Wall clock time and date at job start Sat Apr 11 2020 05:58:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46499 * 109.46936 * 2 1 4 4 C 1.46501 * 120.00304 * 270.00064 * 3 2 1 5 5 C 1.50693 * 109.47199 * 270.00577 * 4 3 2 6 6 H 1.08000 * 120.00324 * 359.97438 * 5 4 3 7 7 C 1.37882 * 120.00052 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99822 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00228 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.47030 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46811 * 119.99645 * 9 7 5 12 12 H 1.48495 * 109.47224 * 239.99589 * 9 7 5 13 13 C 1.34776 * 120.00074 * 90.00223 * 3 2 1 14 14 O 1.21281 * 120.00073 * 180.02562 * 13 3 2 15 15 C 1.50706 * 119.99618 * 359.97438 * 13 3 2 16 16 C 1.53008 * 109.46799 * 179.97438 * 15 13 3 17 17 N 1.46501 * 109.46803 * 179.97438 * 16 15 13 18 18 S 1.65601 * 119.99590 * 164.99984 * 17 16 15 19 19 O 1.42098 * 106.40290 * 311.46059 * 18 17 16 20 20 O 1.42107 * 106.39817 * 178.54092 * 18 17 16 21 21 C 1.76199 * 107.21620 * 65.00305 * 18 17 16 22 22 C 1.38237 * 119.99920 * 90.00183 * 21 18 17 23 23 C 1.38235 * 119.99712 * 180.02562 * 22 21 18 24 24 C 1.38234 * 120.00220 * 359.94731 * 23 22 21 25 25 C 1.38233 * 120.00037 * 0.28719 * 24 23 22 26 26 C 1.38234 * 120.00031 * 269.97364 * 21 18 17 27 27 H 1.08993 * 109.46978 * 299.99438 * 1 2 3 28 28 H 1.09000 * 109.47268 * 59.99984 * 1 2 3 29 29 H 1.08996 * 109.46721 * 180.02562 * 1 2 3 30 30 H 1.09006 * 109.46691 * 240.00354 * 2 1 3 31 31 H 1.08991 * 109.47119 * 120.00305 * 2 1 3 32 32 H 1.09009 * 109.46977 * 30.00365 * 4 3 2 33 33 H 1.09003 * 109.47050 * 149.99413 * 4 3 2 34 34 H 0.96999 * 119.99626 * 180.02562 * 8 7 5 35 35 H 1.08997 * 109.47159 * 60.00429 * 15 13 3 36 36 H 1.08994 * 109.47462 * 299.99811 * 15 13 3 37 37 H 1.08997 * 109.46753 * 60.00378 * 16 15 13 38 38 H 1.08994 * 109.47121 * 300.00217 * 16 15 13 39 39 H 0.97000 * 120.00223 * 345.00906 * 17 16 15 40 40 H 1.08005 * 120.00088 * 359.96860 * 22 21 18 41 41 H 1.07999 * 119.99770 * 179.97438 * 23 22 21 42 42 H 1.08002 * 119.99744 * 180.02562 * 24 23 22 43 43 H 1.07998 * 120.00395 * 179.72811 * 25 24 23 44 44 H 1.07999 * 119.99990 * 0.02562 * 26 21 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2625 2.0719 -1.2687 5 6 3.6857 1.8351 -1.7038 6 1 4.3428 1.2309 -1.0959 7 6 4.1493 2.3906 -2.8775 8 7 3.3492 3.1268 -3.6175 9 14 5.9136 2.0977 -3.4165 10 1 6.6009 1.2414 -2.4168 11 1 5.9214 1.4192 -4.7375 12 1 6.6209 3.3990 -3.5243 13 6 2.2430 2.0166 1.1672 14 8 2.6468 3.1602 1.1672 15 6 1.9913 1.3062 2.4723 16 6 2.3235 2.2434 3.6353 17 7 2.0782 1.5531 4.9040 18 16 2.6904 2.1696 6.3138 19 8 4.0593 2.4583 6.0645 20 8 2.2555 1.3032 7.3528 21 6 1.8981 3.7184 6.5931 22 6 0.7235 3.7727 7.3199 23 6 0.1016 4.9878 7.5386 24 6 0.6550 6.1486 7.0315 25 6 1.8270 6.0937 6.3007 26 6 2.4515 4.8793 6.0861 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8934 -0.5138 0.8899 32 1 1.5816 1.6878 -2.0284 33 1 2.0954 3.1411 -1.1383 34 1 3.6753 3.5173 -4.4434 35 1 2.6212 0.4186 2.5302 36 1 0.9433 1.0125 2.5299 37 1 1.6939 3.1313 3.5776 38 1 3.3716 2.5368 3.5775 39 1 1.5574 0.7349 4.9182 40 1 0.2911 2.8657 7.7160 41 1 -0.8163 5.0301 8.1060 42 1 0.1693 7.0979 7.2028 43 1 2.2571 7.0001 5.9008 44 1 3.3693 4.8368 5.5184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000267397427.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:58:43 Heat of formation + Delta-G solvation = -114.737136 kcal Electronic energy + Delta-G solvation = -27171.952632 eV Core-core repulsion = 23215.101680 eV Total energy + Delta-G solvation = -3956.850952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.77136 -40.03632 -38.40329 -37.14396 -37.01826 -36.55558 -34.88966 -32.29128 -32.00666 -31.84108 -31.21613 -28.88601 -25.60815 -24.41482 -24.22751 -23.75267 -23.36706 -20.79302 -19.83277 -19.15901 -18.63226 -18.45622 -18.01365 -17.18746 -17.03517 -16.99618 -16.62153 -16.10565 -15.99468 -15.57932 -15.37995 -15.19287 -14.67664 -14.49868 -14.46219 -14.22762 -13.98747 -13.58355 -13.41766 -13.30348 -13.28372 -13.22907 -13.17542 -13.08708 -12.78861 -12.66183 -12.61312 -12.34754 -12.22764 -12.12846 -11.82890 -11.76363 -11.66621 -10.63882 -10.61260 -10.56087 -10.40410 -10.04217 -9.40793 -8.21686 -6.35929 -0.69673 -0.19176 0.30091 1.36625 1.39211 1.50748 1.85213 1.88108 2.34314 2.46971 2.51597 2.76745 3.08074 3.26944 3.63394 3.81642 3.90972 3.93923 4.09617 4.09869 4.18731 4.36256 4.38130 4.46646 4.49492 4.56532 4.68407 4.70755 4.87073 4.94812 5.00351 5.04081 5.05254 5.08695 5.10565 5.25826 5.26829 5.38110 5.44798 5.60405 5.86591 5.88124 6.08312 6.08700 6.72019 6.83470 7.29936 7.50623 8.85326 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013907 B = 0.002678 C = 0.002589 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.870259 B =10451.191690 C =10811.945699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.097 3.903 3 N -0.603 5.603 4 C 0.262 3.738 5 C -0.541 4.541 6 H 0.053 0.947 7 C 0.007 3.993 8 N -0.928 5.928 9 Si 0.965 3.035 10 H -0.267 1.267 11 H -0.270 1.270 12 H -0.283 1.283 13 C 0.496 3.504 14 O -0.597 6.597 15 C -0.134 4.134 16 C 0.135 3.865 17 N -1.101 6.101 18 S 2.716 3.284 19 O -0.992 6.992 20 O -0.976 6.976 21 C -0.686 4.686 22 C -0.032 4.032 23 C -0.144 4.144 24 C -0.064 4.064 25 C -0.151 4.151 26 C -0.043 4.043 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.094 0.906 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.021 0.979 33 H -0.002 1.002 34 H 0.266 0.734 35 H 0.123 0.877 36 H 0.135 0.865 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.433 0.567 40 H 0.155 0.845 41 H 0.163 0.837 42 H 0.160 0.840 43 H 0.148 0.852 44 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.821 -2.792 22.157 24.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.025 4.025 3 N -0.334 5.334 4 C 0.140 3.860 5 C -0.580 4.580 6 H 0.072 0.928 7 C -0.192 4.192 8 N -0.568 5.568 9 Si 0.790 3.210 10 H -0.192 1.192 11 H -0.195 1.195 12 H -0.209 1.209 13 C 0.285 3.715 14 O -0.479 6.479 15 C -0.175 4.175 16 C 0.008 3.992 17 N -0.864 5.864 18 S 2.808 3.192 19 O -0.982 6.982 20 O -0.967 6.967 21 C -0.775 4.775 22 C -0.051 4.051 23 C -0.162 4.162 24 C -0.081 4.081 25 C -0.170 4.170 26 C -0.063 4.063 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.113 0.887 30 H 0.087 0.913 31 H 0.124 0.876 32 H 0.039 0.961 33 H 0.016 0.984 34 H 0.075 0.925 35 H 0.141 0.859 36 H 0.153 0.847 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.271 0.729 40 H 0.172 0.828 41 H 0.180 0.820 42 H 0.178 0.822 43 H 0.165 0.835 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -9.890 -2.373 22.492 24.685 hybrid contribution 0.419 0.598 -1.146 1.359 sum -9.471 -1.775 21.346 23.420 Atomic orbital electron populations 1.22159 0.94481 1.03493 1.01809 1.21793 0.95369 0.81246 1.04114 1.48281 1.63705 1.15166 1.06209 1.18688 0.95100 0.91612 0.80593 1.21767 0.97997 1.31761 1.06431 0.92844 1.25836 1.02224 0.94558 0.96533 1.70056 1.37620 1.34327 1.14837 0.85400 0.79247 0.77980 0.78379 1.19151 1.19498 1.20852 1.21180 0.77221 0.86532 0.86594 1.90658 1.48237 1.20758 1.88200 1.21845 1.06854 0.99874 0.88884 1.20888 1.01876 0.94878 0.81567 1.55123 1.72321 1.38488 1.20464 1.00938 0.73025 0.73317 0.71970 1.93563 1.33527 1.85775 1.85294 1.93557 1.83010 1.65127 1.54979 1.30736 1.11667 1.20130 1.14945 1.21250 0.91210 1.00582 0.92063 1.21725 1.01559 0.91952 1.00985 1.21941 0.93778 1.00164 0.92263 1.21653 0.96987 0.98228 1.00083 1.21162 0.98255 0.92478 0.94388 0.91556 0.94616 0.88724 0.91338 0.87591 0.96111 0.98433 0.92470 0.85905 0.84738 0.90957 0.91436 0.72915 0.82764 0.81982 0.82194 0.83464 0.84983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 10.24 71.98 0.74 -2.78 16 2 C 0.10 2.69 5.93 86.38 0.51 3.20 16 3 N -0.60 -24.15 2.46 -826.14 -2.03 -26.18 16 4 C 0.26 13.87 5.16 85.63 0.44 14.31 16 5 C -0.54 -30.99 9.39 25.60 0.24 -30.75 16 6 H 0.05 3.03 7.81 -2.91 -0.02 3.01 16 7 C 0.01 0.42 5.46 84.66 0.46 0.88 16 8 N -0.93 -56.06 13.29 21.45 0.28 -55.77 16 9 Si 0.97 45.06 29.54 68.60 2.03 47.08 16 10 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 11 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 12 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 13 C 0.50 19.11 7.67 87.66 0.67 19.79 16 14 O -0.60 -29.37 15.56 -3.03 -0.05 -29.42 16 15 C -0.13 -3.11 4.40 29.85 0.13 -2.98 16 16 C 0.13 3.26 5.51 86.38 0.48 3.73 16 17 N -1.10 -19.76 6.00 -187.48 -1.12 -20.88 16 18 S 2.72 61.17 5.74 -56.49 -0.32 60.84 16 19 O -0.99 -30.17 16.75 -128.00 -2.14 -32.32 16 20 O -0.98 -24.23 17.28 -128.00 -2.21 -26.44 16 21 C -0.69 -14.40 5.95 22.27 0.13 -14.27 16 22 C -0.03 -0.54 9.52 22.27 0.21 -0.32 16 23 C -0.14 -1.91 10.05 22.27 0.22 -1.69 16 24 C -0.06 -0.86 10.05 22.27 0.22 -0.64 16 25 C -0.15 -2.67 10.05 22.27 0.22 -2.45 16 26 C -0.04 -0.96 9.52 22.27 0.21 -0.75 16 27 H 0.07 1.25 7.22 -2.39 -0.02 1.23 16 28 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 2.10 8.07 -2.38 -0.02 2.08 16 31 H 0.11 2.09 6.44 -2.39 -0.02 2.08 16 32 H 0.02 1.13 8.07 -2.38 -0.02 1.11 16 33 H 0.00 -0.15 7.42 -2.39 -0.02 -0.17 16 34 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 35 H 0.12 2.30 7.40 -2.39 -0.02 2.28 16 36 H 0.13 2.08 7.18 -2.39 -0.02 2.06 16 37 H 0.07 1.78 8.10 -2.39 -0.02 1.77 16 38 H 0.07 1.98 7.71 -2.39 -0.02 1.96 16 39 H 0.43 4.88 8.65 -96.74 -0.84 4.04 16 40 H 0.15 2.02 7.62 -2.91 -0.02 2.00 16 41 H 0.16 1.10 8.06 -2.91 -0.02 1.07 16 42 H 0.16 1.14 8.06 -2.91 -0.02 1.11 16 43 H 0.15 2.06 8.06 -2.91 -0.02 2.04 16 44 H 0.13 3.06 7.62 -2.91 -0.02 3.04 16 Total: -1.00 -84.98 384.90 -0.49 -85.47 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.18 Total: 12.33 kcal Atomic # 6 Polarization: -19.61 SS G_CDS: 4.90 Total: -14.71 kcal Atomic # 7 Polarization: -99.97 SS G_CDS: -2.87 Total: -102.84 kcal Atomic # 8 Polarization: -83.78 SS G_CDS: -4.40 Total: -88.18 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.08 kcal Atomic # 16 Polarization: 61.17 SS G_CDS: -0.32 Total: 60.84 kcal Total: -84.98 -0.49 -85.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000267397427.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.268 kcal (2) G-P(sol) polarization free energy of solvation -84.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.469 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds