Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47437 * 2 1 4 4 S 1.65599 * 120.00418 * 164.99857 * 3 2 1 5 5 O 1.42100 * 106.40241 * 311.46108 * 4 3 2 6 6 O 1.42096 * 106.40379 * 178.53729 * 4 3 2 7 7 C 1.76199 * 107.21658 * 65.00023 * 4 3 2 8 8 C 1.38238 * 120.00251 * 269.72679 * 7 4 3 9 9 C 1.38228 * 120.00121 * 179.76592 * 8 7 4 10 10 C 1.38234 * 120.00010 * 0.50740 * 9 8 7 11 11 C 1.50706 * 119.99834 * 179.72215 * 10 9 8 12 12 C 1.50701 * 109.47197 * 270.02419 * 11 10 9 13 13 O 1.21282 * 119.99907 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99886 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99943 * 359.97438 * 14 12 11 16 16 C 1.46493 * 119.99928 * 179.97438 * 14 12 11 17 17 C 1.50700 * 109.47211 * 90.00145 * 16 14 12 18 18 H 1.08004 * 119.99779 * 359.97438 * 17 16 14 19 19 C 1.37880 * 120.00367 * 180.02562 * 17 16 14 20 20 N 1.31514 * 119.99887 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00204 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46863 * 59.99678 * 21 19 17 23 23 H 1.48493 * 109.47161 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47307 * 299.99958 * 21 19 17 25 25 C 1.38229 * 119.99860 * 359.74632 * 10 9 8 26 26 C 1.38234 * 120.00019 * 90.00010 * 7 4 3 27 27 H 1.08992 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46889 * 300.00282 * 1 2 3 29 29 H 1.09005 * 109.47067 * 59.99917 * 1 2 3 30 30 H 1.09005 * 109.47495 * 240.00319 * 2 1 3 31 31 H 1.08996 * 109.47189 * 119.99817 * 2 1 3 32 32 H 0.97001 * 119.99713 * 345.00063 * 3 2 1 33 33 H 1.08004 * 119.99572 * 0.02562 * 8 7 4 34 34 H 1.08004 * 120.00393 * 180.23620 * 9 8 7 35 35 H 1.08991 * 109.47127 * 30.02677 * 11 10 9 36 36 H 1.09005 * 109.46919 * 150.02736 * 11 10 9 37 37 H 1.09006 * 109.47287 * 90.00200 * 15 14 12 38 38 H 1.08997 * 109.47278 * 210.00101 * 15 14 12 39 39 H 1.08998 * 109.47545 * 330.00245 * 15 14 12 40 40 H 1.09000 * 109.47175 * 209.99918 * 16 14 12 41 41 H 1.08999 * 109.47615 * 329.99739 * 16 14 12 42 42 H 0.96995 * 120.00185 * 180.02562 * 20 19 17 43 43 H 1.08005 * 119.99920 * 179.97438 * 25 10 9 44 44 H 1.07999 * 120.00005 * 0.02562 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.8849 0.9833 1.5647 6 8 3.7651 3.1064 0.2512 7 6 4.5894 0.9737 -0.8932 8 6 5.0395 -0.3263 -0.7575 9 6 5.8114 -0.8978 -1.7517 10 6 6.1420 -0.1659 -2.8768 11 6 6.9887 -0.7870 -3.9578 12 6 8.4444 -0.5257 -3.6680 13 8 8.7629 0.1026 -2.6807 14 7 9.3922 -0.9901 -4.5061 15 6 9.0074 -1.7495 -5.6984 16 6 10.8071 -0.7356 -4.2247 17 6 11.3610 -1.8553 -3.3818 18 1 10.7226 -2.6744 -3.0849 19 6 12.6824 -1.8337 -2.9886 20 7 13.4596 -0.8361 -3.3496 21 14 13.3687 -3.2212 -1.9431 22 1 13.2331 -4.5061 -2.6752 23 1 14.8030 -2.9633 -1.6580 24 1 12.6155 -3.2976 -0.6656 25 6 5.6963 1.1358 -3.0101 26 6 4.9200 1.7056 -2.0183 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.4150 2.1089 -0.2174 33 1 4.7846 -0.8968 0.1234 34 1 6.1599 -1.9148 -1.6474 35 1 6.8111 -1.8619 -3.9858 36 1 6.7259 -0.3500 -4.9212 37 1 8.8624 -1.0648 -6.5341 38 1 9.7944 -2.4621 -5.9450 39 1 8.0791 -2.2864 -5.5034 40 1 11.3597 -0.6795 -5.1626 41 1 10.9069 0.2074 -3.6873 42 1 14.3892 -0.8210 -3.0734 43 1 5.9549 1.7078 -3.8889 44 1 4.5724 2.7228 -2.1221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273534709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -86.458202 kcal Electronic energy + Delta-G solvation = -26940.056760 eV Core-core repulsion = 22984.432074 eV Total energy + Delta-G solvation = -3955.624686 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.83991 -38.50143 -37.41157 -36.22708 -35.98228 -34.89367 -33.14937 -32.50449 -31.11147 -30.11745 -28.74886 -27.22412 -25.69726 -23.38664 -23.21534 -22.88163 -21.77433 -19.78115 -18.58575 -18.20931 -17.50119 -16.64368 -16.52772 -16.39301 -15.86992 -15.69301 -15.20342 -14.99188 -14.83762 -14.46599 -14.37833 -14.02265 -13.60231 -13.52727 -13.12736 -12.77971 -12.53935 -12.36258 -12.30251 -12.27573 -12.18319 -12.09924 -12.05540 -11.89798 -11.79316 -11.78008 -11.22903 -11.19995 -10.93157 -10.87512 -10.58248 -10.18962 -9.87974 -9.68947 -9.39145 -9.05827 -8.87501 -8.45993 -7.71731 -6.07076 -4.12267 0.21554 0.75108 1.29081 2.79266 3.28945 3.30892 3.35004 3.36680 3.39265 3.62130 3.98914 4.17452 4.42510 4.51541 4.62492 4.64764 4.69965 4.81671 4.87859 5.11292 5.14220 5.21046 5.24744 5.28239 5.43993 5.45798 5.46833 5.53665 5.58423 5.71287 5.73172 5.84439 5.90967 5.99496 6.08269 6.14310 6.44309 6.60422 6.78631 6.99328 7.39403 7.47150 7.88469 8.19313 8.32746 8.85076 9.01202 9.52851 11.01069 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017480 B = 0.002432 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.434373 B =11512.113207 C =11961.634935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.110 3.890 3 N -1.120 6.120 4 S 2.698 3.302 5 O -0.958 6.958 6 O -0.960 6.960 7 C -0.683 4.683 8 C -0.020 4.020 9 C -0.126 4.126 10 C 0.006 3.994 11 C -0.115 4.115 12 C 0.505 3.495 13 O -0.532 6.532 14 N -0.602 5.602 15 C 0.082 3.918 16 C 0.246 3.754 17 C -0.528 4.528 18 H 0.056 0.944 19 C 0.061 3.939 20 N -0.894 5.894 21 Si 0.899 3.101 22 H -0.277 1.277 23 H -0.286 1.286 24 H -0.276 1.276 25 C -0.128 4.128 26 C -0.018 4.018 27 H 0.072 0.928 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.081 0.919 32 H 0.417 0.583 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.103 0.897 36 H 0.101 0.899 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.057 0.943 40 H 0.033 0.967 41 H 0.044 0.956 42 H 0.264 0.736 43 H 0.131 0.869 44 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.271 0.214 -1.156 27.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.016 4.016 3 N -0.880 5.880 4 S 2.789 3.211 5 O -0.948 6.948 6 O -0.951 6.951 7 C -0.771 4.771 8 C -0.040 4.040 9 C -0.144 4.144 10 C 0.005 3.995 11 C -0.156 4.156 12 C 0.291 3.709 13 O -0.409 6.409 14 N -0.335 5.335 15 C -0.062 4.062 16 C 0.127 3.873 17 C -0.567 4.567 18 H 0.074 0.926 19 C -0.141 4.141 20 N -0.533 5.533 21 Si 0.727 3.273 22 H -0.203 1.203 23 H -0.211 1.211 24 H -0.201 1.201 25 C -0.147 4.147 26 C -0.037 4.037 27 H 0.091 0.909 28 H 0.082 0.918 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.251 0.749 33 H 0.156 0.844 34 H 0.150 0.850 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.064 0.936 38 H 0.094 0.906 39 H 0.075 0.925 40 H 0.051 0.949 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.148 0.852 44 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -26.454 0.914 0.147 26.470 hybrid contribution 0.546 -0.963 -0.378 1.170 sum -25.907 -0.050 -0.232 25.908 Atomic orbital electron populations 1.21955 0.94058 1.03046 1.02741 1.21291 0.96427 0.81493 1.02404 1.55613 1.28872 1.14753 1.88777 1.01691 0.72256 0.73235 0.73924 1.93584 1.83735 1.74540 1.42900 1.93590 1.85161 1.29297 1.87007 1.30673 1.21833 1.06643 1.17978 1.20827 0.93253 0.92380 0.97500 1.21145 0.98801 1.00926 0.93572 1.19767 0.91756 0.93721 0.94270 1.20942 0.93503 1.02768 0.98343 1.20025 0.86381 0.80691 0.83795 1.90725 1.82573 1.40521 1.27052 1.48170 1.09048 1.52908 1.23349 1.21665 1.00811 0.96029 0.87714 1.19300 0.73335 0.97989 0.96718 1.21366 0.95290 1.07142 1.32895 0.92568 1.24944 0.96855 0.96231 0.96093 1.69916 1.06766 1.30868 1.45757 0.86546 0.77902 0.82002 0.80898 1.20251 1.21122 1.20137 1.21113 0.98756 0.94726 1.00063 1.20793 0.93671 0.98426 0.90840 0.90928 0.91772 0.91927 0.91556 0.90101 0.74854 0.84411 0.85036 0.87929 0.88090 0.93649 0.90634 0.92456 0.94943 0.93834 0.92598 0.85151 0.84445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.64 10.05 37.16 0.37 -0.27 16 2 C 0.11 0.64 6.94 -4.04 -0.03 0.62 16 3 N -1.12 -7.95 6.00 -10.61 -0.06 -8.02 16 4 S 2.70 30.35 5.74 -107.50 -0.62 29.74 16 5 O -0.96 -13.48 16.75 -57.17 -0.96 -14.44 16 6 O -0.96 -13.33 17.28 -57.17 -0.99 -14.32 16 7 C -0.68 -8.42 5.95 -39.58 -0.24 -8.65 16 8 C -0.02 -0.25 9.52 -39.58 -0.38 -0.63 16 9 C -0.13 -1.69 9.70 -39.59 -0.38 -2.08 16 10 C 0.01 0.08 4.37 -104.62 -0.46 -0.38 16 11 C -0.12 -1.55 4.38 -29.03 -0.13 -1.68 16 12 C 0.51 10.10 7.67 -10.99 -0.08 10.02 16 13 O -0.53 -13.33 15.61 5.56 0.09 -13.24 16 14 N -0.60 -12.36 2.86 -182.96 -0.52 -12.88 16 15 C 0.08 1.20 10.24 59.85 0.61 1.81 16 16 C 0.25 6.38 5.16 -5.20 -0.03 6.35 16 17 C -0.53 -14.92 9.39 -34.44 -0.32 -15.24 16 18 H 0.06 1.57 7.81 -52.48 -0.41 1.16 16 19 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 20 N -0.89 -26.67 13.29 55.43 0.74 -25.93 16 21 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.86 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 C -0.13 -1.67 9.70 -39.59 -0.38 -2.06 16 26 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 27 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.06 0.22 8.14 -51.93 -0.42 -0.21 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.08 0.50 7.75 -51.93 -0.40 0.10 16 32 H 0.42 2.11 8.65 -34.47 -0.30 1.81 16 33 H 0.14 1.45 7.61 -52.48 -0.40 1.05 16 34 H 0.13 1.59 8.06 -52.48 -0.42 1.16 16 35 H 0.10 1.14 7.35 -51.93 -0.38 0.76 16 36 H 0.10 1.06 8.05 -51.93 -0.42 0.64 16 37 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 39 H 0.06 0.65 6.44 -51.93 -0.33 0.31 16 40 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 41 H 0.04 1.29 7.42 -51.93 -0.39 0.90 16 42 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 44 H 0.14 1.43 7.62 -52.49 -0.40 1.03 16 LS Contribution 386.43 15.07 5.82 5.82 Total: -1.00 -38.90 386.43 -9.80 -48.70 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -6.36 Total: -1.18 kcal Atomic # 6 Polarization: -9.21 SS G_CDS: -1.92 Total: -11.13 kcal Atomic # 7 Polarization: -46.97 SS G_CDS: 0.15 Total: -46.82 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.86 Total: -42.00 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Atomic # 16 Polarization: 30.35 SS G_CDS: -0.62 Total: 29.74 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -38.90 -9.80 -48.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273534709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.760 kcal (2) G-P(sol) polarization free energy of solvation -38.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.657 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.698 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds