Wall clock time and date at job start Sat Apr 11 2020 05:58:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46936 * 2 1 4 4 C 1.46501 * 120.00304 * 270.00064 * 3 2 1 5 5 C 1.50693 * 109.47199 * 270.00577 * 4 3 2 6 6 H 1.08000 * 120.00324 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99822 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00228 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47030 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46811 * 119.99645 * 9 7 5 12 12 H 1.48495 * 109.47224 * 239.99589 * 9 7 5 13 13 C 1.34776 * 120.00074 * 90.00223 * 3 2 1 14 14 O 1.21281 * 120.00073 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99618 * 359.97438 * 13 3 2 16 16 C 1.53008 * 109.46799 * 179.97438 * 15 13 3 17 17 N 1.46501 * 109.46803 * 179.97438 * 16 15 13 18 18 S 1.65601 * 119.99590 * 164.99984 * 17 16 15 19 19 O 1.42098 * 106.40290 * 311.46059 * 18 17 16 20 20 O 1.42107 * 106.39817 * 178.54092 * 18 17 16 21 21 C 1.76199 * 107.21620 * 65.00305 * 18 17 16 22 22 C 1.38237 * 119.99920 * 90.00183 * 21 18 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00031 * 269.97364 * 21 18 17 27 27 H 1.08993 * 109.46978 * 299.99438 * 1 2 3 28 28 H 1.09000 * 109.47268 * 59.99984 * 1 2 3 29 29 H 1.08996 * 109.46721 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46691 * 240.00354 * 2 1 3 31 31 H 1.08991 * 109.47119 * 120.00305 * 2 1 3 32 32 H 1.09009 * 109.46977 * 30.00365 * 4 3 2 33 33 H 1.09003 * 109.47050 * 149.99413 * 4 3 2 34 34 H 0.96999 * 119.99626 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47159 * 60.00429 * 15 13 3 36 36 H 1.08994 * 109.47462 * 299.99811 * 15 13 3 37 37 H 1.08997 * 109.46753 * 60.00378 * 16 15 13 38 38 H 1.08994 * 109.47121 * 300.00217 * 16 15 13 39 39 H 0.97000 * 120.00223 * 345.00906 * 17 16 15 40 40 H 1.08005 * 120.00088 * 359.96860 * 22 21 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99990 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1268 -3.6175 9 14 5.9136 2.0977 -3.4165 10 1 6.6009 1.2414 -2.4168 11 1 5.9214 1.4192 -4.7375 12 1 6.6209 3.3990 -3.5243 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3062 2.4723 16 6 2.3235 2.2434 3.6353 17 7 2.0782 1.5531 4.9040 18 16 2.6904 2.1696 6.3138 19 8 4.0593 2.4583 6.0645 20 8 2.2555 1.3032 7.3528 21 6 1.8981 3.7184 6.5931 22 6 0.7235 3.7727 7.3199 23 6 0.1016 4.9878 7.5386 24 6 0.6550 6.1486 7.0315 25 6 1.8270 6.0937 6.3007 26 6 2.4515 4.8793 6.0861 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1383 34 1 3.6753 3.5173 -4.4434 35 1 2.6212 0.4186 2.5302 36 1 0.9433 1.0125 2.5299 37 1 1.6939 3.1313 3.5776 38 1 3.3716 2.5368 3.5775 39 1 1.5574 0.7349 4.9182 40 1 0.2911 2.8657 7.7160 41 1 -0.8163 5.0301 8.1060 42 1 0.1693 7.0979 7.2028 43 1 2.2571 7.0001 5.9008 44 1 3.3693 4.8368 5.5184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000267397427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:44 Heat of formation + Delta-G solvation = -87.614103 kcal Electronic energy + Delta-G solvation = -27170.776489 eV Core-core repulsion = 23215.101680 eV Total energy + Delta-G solvation = -3955.674809 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.36996 -39.24989 -37.39759 -36.01251 -35.87801 -35.21125 -32.83888 -31.60050 -31.33223 -30.43483 -30.02037 -27.06309 -24.05568 -23.51260 -23.06059 -23.02393 -21.97449 -19.84892 -18.61215 -18.18356 -17.47225 -16.86347 -16.44168 -16.32297 -15.96208 -15.63304 -15.27804 -15.10290 -14.84914 -14.45226 -14.26440 -13.86420 -13.82822 -13.44664 -13.33845 -12.97997 -12.58194 -12.51125 -12.33964 -12.22949 -12.14200 -12.05093 -11.74818 -11.69168 -11.57500 -11.45555 -11.17175 -10.97977 -10.90936 -10.74191 -10.54828 -10.14640 -9.75184 -9.65296 -9.62753 -9.34858 -8.98484 -8.45199 -7.71232 -6.06151 -4.10723 0.17826 0.55166 0.98858 2.77024 3.22633 3.29351 3.33194 3.37770 3.42568 3.60144 3.88948 4.14000 4.43954 4.54169 4.57630 4.66292 4.73314 4.99732 5.02045 5.10319 5.14779 5.26148 5.28875 5.36519 5.42021 5.53124 5.59791 5.60870 5.73267 5.76791 5.89059 5.90589 6.01096 6.03616 6.06200 6.19510 6.44269 6.51347 6.75898 7.02685 7.41526 7.50933 7.90372 8.21486 8.36828 8.87274 9.03494 9.54676 11.01960 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002678 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.870259 B =10451.191690 C =10811.945699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.105 3.895 3 N -0.596 5.596 4 C 0.246 3.754 5 C -0.526 4.526 6 H 0.058 0.942 7 C 0.061 3.939 8 N -0.895 5.895 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.508 3.492 14 O -0.541 6.541 15 C -0.149 4.149 16 C 0.130 3.870 17 N -1.117 6.117 18 S 2.699 3.301 19 O -0.952 6.952 20 O -0.963 6.963 21 C -0.677 4.677 22 C -0.021 4.021 23 C -0.144 4.144 24 C -0.065 4.065 25 C -0.139 4.139 26 C -0.017 4.017 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.074 0.926 38 H 0.091 0.909 39 H 0.417 0.583 40 H 0.139 0.861 41 H 0.131 0.869 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.528 -1.340 20.487 22.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.019 4.019 3 N -0.327 5.327 4 C 0.127 3.873 5 C -0.565 4.565 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.534 5.534 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.293 3.707 14 O -0.419 6.419 15 C -0.190 4.190 16 C 0.004 3.996 17 N -0.878 5.878 18 S 2.788 3.212 19 O -0.942 6.942 20 O -0.953 6.953 21 C -0.764 4.764 22 C -0.040 4.040 23 C -0.163 4.163 24 C -0.083 4.083 25 C -0.158 4.158 26 C -0.036 4.036 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.078 0.922 30 H 0.101 0.899 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.061 0.939 34 H 0.072 0.928 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.092 0.908 38 H 0.110 0.890 39 H 0.252 0.748 40 H 0.157 0.843 41 H 0.149 0.851 42 H 0.148 0.852 43 H 0.152 0.848 44 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.578 -0.834 20.804 22.518 hybrid contribution 0.101 0.089 -0.659 0.673 sum -8.477 -0.744 20.144 21.868 Atomic orbital electron populations 1.22221 0.96795 1.01429 1.02304 1.21437 0.93479 0.84193 1.02816 1.48258 1.63457 1.13263 1.07751 1.19283 0.96316 0.93640 0.78086 1.21474 0.96899 1.31839 1.06260 0.92368 1.24940 0.97886 0.94903 0.96409 1.69943 1.35619 1.33500 1.14345 0.86443 0.84602 0.78089 0.78292 1.19753 1.21012 1.20862 1.20071 0.78729 0.86919 0.84961 1.90687 1.45944 1.18054 1.87257 1.21869 1.03819 1.00138 0.93209 1.21094 1.03193 0.94566 0.80723 1.55494 1.72285 1.37918 1.22068 1.01730 0.73881 0.73397 0.72210 1.93613 1.30687 1.85153 1.84752 1.93585 1.82938 1.64341 1.54419 1.30972 1.10718 1.21122 1.13551 1.20927 0.91652 0.99113 0.92337 1.21298 1.00807 0.92634 1.01574 1.21525 0.94546 0.98656 0.93594 1.21370 0.96304 0.98347 0.99770 1.21073 0.97883 0.91386 0.93274 0.93084 0.92047 0.92160 0.89914 0.91599 0.95031 0.93862 0.92783 0.88474 0.88815 0.90794 0.89048 0.74799 0.84301 0.85092 0.85234 0.84796 0.83864 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 37.16 0.38 -1.69 16 2 C 0.11 1.56 5.93 -4.04 -0.02 1.53 16 3 N -0.60 -11.87 2.46 -175.05 -0.43 -12.30 16 4 C 0.25 6.23 5.16 -5.20 -0.03 6.20 16 5 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 6 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 7 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 9 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 10 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 13 C 0.51 9.76 7.67 -10.98 -0.08 9.68 16 14 O -0.54 -12.75 15.56 5.56 0.09 -12.67 16 15 C -0.15 -1.91 4.40 -27.88 -0.12 -2.03 16 16 C 0.13 1.62 5.51 -4.04 -0.02 1.60 16 17 N -1.12 -10.90 6.00 -10.61 -0.06 -10.96 16 18 S 2.70 30.80 5.74 -107.50 -0.62 30.18 16 19 O -0.95 -14.03 16.75 -57.17 -0.96 -14.99 16 20 O -0.96 -12.45 17.28 -57.17 -0.99 -13.44 16 21 C -0.68 -7.23 5.95 -39.58 -0.24 -7.47 16 22 C -0.02 -0.20 9.52 -39.58 -0.38 -0.57 16 23 C -0.14 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.06 -0.52 10.05 -39.58 -0.40 -0.91 16 25 C -0.14 -1.28 10.05 -39.58 -0.40 -1.68 16 26 C -0.02 -0.18 9.52 -39.58 -0.38 -0.56 16 27 H 0.05 0.57 7.22 -51.93 -0.37 0.20 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.08 1.30 8.07 -51.93 -0.42 0.89 16 31 H 0.07 0.78 6.44 -51.93 -0.33 0.45 16 32 H 0.03 0.81 8.07 -51.92 -0.42 0.39 16 33 H 0.04 1.24 7.42 -51.93 -0.39 0.86 16 34 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 35 H 0.10 1.10 7.40 -51.93 -0.38 0.71 16 36 H 0.09 0.94 7.18 -51.93 -0.37 0.56 16 37 H 0.07 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.09 1.30 7.71 -51.93 -0.40 0.90 16 39 H 0.42 2.97 8.65 -34.47 -0.30 2.67 16 40 H 0.14 1.07 7.62 -52.48 -0.40 0.67 16 41 H 0.13 0.71 8.06 -52.49 -0.42 0.28 16 42 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 43 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 44 H 0.14 1.50 7.62 -52.49 -0.40 1.10 16 LS Contribution 384.90 15.07 5.80 5.80 Total: -1.00 -36.96 384.90 -10.22 -47.18 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: -6.27 Total: 0.85 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -2.50 Total: -10.82 kcal Atomic # 7 Polarization: -49.05 SS G_CDS: 0.24 Total: -48.81 kcal Atomic # 8 Polarization: -39.24 SS G_CDS: -1.86 Total: -41.10 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 30.80 SS G_CDS: -0.62 Total: 30.18 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.96 -10.22 -47.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267397427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.430 kcal (2) G-P(sol) polarization free energy of solvation -36.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds