Wall clock time and date at job start Sat Apr 11 2020 05:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 O 1.21280 * 120.00039 * 0.02562 * 15 14 12 17 17 N 1.34774 * 119.99865 * 180.02562 * 15 14 12 18 18 C 1.46505 * 120.00083 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47165 * 180.02562 * 18 17 15 20 20 O 1.42900 * 109.47372 * 64.99874 * 19 18 17 21 21 C 1.35899 * 116.99844 * 179.97438 * 20 19 18 22 22 C 1.38758 * 120.04890 * 359.72403 * 21 20 19 23 23 C 1.38139 * 119.96531 * 179.74601 * 22 21 20 24 24 C 1.38260 * 120.06896 * 0.55085 * 23 22 21 25 25 C 1.38369 * 120.10009 * 359.70285 * 24 23 22 26 26 Cl 1.73596 * 119.98564 * 180.02562 * 25 24 23 27 27 C 1.38282 * 120.02596 * 0.02562 * 25 24 23 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 33 33 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 34 34 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 35 35 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 36 36 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 37 37 H 0.97000 * 120.00176 * 359.97438 * 17 15 14 38 38 H 1.08998 * 109.46900 * 299.99990 * 18 17 15 39 39 H 1.08998 * 109.46728 * 59.99795 * 18 17 15 40 40 H 1.09004 * 109.46792 * 185.00008 * 19 18 17 41 41 H 1.09001 * 109.47115 * 304.99327 * 19 18 17 42 42 H 1.08000 * 120.01941 * 0.02562 * 22 21 20 43 43 H 1.07999 * 119.96254 * 180.24662 * 23 22 21 44 44 H 1.08001 * 119.94871 * 179.71771 * 24 23 22 45 45 H 1.08005 * 120.03199 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 8 2.4154 -1.9573 -3.4648 17 7 1.5151 -0.4790 -4.8526 18 6 1.8153 -1.3198 -6.0142 19 6 1.3259 -0.6253 -7.2866 20 8 2.0697 0.5780 -7.4886 21 6 1.7576 1.3197 -8.5838 22 6 0.7597 0.8949 -9.4493 23 6 0.4402 1.6529 -10.5591 24 6 1.1215 2.8286 -10.8145 25 6 2.1207 3.2522 -9.9561 26 17 2.9737 4.7291 -10.2794 27 6 2.4399 2.4994 -8.8410 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 3.8029 -1.3532 -0.3068 33 1 3.8209 -1.3107 -2.0864 34 1 3.9187 0.2052 -1.1592 35 1 0.4722 0.1326 -2.3564 36 1 2.0519 0.9348 -2.5279 37 1 1.0689 0.3737 -4.9735 38 1 2.8915 -1.4794 -6.0788 39 1 1.3113 -2.2804 -5.9073 40 1 1.4685 -1.2882 -8.1401 41 1 0.2674 -0.3856 -7.1856 42 1 0.2300 -0.0255 -9.2530 43 1 -0.3392 1.3242 -11.2306 44 1 0.8732 3.4173 -11.6853 45 1 3.2195 2.8302 -8.1706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268294905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:10 Heat of formation + Delta-G solvation = -40.494696 kcal Electronic energy + Delta-G solvation = -26191.284957 eV Core-core repulsion = 22235.609693 eV Total energy + Delta-G solvation = -3955.675265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.70701 -39.49136 -38.22498 -36.77573 -36.46682 -34.72154 -32.69784 -31.61144 -30.76524 -29.76657 -29.13112 -27.64174 -24.93816 -24.14099 -23.32084 -23.07941 -21.88587 -20.53175 -19.30516 -18.95348 -17.13805 -16.77735 -16.63878 -16.37243 -16.07689 -15.52410 -15.41888 -15.29327 -14.73607 -14.30825 -14.08255 -13.88134 -13.80307 -13.58391 -13.45090 -12.94283 -12.51540 -12.40100 -12.34449 -12.21777 -12.09163 -11.63805 -11.55654 -11.33186 -11.27729 -11.07871 -10.94152 -10.77046 -10.64233 -10.14079 -10.09542 -9.93253 -9.35961 -9.25572 -9.01182 -8.84464 -8.76537 -8.39896 -7.13707 -5.99526 -4.03027 0.61500 0.83995 1.58379 2.69485 3.00676 3.12049 3.22538 3.35505 3.38834 3.43252 4.18015 4.37581 4.43829 4.47258 4.58430 4.60154 4.69768 4.80581 4.90523 5.10006 5.19088 5.25308 5.33518 5.39599 5.58866 5.64763 5.76380 5.81589 5.82459 5.88611 6.02241 6.34795 6.47273 6.50532 6.79534 6.85222 6.95588 7.02772 7.15433 7.47858 7.57852 7.74285 7.85931 8.20398 8.32860 8.52452 8.62958 9.03431 9.61587 11.07576 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.001786 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.792355 B =15671.392258 C =16351.860308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.212 3.788 3 H -0.001 1.001 4 C -0.501 4.501 5 H 0.064 0.936 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.899 3.101 9 H -0.288 1.288 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.520 5.520 13 C 0.035 3.965 14 C 0.032 3.968 15 C 0.516 3.484 16 O -0.519 6.519 17 N -0.740 5.740 18 C 0.125 3.875 19 C 0.047 3.953 20 O -0.306 6.306 21 C 0.147 3.853 22 C -0.206 4.206 23 C -0.067 4.067 24 C -0.151 4.151 25 C 0.004 3.996 26 Cl -0.062 7.062 27 C -0.146 4.146 28 H 0.087 0.913 29 H 0.006 0.994 30 H 0.036 0.964 31 H 0.261 0.739 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.005 0.995 35 H 0.103 0.897 36 H 0.050 0.950 37 H 0.401 0.599 38 H 0.077 0.923 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.135 0.865 43 H 0.135 0.865 44 H 0.134 0.866 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.930 4.010 -29.602 29.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.106 3.894 3 H 0.017 0.983 4 C -0.539 4.539 5 H 0.083 0.917 6 C -0.143 4.143 7 N -0.535 5.535 8 Si 0.727 3.273 9 H -0.214 1.214 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.245 5.245 13 C -0.114 4.114 14 C -0.099 4.099 15 C 0.303 3.697 16 O -0.393 6.393 17 N -0.396 5.396 18 C 0.001 3.999 19 C -0.028 4.028 20 O -0.219 6.219 21 C 0.101 3.899 22 C -0.225 4.225 23 C -0.085 4.085 24 C -0.170 4.170 25 C -0.023 4.023 26 Cl -0.033 7.033 27 C -0.165 4.165 28 H 0.105 0.895 29 H 0.025 0.975 30 H 0.055 0.945 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.023 0.977 35 H 0.120 0.880 36 H 0.068 0.932 37 H 0.234 0.766 38 H 0.095 0.905 39 H 0.108 0.892 40 H 0.099 0.901 41 H 0.092 0.908 42 H 0.153 0.847 43 H 0.153 0.847 44 H 0.152 0.848 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -1.558 3.009 -29.179 29.375 hybrid contribution 0.243 0.896 0.581 1.095 sum -1.315 3.905 -28.599 28.894 Atomic orbital electron populations 1.21885 0.97761 0.99794 0.99818 1.19307 0.92310 0.92003 0.85765 0.98320 1.21110 1.30969 1.12289 0.89568 0.91747 1.24934 0.95251 0.95120 0.99030 1.69878 1.37023 1.23054 1.23506 0.86547 0.79100 0.79764 0.81924 1.21409 1.20192 1.20332 1.61883 1.10291 1.51784 1.00507 1.22328 0.87841 0.98660 1.02524 1.22013 1.02858 0.94656 0.90419 1.21055 0.77694 0.87231 0.83724 1.90649 1.40371 1.22947 1.85364 1.46019 1.63773 1.23767 1.06021 1.21296 1.02290 0.93844 0.82466 1.23216 0.96017 0.84900 0.98710 1.86164 1.59541 1.35096 1.41106 1.18765 0.93430 0.90982 0.86766 1.21406 1.00802 1.02858 0.97441 1.20912 0.98170 0.93221 0.96182 1.20981 0.97107 0.98294 1.00642 1.20594 0.95963 0.89486 0.96207 1.98393 1.76453 1.33353 1.95078 1.20260 1.03320 0.94187 0.98716 0.89452 0.97465 0.94500 0.92960 0.90661 0.92084 0.97660 0.87953 0.93205 0.76552 0.90465 0.89219 0.90146 0.90843 0.84710 0.84697 0.84780 0.83943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 8.76 37.16 0.33 -2.92 16 2 C 0.21 5.40 2.06 -68.87 -0.14 5.26 16 3 H 0.00 -0.02 8.14 -51.93 -0.42 -0.44 16 4 C -0.50 -13.96 7.93 -34.44 -0.27 -14.23 16 5 H 0.06 1.81 6.39 -52.49 -0.34 1.48 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.50 11.32 55.43 0.63 -24.87 16 8 Si 0.90 21.63 29.54 -169.99 -5.02 16.61 16 9 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 12 N -0.52 -11.77 4.36 -237.73 -1.04 -12.80 16 13 C 0.03 0.76 8.88 60.06 0.53 1.29 16 14 C 0.03 0.58 5.26 -4.97 -0.03 0.55 16 15 C 0.52 8.53 7.52 -10.98 -0.08 8.45 16 16 O -0.52 -10.48 14.33 5.56 0.08 -10.40 16 17 N -0.74 -8.67 5.50 -60.29 -0.33 -9.00 16 18 C 0.13 1.18 6.06 -4.04 -0.02 1.15 16 19 C 0.05 0.31 4.87 37.16 0.18 0.49 16 20 O -0.31 -2.71 10.08 -19.42 -0.20 -2.91 16 21 C 0.15 1.22 6.69 -39.22 -0.26 0.96 16 22 C -0.21 -1.33 9.04 -39.43 -0.36 -1.69 16 23 C -0.07 -0.38 10.04 -39.61 -0.40 -0.78 16 24 C -0.15 -1.00 9.83 -39.52 -0.39 -1.39 16 25 C 0.00 0.03 6.32 -39.52 -0.25 -0.22 16 26 Cl -0.06 -0.49 28.95 -51.86 -1.50 -1.99 16 27 C -0.15 -1.26 9.77 -39.40 -0.38 -1.65 16 28 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 29 H 0.01 0.14 6.20 -51.93 -0.32 -0.19 16 30 H 0.04 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 32 H 0.07 1.73 6.23 -51.93 -0.32 1.41 16 33 H 0.06 1.28 5.82 -51.93 -0.30 0.98 16 34 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 35 H 0.10 1.74 5.83 -51.93 -0.30 1.43 16 36 H 0.05 0.85 8.12 -51.93 -0.42 0.43 16 37 H 0.40 3.84 8.47 -40.82 -0.35 3.50 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.08 0.37 7.65 -51.93 -0.40 -0.03 16 41 H 0.07 0.38 7.67 -51.93 -0.40 -0.02 16 42 H 0.14 0.60 6.30 -52.49 -0.33 0.27 16 43 H 0.14 0.44 8.06 -52.49 -0.42 0.01 16 44 H 0.13 0.66 8.06 -52.49 -0.42 0.24 16 45 H 0.14 1.22 8.06 -52.48 -0.42 0.79 16 LS Contribution 381.71 15.07 5.75 5.75 Total: -1.00 -32.58 381.71 -9.58 -42.16 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -6.31 Total: 0.66 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: -1.64 Total: -3.21 kcal Atomic # 7 Polarization: -45.94 SS G_CDS: -0.74 Total: -46.68 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: -0.12 Total: -13.30 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.02 Total: 16.61 kcal Atomic # 17 Polarization: -0.49 SS G_CDS: -1.50 Total: -1.99 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.58 -9.58 -42.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268294905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.667 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds