Wall clock time and date at job start Sat Apr 11 2020 05:56:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46504 * 109.47095 * 2 1 4 4 C 1.46505 * 119.99466 * 85.00389 * 3 2 1 5 5 C 1.50694 * 109.47304 * 85.00335 * 4 3 2 6 6 H 1.08010 * 119.99993 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00261 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00241 * 179.97438 * 7 5 4 9 9 Si 1.86805 * 120.00044 * 359.97438 * 7 5 4 10 10 H 1.48506 * 109.46808 * 89.99991 * 9 7 5 11 11 H 1.48495 * 109.47183 * 210.00419 * 9 7 5 12 12 H 1.48500 * 109.46734 * 330.00295 * 9 7 5 13 13 S 1.65598 * 120.00320 * 265.28035 * 3 2 1 14 14 O 1.42099 * 106.40034 * 23.26345 * 13 3 2 15 15 O 1.42092 * 106.40487 * 156.18733 * 13 3 2 16 16 C 1.76206 * 107.21553 * 269.72552 * 13 3 2 17 17 C 1.38363 * 119.85042 * 269.72642 * 16 13 3 18 18 C 1.37958 * 120.14022 * 179.72548 * 17 16 13 19 19 C 1.39574 * 119.85182 * 0.54432 * 18 17 16 20 20 C 1.47850 * 120.13998 * 179.70177 * 19 18 17 21 21 O 1.21562 * 119.99613 * 148.13466 * 20 19 18 22 22 N 1.34773 * 120.00549 * 328.13931 * 20 19 18 23 23 C 1.46498 * 120.00018 * 184.28989 * 22 20 19 24 24 C 1.46500 * 119.99584 * 4.27881 * 22 20 19 25 25 C 1.39575 * 119.71574 * 359.72870 * 19 18 17 26 26 C 1.37955 * 119.84837 * 0.02562 * 25 19 18 27 27 H 1.09000 * 109.47195 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46626 * 299.99284 * 1 2 3 29 29 H 1.08996 * 109.47125 * 59.99612 * 1 2 3 30 30 H 1.09000 * 109.46626 * 240.00716 * 2 1 3 31 31 H 1.08996 * 109.47125 * 120.00388 * 2 1 3 32 32 H 1.09004 * 109.46460 * 204.99853 * 4 3 2 33 33 H 1.09000 * 109.47275 * 324.99625 * 4 3 2 34 34 H 0.97004 * 120.00048 * 179.97438 * 8 7 5 35 35 H 1.08000 * 119.92698 * 359.97438 * 17 16 13 36 36 H 1.08006 * 120.07236 * 180.25294 * 18 17 16 37 37 H 1.08996 * 109.47577 * 89.99568 * 23 22 20 38 38 H 1.09007 * 109.46750 * 209.99759 * 23 22 20 39 39 H 1.09003 * 109.47155 * 329.99037 * 23 22 20 40 40 H 1.08999 * 109.46812 * 94.50390 * 24 22 20 41 41 H 1.09003 * 109.46897 * 214.49379 * 24 22 20 42 42 H 1.08993 * 109.47414 * 334.49721 * 24 22 20 43 43 H 1.07999 * 120.07382 * 179.97438 * 25 19 18 44 44 H 1.08007 * 119.92472 * 179.97438 * 26 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1086 1.2640 5 6 3.4948 1.7888 1.8823 6 1 4.1722 1.1111 1.3838 7 6 3.8526 2.3604 3.0849 8 7 5.0188 2.0809 3.6247 9 14 2.6809 3.5320 3.9475 10 1 1.7955 2.7641 4.8596 11 1 3.4602 4.5230 4.7321 12 1 1.8554 4.2400 2.9363 13 16 2.4057 2.1226 -1.4292 14 8 1.6807 1.4414 -2.4439 15 8 2.2940 3.5204 -1.1994 16 6 4.1111 1.8037 -1.7368 17 6 5.0718 2.6802 -1.2643 18 6 6.4090 2.4333 -1.4968 19 6 6.7912 1.3025 -2.2202 20 6 8.2222 1.0353 -2.4787 21 8 8.6220 -0.1100 -2.5578 22 7 9.0835 2.0613 -2.6265 23 6 10.4819 1.7993 -2.9756 24 6 8.6211 3.4386 -2.4383 25 6 5.8168 0.4254 -2.6988 26 6 4.4832 0.6812 -2.4550 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5137 -0.8901 31 1 1.8934 -0.5139 0.8899 32 1 2.0922 3.1802 1.0757 33 1 1.3618 1.8096 1.9454 34 1 5.2707 2.4834 4.4706 35 1 4.7743 3.5574 -0.7089 36 1 7.1582 3.1161 -1.1240 37 1 10.5903 1.7907 -4.0602 38 1 11.1143 2.5804 -2.5535 39 1 10.7819 0.8319 -2.5728 40 1 8.8183 3.7511 -1.4129 41 1 9.1507 4.0969 -3.1270 42 1 7.5504 3.4925 -2.6351 43 1 6.1060 -0.4512 -3.2595 44 1 3.7281 0.0035 -2.8252 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282187991.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:40 Heat of formation + Delta-G solvation = -53.623430 kcal Electronic energy + Delta-G solvation = -28393.569830 eV Core-core repulsion = 24439.368967 eV Total energy + Delta-G solvation = -3954.200863 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.49838 -38.26048 -36.86521 -36.25730 -35.83814 -35.40683 -32.69339 -31.77264 -31.02677 -30.28915 -28.13445 -27.21617 -26.71252 -23.50649 -22.99390 -22.65709 -21.59691 -19.95079 -18.68203 -17.54119 -17.36047 -17.00654 -16.76874 -16.46400 -16.01283 -15.66231 -14.86663 -14.66403 -14.42519 -14.24517 -13.98126 -13.58490 -13.52562 -13.33226 -12.98232 -12.91605 -12.73940 -12.65066 -12.52463 -12.43273 -12.16401 -11.98174 -11.92760 -11.63465 -11.53587 -11.19551 -11.03603 -11.01289 -10.75470 -10.61186 -10.35986 -10.18286 -9.97960 -9.64925 -9.20870 -8.95341 -8.82067 -8.69595 -8.18971 -6.19505 -4.21178 0.51960 0.95534 1.43177 2.60160 2.78532 3.21351 3.29219 3.34115 3.41258 3.71242 4.19275 4.30927 4.32282 4.60507 4.79922 4.95609 5.00890 5.07292 5.09964 5.12713 5.29755 5.36074 5.37565 5.48657 5.53191 5.58699 5.66384 5.67749 5.70996 5.97052 6.02428 6.11092 6.20087 6.20785 6.24199 6.28860 6.46219 6.56974 6.78765 6.86965 7.04443 7.08410 7.29687 7.48156 7.96286 8.36082 8.84633 9.40261 10.92569 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.010928 B = 0.004465 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2561.644294 B = 6268.850336 C = 7727.115639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.125 3.875 3 N -0.975 5.975 4 C 0.212 3.788 5 C -0.544 4.544 6 H 0.081 0.919 7 C 0.078 3.922 8 N -0.891 5.891 9 Si 0.865 3.135 10 H -0.274 1.274 11 H -0.284 1.284 12 H -0.259 1.259 13 S 2.690 3.310 14 O -0.971 6.971 15 O -0.958 6.958 16 C -0.644 4.644 17 C -0.001 4.001 18 C -0.121 4.121 19 C -0.087 4.087 20 C 0.559 3.441 21 O -0.531 6.531 22 N -0.616 5.616 23 C 0.085 3.915 24 C 0.055 3.945 25 C -0.091 4.091 26 C -0.031 4.031 27 H 0.062 0.938 28 H 0.059 0.941 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.050 0.950 33 H 0.037 0.963 34 H 0.265 0.735 35 H 0.150 0.850 36 H 0.149 0.851 37 H 0.055 0.945 38 H 0.071 0.929 39 H 0.079 0.921 40 H 0.067 0.933 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.137 0.863 44 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.215 1.336 -11.874 12.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.001 4.001 3 N -0.813 5.813 4 C 0.089 3.911 5 C -0.583 4.583 6 H 0.099 0.901 7 C -0.125 4.125 8 N -0.529 5.529 9 Si 0.691 3.309 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.183 1.183 13 S 2.779 3.221 14 O -0.961 6.961 15 O -0.948 6.948 16 C -0.729 4.729 17 C -0.020 4.020 18 C -0.140 4.140 19 C -0.090 4.090 20 C 0.348 3.652 21 O -0.408 6.408 22 N -0.350 5.350 23 C -0.057 4.057 24 C -0.087 4.087 25 C -0.110 4.110 26 C -0.051 4.051 27 H 0.081 0.919 28 H 0.078 0.922 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.104 0.896 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.168 0.832 36 H 0.166 0.834 37 H 0.074 0.926 38 H 0.090 0.910 39 H 0.098 0.902 40 H 0.085 0.915 41 H 0.089 0.911 42 H 0.114 0.886 43 H 0.155 0.845 44 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 3.041 1.251 -12.272 12.705 hybrid contribution 0.442 0.329 0.995 1.138 sum 3.483 1.581 -11.277 11.907 Atomic orbital electron populations 1.22224 0.96602 1.01778 1.02404 1.21109 0.93737 0.82219 1.02988 1.57181 1.78161 1.23339 1.22642 1.19670 0.98176 0.92501 0.80779 1.21451 1.01010 1.29298 1.06563 0.90133 1.24839 0.94962 0.95962 0.96779 1.69902 1.20599 1.43642 1.18762 0.87009 0.81674 0.81663 0.80534 1.19959 1.20923 1.18317 1.01982 0.73726 0.73659 0.72743 1.93528 1.69825 1.75706 1.57067 1.93542 1.86033 1.29964 1.85290 1.31389 1.27013 1.04352 1.10167 1.20933 0.91857 0.97393 0.91858 1.21951 0.97282 0.96617 0.98179 1.20049 0.92713 0.96306 0.99969 1.18449 0.85796 0.84652 0.76345 1.90775 1.78698 1.20922 1.50454 1.47588 1.10384 1.06920 1.70064 1.21665 0.80599 1.03080 1.00367 1.22581 1.02581 0.81675 1.01905 1.21176 0.91969 0.98385 0.99515 1.20825 0.96510 0.94269 0.93448 0.91949 0.92178 0.92398 0.91307 0.89601 0.93224 0.94542 0.92482 0.83229 0.83375 0.92616 0.90991 0.90241 0.91455 0.91055 0.88632 0.84541 0.84003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.13 2.03 6.06 -4.04 -0.02 2.01 16 3 N -0.97 -18.65 2.77 -115.66 -0.32 -18.97 16 4 C 0.21 4.68 4.51 -5.19 -0.02 4.65 16 5 C -0.54 -13.91 9.94 -34.45 -0.34 -14.25 16 6 H 0.08 2.24 8.06 -52.48 -0.42 1.81 16 7 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -25.47 13.96 55.43 0.77 -24.69 16 9 Si 0.86 19.93 27.47 -169.99 -4.67 15.26 16 10 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 13 S 2.69 50.00 5.65 -107.50 -0.61 49.39 16 14 O -0.97 -18.03 16.23 -57.17 -0.93 -18.96 16 15 O -0.96 -19.90 15.81 -57.17 -0.90 -20.80 16 16 C -0.64 -11.18 5.98 -39.49 -0.24 -11.42 16 17 C 0.00 -0.02 9.50 -39.64 -0.38 -0.40 16 18 C -0.12 -1.84 7.44 -39.19 -0.29 -2.13 16 19 C -0.09 -1.35 5.47 -104.97 -0.57 -1.93 16 20 C 0.56 8.59 7.44 -12.33 -0.09 8.50 16 21 O -0.53 -9.69 16.31 5.31 0.09 -9.60 16 22 N -0.62 -7.29 3.27 -190.64 -0.62 -7.92 16 23 C 0.09 0.80 10.49 59.85 0.63 1.42 16 24 C 0.05 0.49 8.80 59.85 0.53 1.01 16 25 C -0.09 -1.39 9.60 -39.19 -0.38 -1.76 16 26 C -0.03 -0.49 9.50 -39.64 -0.38 -0.86 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 29 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 30 H 0.07 0.99 7.61 -51.93 -0.40 0.59 16 31 H 0.09 1.41 8.11 -51.93 -0.42 0.99 16 32 H 0.05 1.13 5.97 -51.93 -0.31 0.82 16 33 H 0.04 0.78 7.54 -51.93 -0.39 0.38 16 34 H 0.27 7.15 8.31 -40.82 -0.34 6.81 16 35 H 0.15 2.55 7.60 -52.49 -0.40 2.15 16 36 H 0.15 1.85 4.80 -52.48 -0.25 1.60 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.49 8.07 -51.93 -0.42 0.07 16 39 H 0.08 0.86 7.37 -51.93 -0.38 0.48 16 40 H 0.07 0.55 7.44 -51.93 -0.39 0.17 16 41 H 0.07 0.46 8.11 -51.93 -0.42 0.04 16 42 H 0.10 0.90 4.72 -51.93 -0.25 0.65 16 43 H 0.14 1.86 7.95 -52.49 -0.42 1.44 16 44 H 0.14 1.90 7.60 -52.48 -0.40 1.50 16 LS Contribution 374.48 15.07 5.64 5.64 Total: -1.00 -33.55 374.48 -8.94 -42.50 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.12 Total: 3.36 kcal Atomic # 6 Polarization: -13.92 SS G_CDS: -1.28 Total: -15.20 kcal Atomic # 7 Polarization: -51.41 SS G_CDS: -0.17 Total: -51.58 kcal Atomic # 8 Polarization: -47.62 SS G_CDS: -1.75 Total: -49.36 kcal Atomic # 14 Polarization: 19.93 SS G_CDS: -4.67 Total: 15.26 kcal Atomic # 16 Polarization: 50.00 SS G_CDS: -0.61 Total: 49.39 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -33.55 -8.94 -42.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282187991.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.128 kcal (2) G-P(sol) polarization free energy of solvation -33.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds