Wall clock time and date at job start Sat Apr 11 2020 05:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 N 1.46896 * 109.46919 * 2 1 4 4 C 1.46904 * 110.99754 * 199.61428 * 3 2 1 5 5 C 1.50699 * 109.47199 * 66.04227 * 4 3 2 6 6 H 1.08002 * 119.99608 * 0.02562 * 5 4 3 7 7 C 1.37871 * 120.00230 * 180.02562 * 5 4 3 8 8 N 1.31517 * 119.99849 * 0.02562 * 7 5 4 9 9 Si 1.86795 * 120.00419 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47267 * 60.00016 * 9 7 5 11 11 H 1.48498 * 109.47723 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47175 * 300.00258 * 9 7 5 13 13 C 1.46895 * 111.00195 * 75.66120 * 3 2 1 14 14 C 1.50708 * 109.46951 * 199.97918 * 13 3 2 15 15 O 1.21278 * 119.99789 * 5.10993 * 14 13 3 16 16 N 1.34781 * 119.99582 * 185.11169 * 14 13 3 17 17 C 1.39923 * 119.99452 * 184.80990 * 16 14 13 18 18 C 1.38870 * 120.07347 * 34.04860 * 17 16 14 19 19 C 1.38115 * 119.93444 * 180.02562 * 18 17 16 20 20 C 1.38282 * 120.06668 * 359.97438 * 19 18 17 21 21 S 1.76195 * 119.93076 * 179.97438 * 20 19 18 22 22 C 1.81390 * 104.45102 * 90.00173 * 21 20 19 23 23 O 1.42111 * 104.27543 * 333.93236 * 21 20 19 24 24 O 1.42099 * 104.27987 * 206.07591 * 21 20 19 25 25 C 1.38290 * 120.14129 * 0.26363 * 20 19 18 26 26 C 1.38115 * 120.06864 * 359.47928 * 25 20 19 27 27 H 1.09003 * 109.46541 * 64.47465 * 1 2 3 28 28 H 1.08998 * 109.47194 * 184.47426 * 1 2 3 29 29 H 1.08993 * 109.46982 * 304.47679 * 1 2 3 30 30 H 1.08997 * 109.46890 * 239.99499 * 2 1 3 31 31 H 1.09007 * 109.46671 * 119.99459 * 2 1 3 32 32 H 1.08998 * 109.47074 * 186.04399 * 4 3 2 33 33 H 1.09001 * 109.47193 * 306.04551 * 4 3 2 34 34 H 0.97006 * 120.00102 * 180.02562 * 8 7 5 35 35 H 1.09006 * 109.47402 * 79.98137 * 13 3 2 36 36 H 1.08996 * 109.47155 * 319.97503 * 13 3 2 37 37 H 0.96993 * 120.00625 * 4.80971 * 16 14 13 38 38 H 1.08004 * 120.03637 * 0.02562 * 18 17 16 39 39 H 1.07998 * 119.96506 * 179.97438 * 19 18 17 40 40 H 1.09003 * 109.46964 * 60.00050 * 22 21 20 41 41 H 1.08999 * 109.47411 * 300.00265 * 22 21 20 42 42 H 1.08999 * 109.47380 * 180.02562 * 22 21 20 43 43 H 1.07997 * 119.96422 * 179.74764 * 25 20 19 44 44 H 1.07999 * 120.03118 * 180.26222 * 26 25 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4132 1.4507 -0.4604 5 6 3.4829 1.0457 -1.9103 6 1 2.5820 0.7677 -2.4371 7 6 4.6965 1.0300 -2.5641 8 7 5.7936 1.3680 -1.9224 9 14 4.7829 0.5287 -4.3615 10 1 3.9499 1.4518 -5.1734 11 1 6.1915 0.5950 -4.8269 12 1 4.2756 -0.8587 -4.5133 13 6 1.8750 1.9945 1.3286 14 6 1.9093 3.4956 1.1991 15 8 1.9479 4.0087 0.1008 16 7 1.8971 4.2678 2.3037 17 6 1.8272 5.6601 2.1832 18 6 1.1023 6.2334 1.1467 19 6 1.0357 7.6080 1.0302 20 6 1.6896 8.4133 1.9446 21 16 1.6028 10.1665 1.7922 22 6 0.1447 10.6338 2.7648 23 8 1.3702 10.3867 0.4077 24 8 2.7902 10.6320 2.4187 25 6 2.4163 7.8455 2.9751 26 6 2.4824 6.4716 3.1001 27 1 -0.3632 0.4429 -0.9274 28 1 -0.3633 -1.0245 0.0802 29 1 -0.3633 0.5817 0.8471 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8901 32 1 3.7848 2.4693 -0.3494 33 1 4.0251 0.7737 0.1357 34 1 6.6475 1.3573 -2.3825 35 1 2.6930 1.6665 1.9701 36 1 0.9248 1.6894 1.7668 37 1 1.9367 3.8584 3.1821 38 1 0.5911 5.6050 0.4324 39 1 0.4724 8.0544 0.2241 40 1 0.2832 10.3217 3.8000 41 1 -0.7385 10.1453 2.3532 42 1 0.0130 11.7151 2.7255 43 1 2.9292 8.4771 3.6853 44 1 3.0467 6.0288 3.9076 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000266902701.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:35 Heat of formation + Delta-G solvation = -60.312445 kcal Electronic energy + Delta-G solvation = -26963.925316 eV Core-core repulsion = 23009.434395 eV Total energy + Delta-G solvation = -3954.490921 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.52350 -38.63093 -37.26539 -36.58567 -36.09481 -34.73697 -32.62850 -31.18681 -30.78105 -30.06512 -29.69716 -28.04635 -25.37827 -23.36389 -22.97250 -22.44928 -20.79471 -19.77987 -19.23082 -18.18105 -17.49465 -16.97225 -16.50173 -16.39279 -16.04867 -15.39328 -15.01902 -14.74565 -14.58076 -14.27640 -13.95117 -13.81875 -13.69070 -13.55276 -13.50619 -13.27350 -13.05743 -12.84769 -12.34784 -12.24543 -12.14844 -12.06603 -11.77971 -11.54743 -11.35354 -11.27963 -11.01477 -10.91250 -10.72229 -10.60565 -10.50615 -10.21159 -9.88611 -9.56216 -9.19964 -9.11746 -8.47523 -8.40188 -7.36937 -5.99571 -3.99862 -0.14510 0.68705 1.20516 2.66315 2.78140 2.94665 3.36362 3.40123 3.40836 3.44295 3.78669 3.89808 4.43740 4.44455 4.50791 4.66929 4.73540 4.80619 4.99950 5.13129 5.27402 5.32523 5.36334 5.39369 5.42880 5.58296 5.66074 5.75087 5.79853 5.87889 5.97275 6.01273 6.13724 6.20861 6.33839 6.62068 6.69105 6.81892 7.18484 7.24259 7.36728 7.78677 8.06234 8.13474 8.33123 8.52197 9.05646 9.63347 11.11806 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.002564 C = 0.002333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.749336 B =10916.811560 C =11998.451220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.056 3.944 3 N -0.520 5.520 4 C 0.195 3.805 5 C -0.503 4.503 6 H 0.063 0.937 7 C 0.055 3.945 8 N -0.900 5.900 9 Si 0.899 3.101 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.277 1.277 13 C 0.039 3.961 14 C 0.509 3.491 15 O -0.468 6.468 16 N -0.689 5.689 17 C 0.220 3.780 18 C -0.145 4.145 19 C -0.002 4.002 20 C -0.687 4.687 21 S 2.505 3.495 22 C -0.652 4.652 23 O -0.938 6.938 24 O -0.942 6.942 25 C -0.004 4.004 26 C -0.175 4.175 27 H 0.060 0.940 28 H 0.049 0.951 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.020 0.980 32 H 0.035 0.965 33 H -0.011 1.011 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.096 0.904 37 H 0.410 0.590 38 H 0.146 0.854 39 H 0.143 0.857 40 H 0.130 0.870 41 H 0.131 0.869 42 H 0.129 0.871 43 H 0.142 0.858 44 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.668 12.074 16.952 24.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.072 4.072 3 N -0.245 5.245 4 C 0.070 3.930 5 C -0.541 4.541 6 H 0.081 0.919 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.727 3.273 10 H -0.201 1.201 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.093 4.093 14 C 0.296 3.704 15 O -0.337 6.337 16 N -0.335 5.335 17 C 0.123 3.877 18 C -0.167 4.167 19 C -0.022 4.022 20 C -0.776 4.776 21 S 2.685 3.315 22 C -0.801 4.801 23 O -0.936 6.936 24 O -0.939 6.939 25 C -0.023 4.023 26 C -0.196 4.196 27 H 0.079 0.921 28 H 0.068 0.932 29 H 0.061 0.939 30 H 0.110 0.890 31 H 0.038 0.962 32 H 0.053 0.947 33 H 0.006 0.994 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.114 0.886 37 H 0.246 0.754 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.147 0.853 43 H 0.160 0.840 44 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -13.172 13.126 15.255 24.052 hybrid contribution 0.333 -1.594 0.559 1.722 sum -12.840 11.532 15.814 23.408 Atomic orbital electron populations 1.21812 0.96491 1.00091 1.01789 1.22021 0.94269 0.89441 1.01419 1.61855 1.26483 1.16880 1.19250 1.19790 0.80376 0.97086 0.95703 1.21035 0.93217 1.44559 0.95320 0.91874 1.24972 0.95631 0.95607 0.98399 1.69945 0.98466 1.48740 1.36780 0.86548 0.76863 0.78950 0.84974 1.20103 1.21387 1.20307 1.21897 1.02254 0.90185 0.95004 1.21252 0.75461 0.90141 0.83585 1.90793 1.42876 1.74448 1.25552 1.43990 1.74607 1.04035 1.10912 1.18113 0.91536 0.83325 0.94713 1.21351 1.00493 0.95205 0.99614 1.20806 0.93481 0.93157 0.94709 1.30297 1.14946 1.25130 1.07191 1.04942 0.76540 0.74489 0.75501 1.30246 1.21480 1.12180 1.16203 1.93595 1.86316 1.84555 1.29088 1.93574 1.42365 1.79777 1.78167 1.20657 0.92563 0.94766 0.94340 1.21000 1.02629 0.93666 1.02348 0.92111 0.93228 0.93862 0.88973 0.96151 0.94692 0.99374 0.92904 0.92486 0.88636 0.75369 0.83640 0.83909 0.85107 0.85024 0.85278 0.83987 0.84784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 10.07 37.16 0.37 -1.72 16 2 C 0.06 1.02 5.51 -3.82 -0.02 1.00 16 3 N -0.52 -10.88 3.95 -237.51 -0.94 -11.82 16 4 C 0.20 5.11 4.36 -4.97 -0.02 5.09 16 5 C -0.50 -14.40 8.23 -34.44 -0.28 -14.68 16 6 H 0.06 1.79 7.31 -52.49 -0.38 1.40 16 7 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 8 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 9 Si 0.90 22.28 29.54 -169.99 -5.02 17.26 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 13 C 0.04 0.62 5.30 -4.97 -0.03 0.59 16 14 C 0.51 8.61 7.13 -10.98 -0.08 8.54 16 15 O -0.47 -10.30 13.23 5.56 0.07 -10.23 16 16 N -0.69 -8.53 5.34 -9.86 -0.05 -8.59 16 17 C 0.22 2.87 6.27 -83.70 -0.52 2.35 16 18 C -0.15 -2.04 8.65 -39.39 -0.34 -2.38 16 19 C 0.00 -0.02 9.46 -39.61 -0.37 -0.40 16 20 C -0.69 -7.32 5.66 -39.55 -0.22 -7.54 16 21 S 2.51 22.21 5.80 -107.50 -0.62 21.59 16 22 C -0.65 -2.62 10.79 101.05 1.09 -1.53 16 23 O -0.94 -11.85 17.12 -57.54 -0.99 -12.83 16 24 O -0.94 -11.21 17.11 -57.54 -0.98 -12.19 16 25 C 0.00 -0.04 9.46 -39.61 -0.37 -0.41 16 26 C -0.17 -1.88 9.97 -39.39 -0.39 -2.27 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.56 6.66 -51.93 -0.35 0.21 16 30 H 0.09 1.89 6.58 -51.93 -0.34 1.55 16 31 H 0.02 0.34 8.00 -51.92 -0.42 -0.08 16 32 H 0.04 1.03 6.90 -51.93 -0.36 0.67 16 33 H -0.01 -0.31 8.12 -51.93 -0.42 -0.74 16 34 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 35 H 0.06 0.85 8.00 -51.93 -0.42 0.44 16 36 H 0.10 1.20 6.44 -51.93 -0.33 0.86 16 37 H 0.41 3.37 8.82 -40.82 -0.36 3.01 16 38 H 0.15 2.26 6.46 -52.48 -0.34 1.92 16 39 H 0.14 1.49 7.56 -52.49 -0.40 1.10 16 40 H 0.13 0.31 8.14 -51.92 -0.42 -0.11 16 41 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 42 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 43 H 0.14 1.11 7.56 -52.49 -0.40 0.72 16 44 H 0.13 1.08 8.06 -52.49 -0.42 0.66 16 LS Contribution 378.50 15.07 5.70 5.70 Total: -1.00 -40.00 378.50 -9.57 -49.56 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -6.18 Total: 0.07 kcal Atomic # 6 Polarization: -10.57 SS G_CDS: -1.29 Total: -11.86 kcal Atomic # 7 Polarization: -46.82 SS G_CDS: -0.26 Total: -47.07 kcal Atomic # 8 Polarization: -33.35 SS G_CDS: -1.90 Total: -35.25 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 22.21 SS G_CDS: -0.62 Total: 21.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -40.00 -9.57 -49.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000266902701.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.749 kcal (2) G-P(sol) polarization free energy of solvation -39.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.566 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds