 5.64 -52.49 -0.30 1.50 16 40 H 0.43 3.38 8.92 -34.47 -0.31 3.07 16 41 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 42 H 0.13 0.41 8.14 -51.92 -0.42 -0.01 16 43 H 0.13 0.47 8.14 -51.92 -0.42 0.05 16 44 H 0.13 1.33 8.06 -52.48 -0.42 0.90 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -36.45 375.70 -8.85 -45.31 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.08 Total: 3.70 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -1.28 Total: -8.81 kcal Atomic # 7 Polarization: -46.61 SS G_CDS: 0.33 Total: -46.28 kcal Atomic # 8 Polarization: -34.75 SS G_CDS: -1.83 Total: -36.58 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 21.93 SS G_CDS: -0.64 Total: 21.28 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.45 -8.85 -45.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264440265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.290 kcal (2) G-P(sol) polarization free energy of solvation -36.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.306 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds