Wall clock time and date at job start Sat Apr 11 2020 05:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08996 * 109.47612 * 2 1 4 4 C 1.50701 * 109.47007 * 239.99596 * 2 1 3 5 5 H 1.08008 * 120.00043 * 240.00920 * 4 2 1 6 6 C 1.37877 * 120.00072 * 59.99887 * 4 2 1 7 7 N 1.31512 * 119.99670 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99902 * 179.97438 * 6 4 2 9 9 H 1.48507 * 109.47232 * 90.00709 * 8 6 4 10 10 H 1.48503 * 109.47082 * 210.00373 * 8 6 4 11 11 H 1.48493 * 109.47422 * 330.00539 * 8 6 4 12 12 N 1.46497 * 109.46826 * 119.99912 * 2 1 3 13 13 C 1.46506 * 120.00167 * 59.99596 * 12 2 1 14 14 C 1.34775 * 120.00168 * 239.99434 * 12 2 1 15 15 O 1.21287 * 119.99457 * 0.02562 * 14 12 2 16 16 C 1.50695 * 120.00409 * 179.97438 * 14 12 2 17 17 C 1.50701 * 109.47359 * 180.02562 * 16 14 12 18 18 C 1.38314 * 119.96183 * 269.72938 * 17 16 14 19 19 C 1.38269 * 120.14907 * 179.71842 * 18 17 16 20 20 C 1.38125 * 120.07232 * 0.55684 * 19 18 17 21 21 C 1.38893 * 119.92776 * 359.71954 * 20 19 18 22 22 N 1.39671 * 120.07827 * 179.97438 * 21 20 19 23 23 S 1.65598 * 119.99670 * 313.83099 * 22 21 20 24 24 C 1.81399 * 104.45209 * 298.76812 * 23 22 21 25 25 O 1.42099 * 104.27792 * 54.83756 * 23 22 21 26 26 O 1.42097 * 104.27779 * 182.69576 * 23 22 21 27 27 C 1.38080 * 119.96460 * 90.00140 * 17 16 14 28 28 H 1.08998 * 109.47057 * 300.00941 * 1 2 3 29 29 H 1.09002 * 109.46934 * 60.00173 * 1 2 3 30 30 H 1.08996 * 109.47612 * 179.97438 * 1 2 3 31 31 H 0.97006 * 119.99502 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47167 * 269.99736 * 13 12 2 33 33 H 1.08993 * 109.46992 * 30.00232 * 13 12 2 34 34 H 1.09001 * 109.46519 * 149.99972 * 13 12 2 35 35 H 1.09004 * 109.47076 * 60.00307 * 16 14 12 36 36 H 1.08999 * 109.47383 * 300.00505 * 16 14 12 37 37 H 1.08004 * 119.92592 * 359.97438 * 18 17 16 38 38 H 1.08000 * 119.96248 * 180.27284 * 19 18 17 39 39 H 1.08002 * 120.03835 * 179.69653 * 20 19 18 40 40 H 0.96997 * 120.00087 * 133.83168 * 22 21 20 41 41 H 1.09003 * 109.47400 * 65.01529 * 24 23 22 42 42 H 1.09002 * 109.47507 * 185.01631 * 24 23 22 43 43 H 1.08999 * 109.46889 * 305.01634 * 24 23 22 44 44 H 1.08004 * 120.03476 * 359.97438 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6532 -1.5888 -1.1313 6 6 1.6992 -0.2396 -2.4827 7 7 0.9435 0.8300 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 1.3447 -2.1619 -4.4123 10 1 2.4873 -0.1406 -5.1120 11 1 3.6307 -1.7569 -3.7118 12 7 2.0183 -0.6906 1.1962 13 6 1.6642 -2.0932 1.4281 14 6 2.7932 -0.0357 2.0833 15 8 3.0859 1.1256 1.8915 16 6 3.2950 -0.7458 3.3141 17 6 4.1319 0.2015 4.1346 18 6 5.4950 0.2856 3.9158 19 6 6.2657 1.1576 4.6625 20 6 5.6779 1.9397 5.6376 21 6 4.3102 1.8536 5.8638 22 7 3.7127 2.6425 6.8493 23 16 4.4049 2.7588 8.3492 24 6 4.3942 1.0601 8.9856 25 8 5.7351 3.1854 8.0892 26 8 3.5054 3.5737 9.0881 27 6 3.5379 0.9804 5.1078 28 1 -0.3633 0.5140 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 0.7095 1.1615 -3.4845 32 1 0.7374 -2.1443 1.9995 33 1 1.5293 -2.5969 0.4710 34 1 2.4627 -2.5818 1.9865 35 1 3.9003 -1.6025 3.0178 36 1 2.4470 -1.0880 3.9073 37 1 5.9579 -0.3283 3.1573 38 1 7.3291 1.2241 4.4861 39 1 6.2812 2.6171 6.2237 40 1 2.8923 3.1222 6.6552 41 1 5.0436 0.4374 8.3703 42 1 4.7545 1.0552 10.0144 43 1 3.3781 0.6669 8.9547 44 1 2.4741 0.9114 5.2808 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264440265.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:11 Heat of formation + Delta-G solvation = -101.196107 kcal Electronic energy + Delta-G solvation = -27271.354133 eV Core-core repulsion = 23315.090364 eV Total energy + Delta-G solvation = -3956.263769 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.08588 -40.06445 -38.24537 -37.17279 -37.08278 -36.13627 -34.80082 -33.41789 -31.42291 -30.32513 -30.18691 -28.34324 -27.42767 -27.26767 -23.70182 -23.43104 -22.30893 -20.45562 -19.83562 -18.86798 -18.49444 -18.29631 -17.74611 -17.33041 -17.19151 -16.99386 -16.55137 -16.37271 -15.95928 -15.69203 -14.82116 -14.72055 -14.33498 -14.14434 -14.07702 -13.99911 -13.91967 -13.88479 -13.50003 -13.32569 -13.25394 -13.15087 -12.98788 -12.96064 -12.76939 -12.66362 -12.58954 -12.28662 -12.21199 -12.15821 -12.10935 -11.93196 -11.34574 -11.16188 -10.66263 -10.45924 -9.71154 -9.29456 -9.24854 -8.13237 -6.29705 -0.81974 0.35044 0.45153 1.41626 1.43580 1.53091 1.56339 1.90903 2.34397 2.50290 2.75284 2.86235 3.14894 3.19722 3.73615 3.90091 3.99535 4.03474 4.10524 4.19504 4.33418 4.41023 4.46714 4.59140 4.67870 4.77537 4.78998 4.84000 4.91762 4.92081 5.05832 5.09822 5.11537 5.16141 5.39049 5.50633 5.57505 5.64209 5.68606 5.70665 5.86314 6.07702 6.16325 6.19379 6.79621 6.92241 7.36129 7.56758 8.90918 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.023900 B = 0.002315 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.289080 B =12090.438572 C =12289.706437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.262 3.738 3 H 0.005 0.995 4 C -0.536 4.536 5 H 0.063 0.937 6 C 0.013 3.987 7 N -0.920 5.920 8 Si 0.964 3.036 9 H -0.267 1.267 10 H -0.289 1.289 11 H -0.269 1.269 12 N -0.603 5.603 13 C 0.077 3.923 14 C 0.494 3.506 15 O -0.601 6.601 16 C -0.090 4.090 17 C -0.055 4.055 18 C -0.123 4.123 19 C -0.100 4.100 20 C -0.168 4.168 21 C 0.136 3.864 22 N -1.056 6.056 23 S 2.615 3.385 24 C -0.646 4.646 25 O -0.986 6.986 26 O -0.991 6.991 27 C -0.124 4.124 28 H 0.019 0.981 29 H 0.064 0.936 30 H 0.047 0.953 31 H 0.263 0.737 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.096 0.904 35 H 0.128 0.872 36 H 0.131 0.869 37 H 0.131 0.869 38 H 0.147 0.853 39 H 0.152 0.848 40 H 0.430 0.570 41 H 0.143 0.857 42 H 0.155 0.845 43 H 0.152 0.848 44 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.063 -7.924 22.876 24.957 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.160 3.840 3 H 0.023 0.977 4 C -0.574 4.574 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.559 5.559 8 Si 0.789 3.211 9 H -0.193 1.193 10 H -0.215 1.215 11 H -0.193 1.193 12 N -0.334 5.334 13 C -0.065 4.065 14 C 0.283 3.717 15 O -0.483 6.483 16 C -0.129 4.129 17 C -0.056 4.056 18 C -0.142 4.142 19 C -0.119 4.119 20 C -0.189 4.189 21 C 0.040 3.960 22 N -0.806 5.806 23 S 2.713 3.287 24 C -0.800 4.800 25 O -0.977 6.977 26 O -0.982 6.982 27 C -0.146 4.146 28 H 0.038 0.962 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.115 0.885 35 H 0.146 0.854 36 H 0.149 0.851 37 H 0.149 0.851 38 H 0.165 0.835 39 H 0.169 0.831 40 H 0.268 0.732 41 H 0.161 0.839 42 H 0.173 0.827 43 H 0.171 0.829 44 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.551 -6.452 23.126 24.887 hybrid contribution -0.493 -0.163 -1.549 1.634 sum 6.058 -6.616 21.577 23.367 Atomic orbital electron populations 1.21861 0.97370 1.00041 0.99742 1.18461 0.91430 0.92129 0.82000 0.97699 1.21613 1.31689 1.12996 0.91139 0.91857 1.25754 0.95166 0.95638 1.02120 1.70036 1.37553 1.23972 1.24315 0.85467 0.78932 0.78211 0.78474 1.19257 1.21460 1.19349 1.48255 1.49271 1.13509 1.22370 1.21894 1.01547 0.80425 1.02624 1.21325 0.78249 0.86828 0.85286 1.90659 1.59754 1.19746 1.78090 1.20775 1.01640 0.98032 0.92472 1.19416 0.93985 0.97226 0.95017 1.21319 0.93542 0.99908 0.99458 1.21253 1.01133 0.94911 0.94564 1.21960 0.94379 1.01873 1.00680 1.17316 0.92003 0.93372 0.93323 1.53170 1.40449 1.59674 1.27340 1.04709 0.72967 0.78735 0.72323 1.30271 1.14016 1.21322 1.14434 1.93532 1.39380 1.81385 1.83357 1.93585 1.65769 1.67638 1.71161 1.21150 1.00566 0.95607 0.97260 0.96221 0.91753 0.93410 0.92771 0.91555 0.91657 0.88520 0.85419 0.85101 0.85059 0.83510 0.83088 0.73230 0.83852 0.82729 0.82919 0.84286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.26 8.97 71.98 0.65 -5.62 16 2 C 0.26 13.40 2.64 44.25 0.12 13.52 16 3 H 0.01 0.31 6.90 -2.39 -0.02 0.30 16 4 C -0.54 -28.61 7.99 25.60 0.20 -28.40 16 5 H 0.06 3.24 7.33 -2.91 -0.02 3.22 16 6 C 0.01 0.68 5.30 84.65 0.45 1.13 16 7 N -0.92 -53.13 11.32 21.45 0.24 -52.89 16 8 Si 0.96 42.60 29.54 68.60 2.03 44.62 16 9 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 10 H -0.29 -12.82 7.11 99.48 0.71 -12.12 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 12 N -0.60 -23.91 2.75 -826.80 -2.28 -26.18 16 13 C 0.08 2.14 9.24 127.77 1.18 3.32 16 14 C 0.49 18.79 7.67 87.66 0.67 19.46 16 15 O -0.60 -29.51 15.36 -3.05 -0.05 -29.56 16 16 C -0.09 -2.09 4.38 29.10 0.13 -1.97 16 17 C -0.06 -1.36 4.37 -19.88 -0.09 -1.45 16 18 C -0.12 -2.95 9.70 22.30 0.22 -2.74 16 19 C -0.10 -2.22 10.04 22.25 0.22 -2.00 16 20 C -0.17 -3.87 9.24 22.40 0.21 -3.67 16 21 C 0.14 2.95 6.02 38.22 0.23 3.18 16 22 N -1.06 -18.54 5.67 -51.37 -0.29 -18.83 16 23 S 2.61 41.81 6.00 -56.49 -0.34 41.48 16 24 C -0.65 -4.23 10.74 113.37 1.22 -3.02 16 25 O -0.99 -22.52 15.18 -127.65 -1.94 -24.46 16 26 O -0.99 -22.33 18.08 -127.65 -2.31 -24.64 16 27 C -0.12 -2.81 9.62 22.40 0.22 -2.60 16 28 H 0.02 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 3.44 6.07 -2.39 -0.01 3.43 16 30 H 0.05 2.04 7.67 -2.39 -0.02 2.02 16 31 H 0.26 14.44 8.31 -92.70 -0.77 13.67 16 32 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 33 H 0.06 2.03 7.02 -2.39 -0.02 2.02 16 34 H 0.10 1.84 6.44 -2.39 -0.02 1.83 16 35 H 0.13 2.27 7.34 -2.39 -0.02 2.25 16 36 H 0.13 2.15 8.05 -2.39 -0.02 2.13 16 37 H 0.13 2.84 8.06 -2.91 -0.02 2.82 16 38 H 0.15 2.55 8.06 -2.91 -0.02 2.53 16 39 H 0.15 3.54 5.64 -2.91 -0.02 3.52 16 40 H 0.43 6.72 8.92 -96.75 -0.86 5.86 16 41 H 0.14 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.15 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.14 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -83.43 375.70 0.85 -82.58 By element: Atomic # 1 Polarization: 18.57 SS G_CDS: 0.16 Total: 18.73 kcal Atomic # 6 Polarization: -16.47 SS G_CDS: 5.62 Total: -10.85 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -2.32 Total: -97.90 kcal Atomic # 8 Polarization: -74.37 SS G_CDS: -4.29 Total: -78.66 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 2.03 Total: 44.62 kcal Atomic # 16 Polarization: 41.81 SS G_CDS: -0.34 Total: 41.48 kcal Total: -83.43 0.85 -82.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264440265.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.616 kcal (2) G-P(sol) polarization free energy of solvation -83.434 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds