Wall clock time and date at job start Sat Apr 11 2020 05:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46896 * 110.99938 * 183.95522 * 12 2 1 14 14 C 1.46898 * 110.99849 * 60.00056 * 12 2 1 15 15 C 1.50705 * 109.46881 * 190.00038 * 14 12 2 16 16 O 1.21280 * 120.00039 * 0.02562 * 15 14 12 17 17 N 1.34774 * 119.99865 * 180.02562 * 15 14 12 18 18 C 1.46505 * 120.00083 * 180.02562 * 17 15 14 19 19 C 1.52997 * 109.47165 * 180.02562 * 18 17 15 20 20 O 1.42900 * 109.47372 * 64.99874 * 19 18 17 21 21 C 1.35899 * 116.99844 * 179.97438 * 20 19 18 22 22 C 1.38758 * 120.04890 * 359.72403 * 21 20 19 23 23 C 1.38139 * 119.96531 * 179.74601 * 22 21 20 24 24 C 1.38260 * 120.06896 * 0.55085 * 23 22 21 25 25 C 1.38369 * 120.10009 * 359.70285 * 24 23 22 26 26 Cl 1.73596 * 119.98564 * 180.02562 * 25 24 23 27 27 C 1.38282 * 120.02596 * 0.02562 * 25 24 23 28 28 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 29 29 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 30 30 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 31 31 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.47187 * 59.99958 * 13 12 2 33 33 H 1.08996 * 109.47272 * 180.02562 * 13 12 2 34 34 H 1.09005 * 109.47145 * 299.99616 * 13 12 2 35 35 H 1.09005 * 109.47168 * 309.99661 * 14 12 2 36 36 H 1.08999 * 109.47122 * 70.00053 * 14 12 2 37 37 H 0.97000 * 120.00176 * 359.97438 * 17 15 14 38 38 H 1.08998 * 109.46900 * 299.99990 * 18 17 15 39 39 H 1.08998 * 109.46728 * 59.99795 * 18 17 15 40 40 H 1.09004 * 109.46792 * 185.00008 * 19 18 17 41 41 H 1.09001 * 109.47115 * 304.99327 * 19 18 17 42 42 H 1.08000 * 120.01941 * 0.02562 * 22 21 20 43 43 H 1.07999 * 119.96254 * 180.24662 * 23 22 21 44 44 H 1.08001 * 119.94871 * 179.71771 * 24 23 22 45 45 H 1.08005 * 120.03199 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 3.4850 -0.7945 -1.1871 14 6 1.5487 -0.0262 -2.4211 15 6 1.8580 -0.8908 -3.6160 16 8 2.4154 -1.9573 -3.4648 17 7 1.5151 -0.4790 -4.8526 18 6 1.8153 -1.3198 -6.0142 19 6 1.3259 -0.6253 -7.2866 20 8 2.0697 0.5780 -7.4886 21 6 1.7576 1.3197 -8.5838 22 6 0.7597 0.8949 -9.4493 23 6 0.4402 1.6529 -10.5591 24 6 1.1215 2.8286 -10.8145 25 6 2.1207 3.2522 -9.9561 26 17 2.9737 4.7291 -10.2794 27 6 2.4399 2.4994 -8.8410 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 0.7089 1.1611 3.4845 32 1 3.8029 -1.3532 -0.3068 33 1 3.8209 -1.3107 -2.0864 34 1 3.9187 0.2052 -1.1592 35 1 0.4722 0.1326 -2.3564 36 1 2.0519 0.9348 -2.5279 37 1 1.0689 0.3737 -4.9735 38 1 2.8915 -1.4794 -6.0788 39 1 1.3113 -2.2804 -5.9073 40 1 1.4685 -1.2882 -8.1401 41 1 0.2674 -0.3856 -7.1856 42 1 0.2300 -0.0255 -9.2530 43 1 -0.3392 1.3242 -11.2306 44 1 0.8732 3.4173 -11.6853 45 1 3.2195 2.8302 -8.1706 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268294905.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:09 Heat of formation + Delta-G solvation = -62.170616 kcal Electronic energy + Delta-G solvation = -26192.224896 eV Core-core repulsion = 22235.609693 eV Total energy + Delta-G solvation = -3956.615203 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.134 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.30334 -40.74322 -38.86034 -38.19982 -37.30068 -35.79834 -34.71612 -32.22629 -31.51729 -31.11023 -30.43221 -29.04249 -26.83588 -25.42140 -24.50457 -23.66162 -22.57037 -21.91945 -21.00289 -19.48835 -18.61548 -17.96644 -17.56263 -17.27089 -17.01195 -16.75212 -16.45069 -16.30470 -16.01762 -15.54291 -15.32664 -15.20312 -14.76336 -14.56042 -14.38096 -14.19471 -14.10710 -13.75894 -13.36076 -13.03008 -12.93441 -12.81194 -12.80064 -12.67311 -12.62826 -12.45596 -12.18013 -12.09864 -11.98192 -11.90797 -11.85370 -11.78201 -10.94731 -10.65478 -10.49625 -10.07683 -9.88956 -9.29312 -8.93441 -8.11329 -6.21878 0.09968 0.32497 1.02558 1.42833 1.44516 1.52193 1.69012 2.08767 2.19997 2.44318 2.61823 3.16695 3.43509 3.65366 3.82401 3.96008 4.03478 4.09958 4.13694 4.21031 4.31779 4.35106 4.43346 4.43860 4.58971 4.63615 4.69754 4.81055 4.82649 4.92068 5.02572 5.10039 5.13916 5.24584 5.26332 5.34704 5.46133 5.49810 5.57172 5.72350 5.76941 6.25813 6.32774 6.36010 6.48791 6.74471 6.90546 7.32699 7.46510 8.94413 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.019189 B = 0.001786 C = 0.001712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.792355 B =15671.392258 C =16351.860308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.216 3.784 3 H -0.029 1.029 4 C -0.522 4.522 5 H 0.054 0.946 6 C 0.013 3.987 7 N -0.917 5.917 8 Si 0.959 3.041 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.274 1.274 12 N -0.534 5.534 13 C 0.044 3.956 14 C 0.029 3.971 15 C 0.520 3.480 16 O -0.561 6.561 17 N -0.720 5.720 18 C 0.122 3.878 19 C 0.051 3.949 20 O -0.327 6.327 21 C 0.133 3.867 22 C -0.204 4.204 23 C -0.063 4.063 24 C -0.155 4.155 25 C -0.008 4.008 26 Cl -0.070 7.070 27 C -0.167 4.167 28 H 0.063 0.937 29 H 0.040 0.960 30 H 0.029 0.971 31 H 0.263 0.737 32 H 0.055 0.945 33 H 0.070 0.930 34 H 0.006 0.994 35 H 0.115 0.885 36 H 0.063 0.937 37 H 0.413 0.587 38 H 0.063 0.937 39 H 0.097 0.903 40 H 0.107 0.893 41 H 0.094 0.906 42 H 0.160 0.840 43 H 0.166 0.834 44 H 0.150 0.850 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.261 3.505 -31.524 31.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.109 3.891 3 H -0.012 1.012 4 C -0.560 4.560 5 H 0.072 0.928 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.785 3.215 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.199 1.199 12 N -0.259 5.259 13 C -0.104 4.104 14 C -0.102 4.102 15 C 0.307 3.693 16 O -0.439 6.439 17 N -0.374 5.374 18 C -0.001 4.001 19 C -0.023 4.023 20 O -0.241 6.241 21 C 0.088 3.912 22 C -0.222 4.222 23 C -0.081 4.081 24 C -0.174 4.174 25 C -0.035 4.035 26 Cl -0.041 7.041 27 C -0.186 4.186 28 H 0.082 0.918 29 H 0.059 0.941 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.025 0.975 35 H 0.133 0.867 36 H 0.080 0.920 37 H 0.250 0.750 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.125 0.875 41 H 0.112 0.888 42 H 0.177 0.823 43 H 0.183 0.817 44 H 0.167 0.833 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -2.906 2.535 -31.154 31.392 hybrid contribution 0.640 1.085 1.059 1.646 sum -2.266 3.621 -30.095 30.397 Atomic orbital electron populations 1.21694 0.96741 0.99343 1.00310 1.19122 0.93047 0.90321 0.86564 1.01166 1.21368 1.31259 1.12281 0.91091 0.92824 1.25667 0.95411 0.95826 1.01702 1.69987 1.37568 1.23931 1.24153 0.85600 0.78639 0.78679 0.78631 1.20632 1.19919 1.19925 1.61766 1.10552 1.52269 1.01300 1.22202 0.87776 0.98453 1.01964 1.22091 1.03543 0.95213 0.89344 1.20697 0.77564 0.86353 0.84692 1.90635 1.42629 1.24525 1.86096 1.45832 1.62084 1.24290 1.05219 1.21462 1.01740 0.94258 0.82647 1.23280 0.96587 0.84618 0.97840 1.86117 1.60407 1.35896 1.41655 1.18874 0.94247 0.90941 0.87180 1.21711 0.99961 1.03626 0.96909 1.21307 0.98205 0.92390 0.96189 1.21275 0.96495 0.98858 1.00733 1.20732 0.96696 0.89427 0.96637 1.98385 1.76763 1.33831 1.95091 1.20314 1.03893 0.95160 0.99254 0.91787 0.94122 0.95230 0.92835 0.92600 0.91195 0.97537 0.86725 0.91964 0.75040 0.91893 0.88459 0.87533 0.88764 0.82272 0.81660 0.83267 0.85032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.91 8.76 71.98 0.63 -5.28 16 2 C 0.22 11.15 2.06 44.17 0.09 11.25 16 3 H -0.03 -1.64 8.14 -2.39 -0.02 -1.66 16 4 C -0.52 -29.56 7.93 25.60 0.20 -29.35 16 5 H 0.05 3.09 6.39 -2.91 -0.02 3.07 16 6 C 0.01 0.71 5.30 84.66 0.45 1.16 16 7 N -0.92 -52.65 11.32 21.45 0.24 -52.41 16 8 Si 0.96 44.59 29.54 68.60 2.03 46.62 16 9 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 10 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 11 H -0.27 -12.48 7.11 99.48 0.71 -11.78 16 12 N -0.53 -24.26 4.36 -906.04 -3.95 -28.21 16 13 C 0.04 1.96 8.88 127.69 1.13 3.10 16 14 C 0.03 1.02 5.26 85.56 0.45 1.47 16 15 C 0.52 16.64 7.52 87.66 0.66 17.30 16 16 O -0.56 -22.41 14.33 -3.03 -0.04 -22.46 16 17 N -0.72 -15.51 5.50 -463.06 -2.55 -18.05 16 18 C 0.12 2.06 6.06 86.38 0.52 2.58 16 19 C 0.05 0.52 4.87 71.98 0.35 0.87 16 20 O -0.33 -5.21 10.08 -92.41 -0.93 -6.14 16 21 C 0.13 2.00 6.69 22.50 0.15 2.15 16 22 C -0.20 -1.98 9.04 22.37 0.20 -1.78 16 23 C -0.06 -0.52 10.04 22.25 0.22 -0.30 16 24 C -0.15 -1.73 9.83 22.31 0.22 -1.51 16 25 C -0.01 -0.13 6.32 22.31 0.14 0.01 16 26 Cl -0.07 -1.09 28.95 -2.72 -0.08 -1.17 16 27 C -0.17 -2.85 9.77 22.39 0.22 -2.63 16 28 H 0.06 3.39 6.07 -2.39 -0.01 3.37 16 29 H 0.04 1.63 6.20 -2.38 -0.01 1.61 16 30 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 32 H 0.06 2.64 6.23 -2.39 -0.01 2.63 16 33 H 0.07 2.96 5.82 -2.39 -0.01 2.95 16 34 H 0.01 0.27 8.14 -2.38 -0.02 0.25 16 35 H 0.11 3.68 5.83 -2.38 -0.01 3.66 16 36 H 0.06 2.04 8.12 -2.39 -0.02 2.02 16 37 H 0.41 6.94 8.47 -92.71 -0.79 6.15 16 38 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.11 0.57 7.65 -2.38 -0.02 0.55 16 41 H 0.09 0.59 7.67 -2.39 -0.02 0.57 16 42 H 0.16 0.69 6.30 -2.91 -0.02 0.67 16 43 H 0.17 0.33 8.06 -2.91 -0.02 0.31 16 44 H 0.15 1.14 8.06 -2.91 -0.02 1.11 16 45 H 0.13 2.38 8.06 -2.91 -0.02 2.36 16 Total: -1.00 -71.55 381.71 0.60 -70.96 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: 0.23 Total: 11.83 kcal Atomic # 6 Polarization: -6.61 SS G_CDS: 5.65 Total: -0.96 kcal Atomic # 7 Polarization: -92.42 SS G_CDS: -6.26 Total: -98.67 kcal Atomic # 8 Polarization: -27.62 SS G_CDS: -0.98 Total: -28.60 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 2.03 Total: 46.62 kcal Atomic # 17 Polarization: -1.09 SS G_CDS: -0.08 Total: -1.17 kcal Total: -71.55 0.60 -70.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268294905.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.785 kcal (2) G-P(sol) polarization free energy of solvation -71.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds