Wall clock time and date at job start Sat Apr 11 2020 05:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46965 * 2 1 4 4 C 1.50704 * 109.47091 * 240.00984 * 2 1 3 5 5 H 1.08001 * 119.99861 * 244.01662 * 4 2 1 6 6 C 1.37876 * 120.00446 * 64.00770 * 4 2 1 7 7 N 1.31510 * 120.00191 * 196.70306 * 6 4 2 8 8 Si 1.86803 * 119.99702 * 16.70553 * 6 4 2 9 9 H 1.48496 * 109.47141 * 95.74945 * 8 6 4 10 10 H 1.48499 * 109.47134 * 215.75062 * 8 6 4 11 11 H 1.48507 * 109.47147 * 335.74690 * 8 6 4 12 12 S 1.81395 * 109.47407 * 120.00568 * 2 1 3 13 13 C 1.76194 * 103.00124 * 288.74632 * 12 2 1 14 14 C 1.38779 * 120.10153 * 354.46521 * 13 12 2 15 15 C 1.38204 * 119.98805 * 179.97438 * 14 13 12 16 16 C 1.38298 * 120.19795 * 359.97438 * 15 14 13 17 17 C 1.38258 * 120.20217 * 0.02562 * 16 15 14 18 18 C 1.38635 * 120.01453 * 0.25996 * 17 16 15 19 19 N 1.40189 * 120.09977 * 179.72126 * 18 17 16 20 20 C 1.34774 * 119.99958 * 21.74494 * 19 18 17 21 21 O 1.21593 * 120.00123 * 5.55492 * 20 19 18 22 22 N 1.34779 * 119.99806 * 185.55287 * 20 19 18 23 23 C 1.46498 * 119.99721 * 180.02562 * 22 20 19 24 24 C 1.53005 * 109.46677 * 179.97438 * 23 22 20 25 25 H 1.08996 * 109.47483 * 304.99766 * 24 23 22 26 26 O 1.42897 * 109.47500 * 65.00094 * 24 23 22 27 27 C 1.53007 * 109.46952 * 184.99922 * 24 23 22 28 28 O 1.42898 * 109.47098 * 175.00181 * 27 24 23 29 29 H 1.09005 * 109.47029 * 304.46381 * 1 2 3 30 30 H 1.08996 * 109.47450 * 64.46613 * 1 2 3 31 31 H 1.08997 * 109.46901 * 184.46610 * 1 2 3 32 32 H 0.97008 * 119.99743 * 180.02562 * 7 6 4 33 33 H 1.08000 * 120.00964 * 359.97438 * 14 13 12 34 34 H 1.07998 * 119.90734 * 180.02562 * 15 14 13 35 35 H 1.07996 * 119.89442 * 180.02562 * 16 15 14 36 36 H 1.07998 * 119.99505 * 179.97438 * 17 16 15 37 37 H 0.97001 * 119.99598 * 201.74604 * 19 18 17 38 38 H 0.96997 * 120.00084 * 359.97438 * 22 20 19 39 39 H 1.08992 * 109.47446 * 299.99315 * 23 22 20 40 40 H 1.08996 * 109.47508 * 60.00317 * 23 22 20 41 41 H 0.96705 * 113.99817 * 59.99242 * 26 24 23 42 42 H 1.09004 * 109.46939 * 295.00071 * 27 24 23 43 43 H 1.08997 * 109.47194 * 54.99959 * 27 24 23 44 44 H 0.96700 * 114.00173 * 180.02562 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.5987 -1.6246 -1.1330 6 6 1.7688 -0.1928 -2.4811 7 7 1.9060 -0.9493 -3.5481 8 14 1.2170 1.5829 -2.6598 9 1 2.3927 2.4388 -2.9602 10 1 0.2333 1.6865 -3.7675 11 1 0.5860 2.0350 -1.3938 12 16 2.1347 -0.8552 1.4810 13 6 1.7467 0.2737 2.7769 14 6 1.2271 1.5252 2.4774 15 6 0.9231 2.4087 3.4957 16 6 1.1345 2.0496 4.8144 17 6 1.6517 0.8049 5.1219 18 6 1.9653 -0.0859 4.1069 19 7 2.4953 -1.3463 4.4165 20 6 2.3043 -1.8753 5.6412 21 8 1.5889 -1.3076 6.4440 22 7 2.9063 -3.0337 5.9762 23 6 2.6983 -3.6091 7.3073 24 6 3.4876 -4.9143 7.4278 25 1 3.2069 -5.5849 6.6157 26 8 4.8867 -4.6337 7.3517 27 6 3.1729 -5.5786 8.7697 28 8 3.8180 -6.8520 8.8336 29 1 -0.3633 0.5816 0.8473 30 1 -0.3634 0.4429 -0.9272 31 1 -0.3633 -1.0245 0.0800 32 1 1.7209 -0.5851 -4.4279 33 1 1.0604 1.8088 1.4487 34 1 0.5185 3.3822 3.2612 35 1 0.8948 2.7437 5.6063 36 1 1.8159 0.5281 6.1529 37 1 2.9995 -1.8375 3.7491 38 1 3.4767 -3.4868 5.3357 39 1 3.0418 -2.9051 8.0652 40 1 1.6374 -3.8117 7.4539 41 1 5.2073 -4.0412 8.0455 42 1 3.5343 -4.9470 9.5813 43 1 2.0954 -5.7119 8.8653 44 1 3.6616 -7.3312 9.6589 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271509326.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:14 Heat of formation + Delta-G solvation = -123.935718 kcal Electronic energy + Delta-G solvation = -26569.929804 eV Core-core repulsion = 22612.679971 eV Total energy + Delta-G solvation = -3957.249833 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.79434 -39.85548 -39.06829 -36.94097 -36.28569 -35.72840 -35.45106 -33.41983 -31.76615 -31.61542 -30.11091 -27.28582 -26.53707 -24.22930 -23.82757 -23.04719 -22.82732 -21.83861 -19.68204 -19.38125 -18.74027 -18.27909 -17.97897 -17.59304 -17.34189 -16.89007 -16.54284 -16.36374 -16.02110 -15.59606 -15.38798 -15.14927 -14.95290 -14.86963 -14.63388 -14.50922 -14.28022 -13.93299 -13.70205 -13.66200 -13.43837 -13.11094 -12.91768 -12.78049 -12.39858 -12.05554 -11.91630 -11.69792 -11.64752 -11.49502 -11.21937 -11.02667 -10.97627 -10.85273 -10.74611 -10.51064 -10.25957 -9.21817 -8.41007 -8.15877 -6.44800 0.27304 0.40846 0.73869 1.31369 1.36727 1.44491 1.45823 1.76192 1.95097 2.28100 2.84851 2.88243 2.92537 3.24470 3.43922 3.88660 3.92701 4.02136 4.16330 4.19317 4.32481 4.39196 4.40723 4.49042 4.50914 4.54547 4.54799 4.63670 4.65066 4.89657 4.96640 4.99082 5.13367 5.26631 5.33217 5.37765 5.42562 5.50125 5.62982 5.81620 6.06515 6.07389 6.55560 6.72934 6.79424 6.88251 7.16697 7.31733 8.74506 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014982 B = 0.002563 C = 0.002248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1868.472535 B =10920.382148 C =12451.035189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.062 3.938 3 H 0.052 0.948 4 C -0.527 4.527 5 H 0.040 0.960 6 C 0.036 3.964 7 N -0.928 5.928 8 Si 0.927 3.073 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.227 1.227 12 S -0.152 6.152 13 C -0.124 4.124 14 C -0.129 4.129 15 C -0.120 4.120 16 C -0.105 4.105 17 C -0.131 4.131 18 C 0.168 3.832 19 N -0.673 5.673 20 C 0.705 3.295 21 O -0.602 6.602 22 N -0.725 5.725 23 C 0.113 3.887 24 C 0.101 3.899 25 H 0.102 0.898 26 O -0.568 6.568 27 C 0.049 3.951 28 O -0.590 6.590 29 H 0.058 0.942 30 H 0.053 0.947 31 H 0.050 0.950 32 H 0.272 0.728 33 H 0.124 0.876 34 H 0.151 0.849 35 H 0.156 0.844 36 H 0.151 0.849 37 H 0.414 0.586 38 H 0.411 0.589 39 H 0.082 0.918 40 H 0.081 0.919 41 H 0.389 0.611 42 H 0.073 0.927 43 H 0.073 0.927 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 -1.191 26.893 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.067 4.067 3 H 0.070 0.930 4 C -0.565 4.565 5 H 0.058 0.942 6 C -0.166 4.166 7 N -0.565 5.565 8 Si 0.750 3.250 9 H -0.199 1.199 10 H -0.204 1.204 11 H -0.150 1.150 12 S 0.094 5.906 13 C -0.239 4.239 14 C -0.154 4.154 15 C -0.141 4.141 16 C -0.126 4.126 17 C -0.153 4.153 18 C 0.066 3.934 19 N -0.319 5.319 20 C 0.406 3.594 21 O -0.482 6.482 22 N -0.381 5.381 23 C -0.011 4.011 24 C 0.041 3.959 25 H 0.119 0.881 26 O -0.375 6.375 27 C -0.029 4.029 28 O -0.399 6.399 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.081 0.919 33 H 0.142 0.858 34 H 0.169 0.831 35 H 0.173 0.827 36 H 0.168 0.832 37 H 0.251 0.749 38 H 0.247 0.753 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.239 0.761 42 H 0.091 0.909 43 H 0.092 0.908 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 0.458 -2.174 26.331 26.425 hybrid contribution -0.320 1.180 -0.659 1.389 sum 0.138 -0.994 25.672 25.691 Atomic orbital electron populations 1.22351 0.95188 1.01598 1.00746 1.21134 0.96164 0.97440 0.91963 0.92991 1.20451 1.36706 1.10070 0.89291 0.94176 1.25673 0.94307 1.01929 0.94697 1.70068 1.49329 1.37638 0.99508 0.86121 0.78927 0.80108 0.79878 1.19865 1.20427 1.15007 1.84961 1.76770 1.29114 0.99766 1.21684 1.07420 0.99718 0.95102 1.21280 1.00741 0.92682 1.00649 1.21328 1.00458 1.00075 0.92191 1.21378 0.98445 0.95781 0.96983 1.21559 1.01104 0.93130 0.99536 1.17170 0.99622 0.85327 0.91274 1.42621 1.56580 1.18519 1.14187 1.15924 0.80363 0.81512 0.81628 1.90824 1.43122 1.62992 1.51231 1.44916 1.52073 1.23320 1.17783 1.21886 1.01429 0.94690 0.83137 1.22078 0.81276 0.93640 0.98872 0.88052 1.86636 1.22786 1.71024 1.57086 1.22771 0.97851 0.85544 0.96751 1.86481 1.75962 1.32247 1.45206 0.92314 0.92789 0.93045 0.91885 0.85795 0.83113 0.82673 0.83187 0.74924 0.75319 0.89955 0.90098 0.76119 0.90908 0.90850 0.75025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.80 8.13 71.98 0.58 -5.21 16 2 C 0.06 2.81 1.51 29.85 0.05 2.85 16 3 H 0.05 2.31 5.36 -2.39 -0.01 2.30 16 4 C -0.53 -29.18 9.01 25.60 0.23 -28.95 16 5 H 0.04 2.51 7.96 -2.91 -0.02 2.48 16 6 C 0.04 1.97 5.31 84.66 0.45 2.42 16 7 N -0.93 -55.62 13.96 21.45 0.30 -55.32 16 8 Si 0.93 41.00 25.77 68.60 1.77 42.77 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 11 H -0.23 -8.93 5.56 99.48 0.55 -8.38 16 12 S -0.15 -6.16 19.89 -56.49 -1.12 -7.28 16 13 C -0.12 -4.37 6.08 22.71 0.14 -4.23 16 14 C -0.13 -4.21 8.15 22.39 0.18 -4.03 16 15 C -0.12 -3.12 10.04 22.28 0.22 -2.89 16 16 C -0.10 -2.59 10.04 22.29 0.22 -2.36 16 17 C -0.13 -3.85 8.76 22.37 0.20 -3.66 16 18 C 0.17 5.43 6.49 38.20 0.25 5.68 16 19 N -0.67 -19.29 5.22 -316.67 -1.65 -20.95 16 20 C 0.71 18.75 8.40 179.05 1.50 20.25 16 21 O -0.60 -18.81 13.35 -4.01 -0.05 -18.87 16 22 N -0.73 -13.69 5.51 -478.53 -2.64 -16.33 16 23 C 0.11 1.54 5.31 86.38 0.46 2.00 16 24 C 0.10 1.23 3.28 30.60 0.10 1.33 16 25 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 26 O -0.57 -8.37 13.25 -144.34 -1.91 -10.29 16 27 C 0.05 0.41 6.68 71.98 0.48 0.89 16 28 O -0.59 -7.20 13.62 -144.34 -1.97 -9.17 16 29 H 0.06 2.13 6.15 -2.38 -0.01 2.12 16 30 H 0.05 2.24 5.06 -2.39 -0.01 2.23 16 31 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 32 H 0.27 15.13 8.31 -92.70 -0.77 14.36 16 33 H 0.12 4.19 4.87 -2.91 -0.01 4.18 16 34 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 35 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 36 H 0.15 4.46 5.56 -2.91 -0.02 4.45 16 37 H 0.41 11.25 7.59 -92.71 -0.70 10.54 16 38 H 0.41 6.88 8.49 -92.71 -0.79 6.09 16 39 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.39 3.01 9.05 -74.05 -0.67 2.34 16 42 H 0.07 0.32 8.14 -2.39 -0.02 0.30 16 43 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 44 H 0.40 1.13 9.12 -74.06 -0.68 0.46 16 Total: -1.00 -74.60 369.99 -4.11 -78.71 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -1.90 Total: 32.62 kcal Atomic # 6 Polarization: -20.98 SS G_CDS: 5.07 Total: -15.91 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -3.99 Total: -92.59 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: -3.93 Total: -38.32 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 1.77 Total: 42.77 kcal Atomic # 16 Polarization: -6.16 SS G_CDS: -1.12 Total: -7.28 kcal Total: -74.60 -4.11 -78.71 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271509326.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.226 kcal (2) G-P(sol) polarization free energy of solvation -74.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds