Wall clock time and date at job start Sat Apr 11 2020 05:56:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47437 * 2 1 4 4 S 1.65599 * 120.00418 * 164.99857 * 3 2 1 5 5 O 1.42100 * 106.40241 * 311.46108 * 4 3 2 6 6 O 1.42096 * 106.40379 * 178.53729 * 4 3 2 7 7 C 1.76199 * 107.21658 * 65.00023 * 4 3 2 8 8 C 1.38238 * 120.00251 * 269.72679 * 7 4 3 9 9 C 1.38228 * 120.00121 * 179.76592 * 8 7 4 10 10 C 1.38234 * 120.00010 * 0.50740 * 9 8 7 11 11 C 1.50706 * 119.99834 * 179.72215 * 10 9 8 12 12 C 1.50701 * 109.47197 * 270.02419 * 11 10 9 13 13 O 1.21282 * 119.99907 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99886 * 180.02562 * 12 11 10 15 15 C 1.46499 * 119.99943 * 359.97438 * 14 12 11 16 16 C 1.46493 * 119.99928 * 179.97438 * 14 12 11 17 17 C 1.50700 * 109.47211 * 90.00145 * 16 14 12 18 18 H 1.08004 * 119.99779 * 359.97438 * 17 16 14 19 19 C 1.37880 * 120.00367 * 180.02562 * 17 16 14 20 20 N 1.31514 * 119.99887 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00204 * 179.97438 * 19 17 16 22 22 H 1.48506 * 109.46863 * 59.99678 * 21 19 17 23 23 H 1.48493 * 109.47161 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47307 * 299.99958 * 21 19 17 25 25 C 1.38229 * 119.99860 * 359.74632 * 10 9 8 26 26 C 1.38234 * 120.00019 * 90.00010 * 7 4 3 27 27 H 1.08992 * 109.47009 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46889 * 300.00282 * 1 2 3 29 29 H 1.09005 * 109.47067 * 59.99917 * 1 2 3 30 30 H 1.09005 * 109.47495 * 240.00319 * 2 1 3 31 31 H 1.08996 * 109.47189 * 119.99817 * 2 1 3 32 32 H 0.97001 * 119.99713 * 345.00063 * 3 2 1 33 33 H 1.08004 * 119.99572 * 0.02562 * 8 7 4 34 34 H 1.08004 * 120.00393 * 180.23620 * 9 8 7 35 35 H 1.08991 * 109.47127 * 30.02677 * 11 10 9 36 36 H 1.09005 * 109.46919 * 150.02736 * 11 10 9 37 37 H 1.09006 * 109.47287 * 90.00200 * 15 14 12 38 38 H 1.08997 * 109.47278 * 210.00101 * 15 14 12 39 39 H 1.08998 * 109.47545 * 330.00245 * 15 14 12 40 40 H 1.09000 * 109.47175 * 209.99918 * 16 14 12 41 41 H 1.08999 * 109.47615 * 329.99739 * 16 14 12 42 42 H 0.96995 * 120.00185 * 180.02562 * 20 19 17 43 43 H 1.08005 * 119.99920 * 179.97438 * 25 10 9 44 44 H 1.07999 * 120.00005 * 0.02562 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 16 3.6004 1.7001 0.3712 5 8 3.8849 0.9833 1.5647 6 8 3.7651 3.1064 0.2512 7 6 4.5894 0.9737 -0.8932 8 6 5.0395 -0.3263 -0.7575 9 6 5.8114 -0.8978 -1.7517 10 6 6.1420 -0.1659 -2.8768 11 6 6.9887 -0.7870 -3.9578 12 6 8.4444 -0.5257 -3.6680 13 8 8.7629 0.1026 -2.6807 14 7 9.3922 -0.9901 -4.5061 15 6 9.0074 -1.7495 -5.6984 16 6 10.8071 -0.7356 -4.2247 17 6 11.3610 -1.8553 -3.3818 18 1 10.7226 -2.6744 -3.0849 19 6 12.6824 -1.8337 -2.9886 20 7 13.4596 -0.8361 -3.3496 21 14 13.3687 -3.2212 -1.9431 22 1 13.2331 -4.5061 -2.6752 23 1 14.8030 -2.9633 -1.6580 24 1 12.6155 -3.2976 -0.6656 25 6 5.6963 1.1358 -3.0101 26 6 4.9200 1.7056 -2.0183 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 1.4150 2.1089 -0.2174 33 1 4.7846 -0.8968 0.1234 34 1 6.1599 -1.9148 -1.6474 35 1 6.8111 -1.8619 -3.9858 36 1 6.7259 -0.3500 -4.9212 37 1 8.8624 -1.0648 -6.5341 38 1 9.7944 -2.4621 -5.9450 39 1 8.0791 -2.2864 -5.5034 40 1 11.3597 -0.6795 -5.1626 41 1 10.9069 0.2074 -3.6873 42 1 14.3892 -0.8210 -3.0734 43 1 5.9549 1.7078 -3.8889 44 1 4.5724 2.7228 -2.1221 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273534709.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:27 Heat of formation + Delta-G solvation = -115.639596 kcal Electronic energy + Delta-G solvation = -26941.322160 eV Core-core repulsion = 22984.432074 eV Total energy + Delta-G solvation = -3956.890086 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.08677 -39.80337 -38.41114 -37.01871 -36.77127 -36.60049 -34.81732 -34.02559 -32.06613 -30.58684 -30.36505 -28.62674 -27.20922 -25.00820 -24.01783 -23.63814 -23.02462 -20.63628 -20.06178 -19.10530 -18.71226 -18.41269 -17.87476 -17.38295 -17.23770 -16.73689 -16.51549 -16.06749 -15.81233 -15.70099 -15.48449 -15.23055 -14.56823 -14.52262 -14.34361 -14.14718 -13.83608 -13.71456 -13.46276 -13.30541 -13.29966 -13.21016 -13.05454 -12.98110 -12.76127 -12.72769 -12.56084 -12.52723 -12.40958 -12.20649 -12.14581 -11.80648 -11.73642 -10.79325 -10.66042 -10.47120 -10.12384 -10.02470 -9.42946 -8.24205 -6.39182 -0.67394 -0.24286 0.31858 1.34864 1.39494 1.46509 1.81905 1.96865 2.26351 2.37885 2.59490 2.78455 3.05505 3.27559 3.56609 3.73935 3.89975 3.91541 4.07620 4.22179 4.29985 4.31947 4.43118 4.49108 4.53741 4.57511 4.67724 4.74935 4.75832 4.96103 4.97438 5.00268 5.03912 5.12391 5.12867 5.17488 5.21962 5.38220 5.45168 5.54064 5.82008 5.84160 6.04058 6.10978 6.67955 6.77682 7.26680 7.47074 8.82652 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.017480 B = 0.002432 C = 0.002340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.434373 B =11512.113207 C =11961.634935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.099 3.901 3 N -1.103 6.103 4 S 2.720 3.280 5 O -0.988 6.988 6 O -0.989 6.989 7 C -0.687 4.687 8 C -0.030 4.030 9 C -0.139 4.139 10 C -0.015 4.015 11 C -0.098 4.098 12 C 0.496 3.504 13 O -0.596 6.596 14 N -0.610 5.610 15 C 0.075 3.925 16 C 0.259 3.741 17 C -0.542 4.542 18 H 0.055 0.945 19 C 0.005 3.995 20 N -0.930 5.930 21 Si 0.967 3.033 22 H -0.257 1.257 23 H -0.280 1.280 24 H -0.279 1.279 25 C -0.138 4.138 26 C -0.028 4.028 27 H 0.085 0.915 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.429 0.571 33 H 0.153 0.847 34 H 0.142 0.858 35 H 0.134 0.866 36 H 0.139 0.861 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.100 0.900 40 H 0.024 0.976 41 H -0.006 1.006 42 H 0.267 0.733 43 H 0.146 0.854 44 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.539 -1.539 -2.060 29.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.026 4.026 3 N -0.868 5.868 4 S 2.810 3.190 5 O -0.978 6.978 6 O -0.979 6.979 7 C -0.774 4.774 8 C -0.049 4.049 9 C -0.158 4.158 10 C -0.016 4.016 11 C -0.137 4.137 12 C 0.285 3.715 13 O -0.477 6.477 14 N -0.342 5.342 15 C -0.067 4.067 16 C 0.137 3.863 17 C -0.580 4.580 18 H 0.073 0.927 19 C -0.194 4.194 20 N -0.569 5.569 21 Si 0.791 3.209 22 H -0.182 1.182 23 H -0.205 1.205 24 H -0.205 1.205 25 C -0.156 4.156 26 C -0.048 4.048 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.266 0.734 33 H 0.170 0.830 34 H 0.159 0.841 35 H 0.152 0.848 36 H 0.157 0.843 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.119 0.881 40 H 0.042 0.958 41 H 0.012 0.988 42 H 0.076 0.924 43 H 0.164 0.836 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -28.760 -0.862 -0.814 28.784 hybrid contribution 1.175 -0.382 -0.118 1.241 sum -27.585 -1.244 -0.932 27.628 Atomic orbital electron populations 1.21961 0.92369 1.04031 1.03168 1.21551 0.97843 0.80404 1.02807 1.55254 1.27105 1.16015 1.88390 1.00879 0.72867 0.72063 0.73216 1.93543 1.84719 1.74974 1.44539 1.93544 1.86041 1.31050 1.87297 1.30840 1.21900 1.06632 1.18021 1.21077 0.93172 0.92730 0.97938 1.21403 0.98974 1.01652 0.93742 1.19951 0.92458 0.94322 0.94853 1.20910 0.87838 1.05042 0.99876 1.21174 0.88861 0.79046 0.82414 1.90691 1.84032 1.43205 1.29746 1.48190 1.06982 1.53628 1.25377 1.22001 1.02261 0.96234 0.86168 1.18733 0.77063 0.95216 0.95254 1.21677 0.95657 1.07512 1.33196 0.92700 1.25888 0.97323 0.98833 0.97330 1.70044 1.07125 1.32780 1.46975 0.85475 0.77132 0.79445 0.78818 1.18162 1.20469 1.20451 1.21408 0.98602 0.94749 1.00867 1.21080 0.93631 0.99246 0.90804 0.89654 0.91830 0.91044 0.90446 0.90578 0.73406 0.82986 0.84068 0.84793 0.84323 0.90896 0.91726 0.88142 0.95818 0.98770 0.92424 0.83597 0.82883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 10.05 71.98 0.72 -0.18 16 2 C 0.10 0.99 6.94 86.38 0.60 1.59 16 3 N -1.10 -14.14 6.00 -187.49 -1.12 -15.26 16 4 S 2.72 59.88 5.74 -56.49 -0.32 59.55 16 5 O -0.99 -27.70 16.75 -128.00 -2.14 -29.85 16 6 O -0.99 -27.24 17.28 -128.00 -2.21 -29.45 16 7 C -0.69 -16.44 5.95 22.27 0.13 -16.31 16 8 C -0.03 -0.73 9.52 22.27 0.21 -0.52 16 9 C -0.14 -3.58 9.70 22.27 0.22 -3.37 16 10 C -0.02 -0.40 4.37 -19.87 -0.09 -0.48 16 11 C -0.10 -2.34 4.38 29.10 0.13 -2.21 16 12 C 0.50 19.58 7.67 87.66 0.67 20.25 16 13 O -0.60 -30.78 15.61 -3.03 -0.05 -30.82 16 14 N -0.61 -24.78 2.86 -851.15 -2.43 -27.21 16 15 C 0.08 2.00 10.24 127.77 1.31 3.31 16 16 C 0.26 13.93 5.16 85.63 0.44 14.37 16 17 C -0.54 -31.18 9.39 25.60 0.24 -30.94 16 18 H 0.05 3.09 7.81 -2.91 -0.02 3.07 16 19 C 0.01 0.30 5.46 84.66 0.46 0.76 16 20 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 21 Si 0.97 45.12 29.54 68.60 2.03 47.14 16 22 H -0.26 -11.12 7.11 99.48 0.71 -10.42 16 23 H -0.28 -12.66 7.11 99.48 0.71 -11.96 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.36 16 25 C -0.14 -3.43 9.70 22.27 0.22 -3.21 16 26 C -0.03 -0.68 9.52 22.27 0.21 -0.47 16 27 H 0.08 0.31 8.14 -2.39 -0.02 0.29 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.07 0.30 8.14 -2.38 -0.02 0.29 16 30 H 0.08 0.62 8.14 -2.38 -0.02 0.60 16 31 H 0.08 0.85 7.75 -2.39 -0.02 0.83 16 32 H 0.43 3.62 8.65 -96.74 -0.84 2.78 16 33 H 0.15 3.11 7.61 -2.91 -0.02 3.09 16 34 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.13 2.38 7.35 -2.39 -0.02 2.36 16 36 H 0.14 2.29 8.05 -2.38 -0.02 2.27 16 37 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.06 1.87 8.07 -2.39 -0.02 1.85 16 39 H 0.10 1.81 6.44 -2.39 -0.02 1.79 16 40 H 0.02 1.29 8.07 -2.39 -0.02 1.27 16 41 H -0.01 -0.37 7.42 -2.39 -0.02 -0.39 16 42 H 0.27 15.35 8.31 -92.71 -0.77 14.58 16 43 H 0.15 3.02 8.06 -2.91 -0.02 3.00 16 44 H 0.15 3.04 7.62 -2.91 -0.02 3.02 16 Total: -1.00 -88.45 386.43 -0.32 -88.77 By element: Atomic # 1 Polarization: 10.91 SS G_CDS: 0.18 Total: 11.09 kcal Atomic # 6 Polarization: -22.89 SS G_CDS: 5.48 Total: -17.41 kcal Atomic # 7 Polarization: -95.75 SS G_CDS: -3.27 Total: -99.02 kcal Atomic # 8 Polarization: -85.72 SS G_CDS: -4.40 Total: -90.12 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 2.03 Total: 47.14 kcal Atomic # 16 Polarization: 59.88 SS G_CDS: -0.32 Total: 59.55 kcal Total: -88.45 -0.32 -88.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273534709.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.868 kcal (2) G-P(sol) polarization free energy of solvation -88.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds