Wall clock time and date at job start Sat Apr 11 2020 05:58:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09004 * 109.47271 * 2 1 4 4 C 1.50701 * 109.47009 * 240.00358 * 2 1 3 5 5 H 1.08000 * 120.00132 * 240.00060 * 4 2 1 6 6 C 1.37883 * 120.00163 * 60.00143 * 4 2 1 7 7 N 1.31515 * 119.99353 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00283 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.46855 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47193 * 119.99623 * 8 6 4 11 11 H 1.48497 * 109.47200 * 239.99836 * 8 6 4 12 12 S 1.81395 * 109.47299 * 120.00531 * 2 1 3 13 13 C 1.76196 * 102.99980 * 286.15006 * 12 2 1 14 14 C 1.38773 * 120.10398 * 1.59366 * 13 12 2 15 15 C 1.38212 * 119.98708 * 180.27867 * 14 13 12 16 16 C 1.38281 * 120.20029 * 359.71615 * 15 14 13 17 17 C 1.38267 * 120.20466 * 0.02562 * 16 15 14 18 18 C 1.38631 * 120.00940 * 359.97438 * 17 16 15 19 19 N 1.40189 * 120.09968 * 180.02562 * 18 17 16 20 20 C 1.34782 * 120.00179 * 335.68861 * 19 18 17 21 21 O 1.21599 * 119.99330 * 354.59604 * 20 19 18 22 22 N 1.34774 * 120.00360 * 174.59833 * 20 19 18 23 23 C 1.46499 * 119.99775 * 180.02562 * 22 20 19 24 24 C 1.52999 * 109.46938 * 154.72188 * 23 22 20 25 25 O 1.42906 * 109.47085 * 64.99781 * 24 23 22 26 26 C 1.52994 * 109.47059 * 274.72104 * 23 22 20 27 27 O 1.42901 * 109.47445 * 295.00030 * 26 23 22 28 28 H 1.09008 * 109.47117 * 304.46406 * 1 2 3 29 29 H 1.08996 * 109.47388 * 64.46489 * 1 2 3 30 30 H 1.09001 * 109.47285 * 184.46920 * 1 2 3 31 31 H 0.97007 * 119.99664 * 180.02562 * 7 6 4 32 32 H 1.08003 * 120.00873 * 359.97324 * 14 13 12 33 33 H 1.08006 * 119.89835 * 179.74896 * 15 14 13 34 34 H 1.07994 * 119.90182 * 180.02562 * 16 15 14 35 35 H 1.08004 * 119.99466 * 179.97438 * 17 16 15 36 36 H 0.96999 * 120.00412 * 155.68935 * 19 18 17 37 37 H 0.96996 * 119.99509 * 359.72147 * 22 20 19 38 38 H 1.08997 * 109.47154 * 34.72859 * 23 22 20 39 39 H 1.08996 * 109.47526 * 184.99883 * 24 23 22 40 40 H 1.09005 * 109.47427 * 304.99807 * 24 23 22 41 41 H 0.96702 * 114.00173 * 179.97438 * 25 24 23 42 42 H 1.08999 * 109.47299 * 55.00212 * 26 23 22 43 43 H 1.09008 * 109.46976 * 175.00231 * 26 23 22 44 44 H 0.96700 * 113.99877 * 180.02562 * 27 26 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7103 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9427 0.8298 -2.6033 8 14 2.3223 -1.1192 -4.0081 9 1 3.1472 -2.2861 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1471 -0.1854 -4.8162 12 16 2.1346 -0.8552 1.4810 13 6 1.8165 0.3063 2.7671 14 6 1.2000 1.5152 2.4764 15 6 0.9569 2.4270 3.4862 16 6 1.3209 2.1365 4.7883 17 6 1.9307 0.9323 5.0879 18 6 2.1787 0.0114 4.0817 19 7 2.7965 -1.2103 4.3834 20 6 3.5760 -1.3193 5.4775 21 8 3.8232 -0.3355 6.1482 22 7 4.0815 -2.5184 5.8282 23 6 4.9283 -2.6368 7.0177 24 6 4.8538 -4.0669 7.5565 25 8 5.4177 -4.9663 6.5998 26 6 6.3756 -2.3057 6.6484 27 8 6.8699 -3.2858 5.7335 28 1 -0.3634 0.5816 0.8473 29 1 -0.3634 0.4430 -0.9272 30 1 -0.3634 -1.0245 0.0801 31 1 0.7080 1.1611 -3.4843 32 1 0.9147 1.7455 1.4606 33 1 0.4806 3.3691 3.2577 34 1 1.1282 2.8523 5.5736 35 1 2.2140 0.7090 6.1059 36 1 2.6630 -1.9773 3.8048 37 1 3.8809 -3.3037 5.2954 38 1 4.5802 -1.9421 7.7821 39 1 5.4119 -4.1329 8.4903 40 1 3.8123 -4.3337 7.7361 41 1 5.4044 -5.8930 6.8757 42 1 6.4156 -1.3210 6.1828 43 1 6.9898 -2.3070 7.5490 44 1 7.7845 -3.1387 5.4558 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000266460534.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:31 Heat of formation + Delta-G solvation = -119.385262 kcal Electronic energy + Delta-G solvation = -27139.322763 eV Core-core repulsion = 23182.270252 eV Total energy + Delta-G solvation = -3957.052510 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.80078 -39.86205 -38.59010 -36.81444 -36.28807 -35.72428 -35.34354 -32.80193 -31.62153 -31.46734 -29.71426 -27.39475 -26.63520 -24.44742 -23.87861 -23.24528 -22.14938 -21.57419 -19.79285 -19.18945 -18.56789 -18.22588 -17.85083 -17.65104 -17.05791 -16.88426 -16.67638 -16.07676 -15.97941 -15.42653 -15.31342 -15.02124 -15.00781 -14.68038 -14.34807 -14.30857 -14.15171 -13.68898 -13.35905 -13.21875 -13.01080 -12.98243 -12.89397 -12.72633 -12.44285 -12.20984 -12.00739 -11.85203 -11.55835 -11.35111 -11.18109 -10.85941 -10.84193 -10.67184 -10.53207 -10.48012 -10.16451 -9.20970 -8.24692 -8.12321 -6.41493 0.28688 0.41491 0.83962 1.40078 1.42274 1.51098 1.54680 1.86909 1.97876 2.37874 2.85360 3.03990 3.05019 3.43146 3.46338 3.87210 3.93667 4.18003 4.31442 4.40140 4.45144 4.50809 4.53105 4.55495 4.56293 4.60096 4.70844 4.82050 4.88167 4.88631 4.95270 5.16574 5.31500 5.33721 5.43140 5.52056 5.57709 5.62452 5.76242 5.86999 6.02864 6.08066 6.61188 6.83257 6.96495 7.06653 7.26104 7.36072 8.80769 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.011767 B = 0.003065 C = 0.002549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2378.965224 B = 9132.602433 C =10983.397570 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.099 3.901 3 H 0.024 0.976 4 C -0.533 4.533 5 H 0.058 0.942 6 C 0.027 3.973 7 N -0.908 5.908 8 Si 0.968 3.032 9 H -0.269 1.269 10 H -0.273 1.273 11 H -0.277 1.277 12 S -0.175 6.175 13 C -0.120 4.120 14 C -0.130 4.130 15 C -0.122 4.122 16 C -0.105 4.105 17 C -0.127 4.127 18 C 0.167 3.833 19 N -0.673 5.673 20 C 0.704 3.296 21 O -0.605 6.605 22 N -0.714 5.714 23 C 0.157 3.843 24 C 0.078 3.922 25 O -0.564 6.564 26 C 0.067 3.933 27 O -0.557 6.557 28 H 0.038 0.962 29 H 0.074 0.926 30 H 0.037 0.963 31 H 0.269 0.731 32 H 0.120 0.880 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.149 0.851 36 H 0.413 0.587 37 H 0.410 0.590 38 H 0.113 0.887 39 H 0.081 0.919 40 H 0.060 0.940 41 H 0.388 0.612 42 H 0.022 0.978 43 H 0.073 0.927 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.658 -7.213 21.724 23.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.029 4.029 3 H 0.042 0.958 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.175 4.175 7 N -0.546 5.546 8 Si 0.792 3.208 9 H -0.193 1.193 10 H -0.199 1.199 11 H -0.202 1.202 12 S 0.071 5.929 13 C -0.235 4.235 14 C -0.155 4.155 15 C -0.142 4.142 16 C -0.127 4.127 17 C -0.149 4.149 18 C 0.065 3.935 19 N -0.319 5.319 20 C 0.405 3.595 21 O -0.486 6.486 22 N -0.369 5.369 23 C 0.052 3.948 24 C -0.001 4.001 25 O -0.370 6.370 26 C -0.012 4.012 27 O -0.362 6.362 28 H 0.057 0.943 29 H 0.093 0.907 30 H 0.056 0.944 31 H 0.078 0.922 32 H 0.138 0.862 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.167 0.833 36 H 0.250 0.750 37 H 0.245 0.755 38 H 0.131 0.869 39 H 0.099 0.901 40 H 0.078 0.922 41 H 0.236 0.764 42 H 0.040 0.960 43 H 0.091 0.909 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges 5.849 -7.172 21.957 23.828 hybrid contribution 0.020 0.149 -1.574 1.581 sum 5.869 -7.023 20.384 22.344 Atomic orbital electron populations 1.21972 0.95627 0.99909 1.01422 1.20833 0.96107 0.96017 0.89946 0.95802 1.20945 1.32814 1.13344 0.90071 0.92337 1.25666 0.94698 0.95578 1.01519 1.69970 1.36408 1.23440 1.24810 0.85354 0.78341 0.78561 0.78542 1.19342 1.19878 1.20219 1.84726 1.78999 1.27316 1.01856 1.21684 1.07034 0.99701 0.95098 1.21326 1.00206 0.93317 1.00622 1.21307 1.00748 0.99625 0.92539 1.21354 0.97737 0.96627 0.96943 1.21452 0.99849 0.94340 0.99293 1.17160 0.97686 0.87554 0.91119 1.42607 1.49618 1.12483 1.27168 1.16016 0.78322 0.84479 0.80728 1.90829 1.65281 1.36939 1.55519 1.45003 1.52942 1.07992 1.30947 1.21382 0.88443 0.98243 0.86726 1.22306 0.98367 0.87386 0.91993 1.86744 1.84179 1.20960 1.45132 1.22490 0.94812 0.90426 0.93513 1.86695 1.33557 1.50871 1.65070 0.94342 0.90706 0.94369 0.92184 0.86224 0.83439 0.82508 0.83322 0.75033 0.75457 0.86883 0.90070 0.92168 0.76367 0.95981 0.90873 0.77215 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 8.63 71.98 0.62 -5.60 16 2 C 0.10 5.02 1.97 29.85 0.06 5.08 16 3 H 0.02 1.33 6.96 -2.39 -0.02 1.31 16 4 C -0.53 -29.24 8.58 25.60 0.22 -29.02 16 5 H 0.06 3.24 7.71 -2.91 -0.02 3.22 16 6 C 0.03 1.46 5.29 84.66 0.45 1.91 16 7 N -0.91 -50.23 11.29 21.45 0.24 -49.98 16 8 Si 0.97 42.64 29.54 68.60 2.03 44.67 16 9 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 10 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 11 H -0.28 -11.92 7.11 99.48 0.71 -11.21 16 12 S -0.18 -7.68 19.91 -56.49 -1.12 -8.80 16 13 C -0.12 -4.76 6.12 22.70 0.14 -4.63 16 14 C -0.13 -4.98 8.28 22.39 0.19 -4.80 16 15 C -0.12 -3.74 10.04 22.27 0.22 -3.52 16 16 C -0.11 -2.98 10.04 22.29 0.22 -2.75 16 17 C -0.13 -4.13 8.73 22.37 0.20 -3.94 16 18 C 0.17 5.97 6.45 38.20 0.25 6.22 16 19 N -0.67 -21.36 5.19 -316.65 -1.64 -23.00 16 20 C 0.70 20.94 8.35 179.05 1.49 22.43 16 21 O -0.61 -20.65 13.14 -4.03 -0.05 -20.70 16 22 N -0.71 -16.18 5.01 -457.82 -2.29 -18.47 16 23 C 0.16 2.81 2.86 44.99 0.13 2.94 16 24 C 0.08 0.91 6.79 71.98 0.49 1.40 16 25 O -0.56 -8.09 10.95 -126.65 -1.39 -9.48 16 26 C 0.07 1.26 6.85 71.98 0.49 1.75 16 27 O -0.56 -11.15 11.17 -126.65 -1.41 -12.57 16 28 H 0.04 1.66 5.94 -2.38 -0.01 1.65 16 29 H 0.07 3.91 5.96 -2.39 -0.01 3.90 16 30 H 0.04 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.27 13.98 8.31 -92.70 -0.77 13.21 16 32 H 0.12 5.01 4.56 -2.91 -0.01 4.99 16 33 H 0.15 3.64 8.06 -2.91 -0.02 3.61 16 34 H 0.16 3.24 8.06 -2.91 -0.02 3.21 16 35 H 0.15 4.77 5.74 -2.91 -0.02 4.75 16 36 H 0.41 12.42 7.66 -92.71 -0.71 11.71 16 37 H 0.41 8.65 8.40 -92.71 -0.78 7.87 16 38 H 0.11 1.99 7.57 -2.39 -0.02 1.97 16 39 H 0.08 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 41 H 0.39 2.33 9.12 -74.06 -0.68 1.66 16 42 H 0.02 0.53 8.14 -2.39 -0.02 0.51 16 43 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 44 H 0.38 5.08 9.12 -74.06 -0.68 4.41 16 Total: -1.00 -69.93 370.36 -2.23 -72.16 By element: Atomic # 1 Polarization: 40.44 SS G_CDS: -1.75 Total: 38.69 kcal Atomic # 6 Polarization: -17.68 SS G_CDS: 5.17 Total: -12.52 kcal Atomic # 7 Polarization: -87.76 SS G_CDS: -3.69 Total: -91.45 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -2.86 Total: -42.75 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.67 kcal Atomic # 16 Polarization: -7.68 SS G_CDS: -1.12 Total: -8.80 kcal Total: -69.93 -2.23 -72.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266460534.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.225 kcal (2) G-P(sol) polarization free energy of solvation -69.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds