Wall clock time and date at job start Sat Apr 11 2020 05:56:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47315 * 2 1 4 4 C 1.50700 * 109.46826 * 119.99922 * 2 1 3 5 5 H 1.08006 * 120.00028 * 120.00345 * 4 2 1 6 6 C 1.37874 * 120.00208 * 299.99784 * 4 2 1 7 7 N 1.31522 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00141 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47234 * 60.00218 * 8 6 4 10 10 H 1.48509 * 109.47061 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47318 * 300.00010 * 8 6 4 12 12 S 1.81402 * 109.47218 * 239.99969 * 2 1 3 13 13 C 1.76196 * 102.99915 * 169.61154 * 12 2 1 14 14 C 1.38773 * 120.10318 * 4.48802 * 13 12 2 15 15 C 1.38213 * 119.98886 * 179.97438 * 14 13 12 16 16 C 1.38292 * 120.19512 * 0.02562 * 15 14 13 17 17 C 1.38262 * 120.20476 * 359.74517 * 16 15 14 18 18 C 1.38629 * 120.00978 * 0.50855 * 17 16 15 19 19 N 1.40193 * 120.09609 * 179.77220 * 18 17 16 20 20 C 1.34773 * 120.00497 * 34.53079 * 19 18 17 21 21 O 1.21601 * 119.99564 * 355.75241 * 20 19 18 22 22 N 1.34766 * 120.00416 * 175.75749 * 20 19 18 23 23 C 1.46503 * 120.00456 * 180.27091 * 22 20 19 24 24 C 1.52993 * 109.47417 * 179.72283 * 23 22 20 25 25 H 1.08995 * 109.47287 * 305.00416 * 24 23 22 26 26 O 1.42895 * 109.47044 * 65.00376 * 24 23 22 27 27 C 1.53009 * 109.46941 * 185.00245 * 24 23 22 28 28 O 1.42900 * 109.46902 * 175.00157 * 27 24 23 29 29 H 1.08998 * 109.47596 * 305.14312 * 1 2 3 30 30 H 1.09000 * 109.47155 * 65.14476 * 1 2 3 31 31 H 1.09002 * 109.47292 * 185.13762 * 1 2 3 32 32 H 0.96999 * 120.00011 * 179.97438 * 7 6 4 33 33 H 1.07996 * 120.01019 * 0.02562 * 14 13 12 34 34 H 1.07998 * 119.89954 * 179.97438 * 15 14 13 35 35 H 1.07995 * 119.89196 * 179.97438 * 16 15 14 36 36 H 1.07996 * 119.99453 * 180.27651 * 17 16 15 37 37 H 0.97009 * 119.99410 * 214.52883 * 19 18 17 38 38 H 0.97002 * 120.00127 * 359.97438 * 22 20 19 39 39 H 1.09000 * 109.46858 * 299.73129 * 23 22 20 40 40 H 1.09007 * 109.46554 * 59.72115 * 23 22 20 41 41 H 0.96704 * 114.00506 * 59.99890 * 26 24 23 42 42 H 1.08999 * 109.46860 * 294.99826 * 27 24 23 43 43 H 1.08993 * 109.46904 * 54.99982 * 27 24 23 44 44 H 0.96698 * 113.99716 * 179.97438 * 28 27 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4827 7 7 0.9427 0.8297 2.6034 8 14 2.3223 -1.1195 4.0079 9 1 3.8073 -1.1189 4.0078 10 1 1.8267 -0.4198 5.2205 11 1 1.8279 -2.5198 4.0082 12 16 2.1347 -0.8551 -1.4811 13 6 3.8589 -0.4924 -1.4720 14 6 4.4169 0.2096 -0.4130 15 6 5.7698 0.4924 -0.4080 16 6 6.5708 0.0782 -1.4564 17 6 6.0241 -0.6259 -2.5134 18 6 4.6673 -0.9096 -2.5297 19 7 4.1103 -1.6192 -3.6028 20 6 4.8240 -2.5843 -4.2155 21 8 5.9777 -2.7873 -3.8891 22 7 4.2593 -3.3243 -5.1900 23 6 5.0333 -4.3774 -5.8520 24 6 4.1626 -5.0645 -6.9058 25 1 3.2460 -5.4264 -6.4400 26 8 3.8363 -4.1305 -7.9368 27 6 4.9279 -6.2439 -7.5096 28 8 4.0746 -6.9555 -8.4082 29 1 -0.3634 0.5915 0.8403 30 1 -0.3633 0.4320 -0.9325 31 1 -0.3634 -1.0235 0.0920 32 1 0.7081 1.1609 3.4844 33 1 3.7943 0.5342 0.4076 34 1 6.2024 1.0392 0.4167 35 1 7.6272 0.3021 -1.4477 36 1 6.6536 -0.9516 -3.3282 37 1 3.2110 -1.4155 -3.9042 38 1 3.3389 -3.1626 -5.4502 39 1 5.9073 -3.9381 -6.3330 40 1 5.3557 -5.1107 -5.1126 41 1 4.6057 -3.7664 -8.3957 42 1 5.7979 -5.8732 -8.0515 43 1 5.2539 -6.9118 -6.7124 44 1 4.4950 -7.7178 -8.8291 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271509337.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:22 Heat of formation + Delta-G solvation = -130.599248 kcal Electronic energy + Delta-G solvation = -26708.367515 eV Core-core repulsion = 22750.828730 eV Total energy + Delta-G solvation = -3957.538785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.68657 -39.80838 -39.03663 -36.92579 -36.24348 -35.67800 -35.40122 -32.44049 -31.78582 -31.57892 -30.06201 -27.37373 -26.51446 -24.15128 -23.81839 -22.95697 -22.77101 -21.72875 -19.60066 -18.99918 -18.52048 -18.27275 -17.86002 -17.57456 -17.26685 -16.97276 -16.53189 -16.27208 -15.96538 -15.52820 -15.25662 -15.03044 -14.93936 -14.88299 -14.56664 -14.52259 -13.98604 -13.65918 -13.47332 -13.40923 -13.38122 -12.90585 -12.84559 -12.58316 -12.37243 -12.26708 -11.90903 -11.83267 -11.51079 -11.33001 -11.19671 -11.06045 -10.97365 -10.87024 -10.52316 -10.42987 -10.23658 -9.21420 -8.30472 -7.98272 -6.33982 0.31836 0.49192 0.94019 1.40444 1.41316 1.48510 1.49912 1.86671 2.00922 2.39252 2.88526 2.91721 3.08667 3.28038 3.44596 3.91796 4.02438 4.06793 4.18150 4.23619 4.40948 4.43969 4.54486 4.60147 4.61387 4.64539 4.68154 4.84260 4.89453 4.99454 5.06336 5.27832 5.31350 5.34674 5.39995 5.58054 5.61152 5.68228 5.77689 5.86132 6.04394 6.12523 6.67508 6.74612 6.85687 6.88278 7.32152 7.38544 8.83694 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014741 B = 0.002607 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.960823 B =10739.526175 C =11494.816335 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.092 3.908 3 H 0.028 0.972 4 C -0.524 4.524 5 H 0.051 0.949 6 C 0.032 3.968 7 N -0.907 5.907 8 Si 0.949 3.051 9 H -0.273 1.273 10 H -0.279 1.279 11 H -0.275 1.275 12 S -0.173 6.173 13 C -0.104 4.104 14 C -0.121 4.121 15 C -0.126 4.126 16 C -0.110 4.110 17 C -0.118 4.118 18 C 0.160 3.840 19 N -0.672 5.672 20 C 0.705 3.295 21 O -0.609 6.609 22 N -0.724 5.724 23 C 0.113 3.887 24 C 0.103 3.897 25 H 0.102 0.898 26 O -0.566 6.566 27 C 0.049 3.951 28 O -0.589 6.589 29 H 0.078 0.922 30 H 0.041 0.959 31 H 0.035 0.965 32 H 0.267 0.733 33 H 0.128 0.872 34 H 0.140 0.860 35 H 0.154 0.846 36 H 0.142 0.858 37 H 0.414 0.586 38 H 0.411 0.589 39 H 0.081 0.919 40 H 0.076 0.924 41 H 0.389 0.611 42 H 0.073 0.927 43 H 0.071 0.929 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.643 -9.036 -19.074 23.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.036 4.036 3 H 0.046 0.954 4 C -0.563 4.563 5 H 0.070 0.930 6 C -0.170 4.170 7 N -0.545 5.545 8 Si 0.775 3.225 9 H -0.198 1.198 10 H -0.205 1.205 11 H -0.200 1.200 12 S 0.073 5.927 13 C -0.220 4.220 14 C -0.145 4.145 15 C -0.147 4.147 16 C -0.131 4.131 17 C -0.140 4.140 18 C 0.059 3.941 19 N -0.320 5.320 20 C 0.405 3.595 21 O -0.489 6.489 22 N -0.380 5.380 23 C -0.011 4.011 24 C 0.043 3.957 25 H 0.120 0.880 26 O -0.374 6.374 27 C -0.029 4.029 28 O -0.398 6.398 29 H 0.097 0.903 30 H 0.060 0.940 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.146 0.854 34 H 0.158 0.842 35 H 0.172 0.828 36 H 0.159 0.841 37 H 0.252 0.748 38 H 0.248 0.752 39 H 0.099 0.901 40 H 0.095 0.905 41 H 0.239 0.761 42 H 0.091 0.909 43 H 0.090 0.910 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 8.762 -9.511 -19.123 23.085 hybrid contribution 0.807 0.268 1.566 1.781 sum 9.569 -9.244 -17.557 22.029 Atomic orbital electron populations 1.21494 0.94558 1.00657 1.00775 1.20892 0.96448 0.95681 0.90623 0.95397 1.21250 1.32042 1.12544 0.90442 0.93044 1.25566 0.94862 0.95437 1.01174 1.69948 1.36543 1.23354 1.24645 0.85734 0.78905 0.78824 0.79054 1.19798 1.20459 1.20042 1.84161 1.00288 1.70406 1.37845 1.21558 0.97670 1.05837 0.96921 1.21571 0.96961 0.98636 0.97327 1.21310 0.92652 1.00989 0.99717 1.21315 1.00909 0.97701 0.93144 1.21231 0.92973 0.99035 1.00793 1.17076 0.92735 0.97087 0.87203 1.42453 1.19512 1.36766 1.33241 1.15942 0.84454 0.79211 0.79867 1.90880 1.17225 1.72566 1.68195 1.44834 1.17500 1.37261 1.38433 1.21867 0.94453 0.89541 0.95288 1.22043 0.98900 0.87869 0.86841 0.87990 1.86624 1.38209 1.61198 1.51347 1.22765 0.92575 0.93895 0.93704 1.86475 1.43216 1.47575 1.62530 0.90334 0.93983 0.94556 0.92379 0.85387 0.84246 0.82801 0.84074 0.74803 0.75239 0.90078 0.90538 0.76111 0.90913 0.91036 0.75035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.32 8.90 71.98 0.64 -4.68 16 2 C 0.09 4.44 2.02 29.85 0.06 4.50 16 3 H 0.03 1.47 7.34 -2.39 -0.02 1.46 16 4 C -0.52 -27.54 6.47 25.60 0.17 -27.37 16 5 H 0.05 2.82 7.71 -2.91 -0.02 2.80 16 6 C 0.03 1.66 5.30 84.65 0.45 2.11 16 7 N -0.91 -48.96 11.38 21.45 0.24 -48.72 16 8 Si 0.95 42.44 29.54 68.60 2.03 44.46 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 12 S -0.17 -7.19 20.11 -56.49 -1.14 -8.33 16 13 C -0.10 -4.24 6.11 22.70 0.14 -4.11 16 14 C -0.12 -5.03 8.85 22.39 0.20 -4.83 16 15 C -0.13 -4.32 10.04 22.28 0.22 -4.10 16 16 C -0.11 -3.34 10.04 22.29 0.22 -3.11 16 17 C -0.12 -3.96 8.70 22.37 0.19 -3.77 16 18 C 0.16 5.77 6.32 38.20 0.24 6.01 16 19 N -0.67 -20.30 5.03 -316.67 -1.59 -21.90 16 20 C 0.70 20.20 8.41 179.06 1.51 21.71 16 21 O -0.61 -21.00 13.76 -4.03 -0.06 -21.06 16 22 N -0.72 -14.52 5.51 -478.53 -2.64 -17.16 16 23 C 0.11 1.70 5.31 86.38 0.46 2.16 16 24 C 0.10 1.32 3.28 30.59 0.10 1.42 16 25 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 26 O -0.57 -8.30 13.25 -144.34 -1.91 -10.22 16 27 C 0.05 0.44 6.68 71.99 0.48 0.92 16 28 O -0.59 -7.37 13.62 -144.34 -1.97 -9.33 16 29 H 0.08 3.94 6.22 -2.39 -0.01 3.93 16 30 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 31 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.27 13.77 8.31 -92.71 -0.77 13.00 16 33 H 0.13 6.08 4.82 -2.91 -0.01 6.06 16 34 H 0.14 4.08 8.06 -2.91 -0.02 4.06 16 35 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 36 H 0.14 4.61 6.19 -2.91 -0.02 4.59 16 37 H 0.41 11.13 7.99 -92.70 -0.74 10.39 16 38 H 0.41 7.02 8.49 -92.71 -0.79 6.23 16 39 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 41 H 0.39 3.01 9.05 -74.05 -0.67 2.34 16 42 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 43 H 0.07 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.40 1.27 9.12 -74.06 -0.68 0.59 16 Total: -1.00 -69.00 378.29 -3.74 -72.74 By element: Atomic # 1 Polarization: 34.43 SS G_CDS: -1.79 Total: 32.64 kcal Atomic # 6 Polarization: -18.22 SS G_CDS: 5.08 Total: -13.13 kcal Atomic # 7 Polarization: -83.79 SS G_CDS: -3.98 Total: -87.77 kcal Atomic # 8 Polarization: -36.67 SS G_CDS: -3.93 Total: -40.61 kcal Atomic # 14 Polarization: 42.44 SS G_CDS: 2.03 Total: 44.46 kcal Atomic # 16 Polarization: -7.19 SS G_CDS: -1.14 Total: -8.33 kcal Total: -69.00 -3.74 -72.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271509337.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.862 kcal (2) G-P(sol) polarization free energy of solvation -68.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds