Wall clock time and date at job start Sat Apr 11 2020 05:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.47181 * 2 1 4 4 C 1.50701 * 109.47061 * 239.99988 * 2 1 3 5 5 H 1.08005 * 119.99708 * 240.00309 * 4 2 1 6 6 C 1.37875 * 120.00247 * 60.27499 * 4 2 1 7 7 N 1.31519 * 119.99483 * 359.72633 * 6 4 2 8 8 Si 1.86794 * 120.00143 * 179.72307 * 6 4 2 9 9 H 1.48498 * 109.47130 * 90.00219 * 8 6 4 10 10 H 1.48500 * 109.47053 * 210.00034 * 8 6 4 11 11 H 1.48494 * 109.47342 * 329.99861 * 8 6 4 12 12 N 1.46504 * 109.46927 * 119.99829 * 2 1 3 13 13 C 1.46505 * 120.00050 * 56.24734 * 12 2 1 14 14 S 1.65596 * 120.00129 * 236.24093 * 12 2 1 15 15 O 1.42096 * 106.40360 * 210.55217 * 14 12 2 16 16 O 1.42108 * 106.40061 * 343.47362 * 14 12 2 17 17 N 1.65603 * 107.21883 * 97.00845 * 14 12 2 18 18 C 1.46494 * 120.00136 * 299.93375 * 17 14 12 19 19 H 1.09006 * 110.26847 * 8.28043 * 18 17 14 20 20 C 1.51370 * 110.30214 * 246.21113 * 18 17 14 21 21 C 1.38497 * 130.39220 * 43.88598 * 20 18 17 22 22 C 1.38100 * 120.21383 * 179.97438 * 21 20 18 23 23 C 1.38262 * 119.93561 * 0.02645 * 22 21 20 24 24 C 1.38096 * 119.93447 * 359.97438 * 23 22 21 25 25 C 1.38221 * 109.75559 * 223.88417 * 20 18 17 26 26 C 1.51364 * 109.76055 * 0.02562 * 25 20 18 27 27 C 1.54347 * 110.30401 * 130.35662 * 18 17 14 28 28 H 1.08997 * 110.81980 * 27.05016 * 27 18 17 29 29 O 1.42896 * 110.82369 * 263.49574 * 27 18 17 30 30 H 1.08991 * 109.46754 * 62.98212 * 1 2 3 31 31 H 1.09005 * 109.46770 * 182.98476 * 1 2 3 32 32 H 1.09002 * 109.46630 * 302.98072 * 1 2 3 33 33 H 0.97006 * 119.99461 * 180.02562 * 7 6 4 34 34 H 1.08993 * 109.47067 * 89.99394 * 13 12 2 35 35 H 1.08995 * 109.46887 * 210.00040 * 13 12 2 36 36 H 1.08999 * 109.46541 * 329.99327 * 13 12 2 37 37 H 0.96994 * 119.99545 * 119.92724 * 17 14 12 38 38 H 1.07998 * 119.89070 * 0.02562 * 21 20 18 39 39 H 1.07996 * 120.03229 * 180.02562 * 22 21 20 40 40 H 1.08002 * 120.03001 * 180.02562 * 23 22 21 41 41 H 1.07999 * 119.89286 * 180.02562 * 24 23 22 42 42 H 1.08997 * 110.30725 * 136.11087 * 26 25 20 43 43 H 1.09005 * 110.29841 * 258.16574 * 26 25 20 44 44 H 0.96700 * 113.99621 * 180.02562 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5886 -1.1313 6 6 1.7040 -0.2361 -2.4827 7 7 0.9479 0.8332 -2.6033 8 14 2.3330 -1.1122 -4.0079 9 1 1.3569 -2.1532 -4.4187 10 1 2.5019 -0.1299 -5.1087 11 1 3.6403 -1.7499 -3.7087 12 7 2.0183 -0.6906 1.1962 13 6 1.5979 -2.0670 1.4704 14 16 3.0457 0.0844 2.2384 15 8 3.8691 -0.9214 2.8124 16 8 3.5637 1.2039 1.5328 17 7 2.1243 0.6947 3.4717 18 6 1.0622 1.6616 3.1834 19 1 0.9190 1.7554 2.1069 20 6 1.3994 3.0079 3.7876 21 6 2.5915 3.7128 3.8002 22 6 2.6646 4.9436 4.4223 23 6 1.5447 5.4745 5.0351 24 6 0.3551 4.7731 5.0236 25 6 0.2798 3.5387 4.4002 26 6 -0.8861 2.5851 4.2502 27 6 -0.2544 1.2295 3.8632 28 1 -0.0534 0.6293 4.7505 29 8 -1.0903 0.5201 2.9468 30 1 -0.3632 0.4668 -0.9154 31 1 -0.3633 -1.0263 0.0535 32 1 -0.3633 0.5594 0.8621 33 1 0.7166 1.1667 -3.4844 34 1 2.2991 -2.7604 1.0062 35 1 1.5808 -2.2339 2.5474 36 1 0.6008 -2.2304 1.0616 37 1 2.2879 0.4119 4.3850 38 1 3.4666 3.2989 3.3214 39 1 3.5956 5.4909 4.4300 40 1 1.6000 6.4371 5.5217 41 1 -0.5193 5.1887 5.5022 42 1 -1.4261 2.4966 5.1929 43 1 -1.5563 2.9282 3.4619 44 1 -1.9302 0.2274 3.3262 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282296969.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:48 Heat of formation + Delta-G solvation = -116.977804 kcal Electronic energy + Delta-G solvation = -29346.476022 eV Core-core repulsion = 25389.527907 eV Total energy + Delta-G solvation = -3956.948115 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.68 seconds Orbital eigenvalues (eV) -41.32237 -38.41060 -38.20773 -37.81998 -36.91817 -35.97908 -34.52252 -34.04440 -31.68525 -30.83579 -28.99500 -27.33381 -27.29312 -26.93007 -23.40357 -22.54860 -21.96683 -21.95982 -20.48567 -19.09066 -18.59589 -18.27404 -18.06755 -17.72349 -16.91249 -16.75543 -16.28890 -16.20844 -15.40115 -15.18262 -15.11487 -14.78639 -14.55200 -14.46477 -14.30226 -14.00096 -13.77452 -13.67750 -13.44960 -13.36326 -13.18701 -13.08544 -12.99722 -12.90506 -12.75523 -12.52293 -12.29441 -12.19247 -12.11733 -11.96781 -11.82028 -11.65021 -11.12231 -11.00001 -10.59502 -10.46458 -9.76451 -9.64887 -9.51050 -8.09654 -6.23959 -0.38913 0.38307 0.45588 1.40696 1.42608 1.52378 1.99116 2.42860 2.59084 2.81913 3.06328 3.17483 3.39688 3.46419 3.70521 3.93474 4.06261 4.11777 4.15428 4.22122 4.26865 4.43152 4.60843 4.69242 4.70768 4.78075 4.86709 4.88218 5.02611 5.08815 5.12074 5.17237 5.22402 5.24669 5.38594 5.53078 5.60086 5.64206 5.64757 5.77684 5.93600 6.06686 6.11143 6.21188 6.35639 6.83870 7.04691 7.44655 8.93715 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.014088 B = 0.004172 C = 0.004086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.996117 B = 6709.987326 C = 6850.947928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.276 3.724 3 H 0.018 0.982 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.018 3.982 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.268 1.268 10 H -0.283 1.283 11 H -0.276 1.276 12 N -0.990 5.990 13 C 0.108 3.892 14 S 2.791 3.209 15 O -1.013 7.013 16 O -1.014 7.014 17 N -1.103 6.103 18 C 0.193 3.807 19 H 0.081 0.919 20 C -0.130 4.130 21 C -0.116 4.116 22 C -0.131 4.131 23 C -0.111 4.111 24 C -0.110 4.110 25 C -0.092 4.092 26 C -0.105 4.105 27 C 0.109 3.891 28 H 0.100 0.900 29 O -0.561 6.561 30 H 0.058 0.942 31 H 0.038 0.962 32 H 0.057 0.943 33 H 0.264 0.736 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.080 0.920 37 H 0.424 0.576 38 H 0.100 0.900 39 H 0.139 0.861 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.115 0.885 43 H 0.094 0.906 44 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.722 4.848 19.687 21.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.172 3.828 3 H 0.036 0.964 4 C -0.581 4.581 5 H 0.071 0.929 6 C -0.182 4.182 7 N -0.551 5.551 8 Si 0.780 3.220 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.201 1.201 12 N -0.832 5.832 13 C -0.038 4.038 14 S 2.800 3.200 15 O -0.997 6.997 16 O -0.998 6.998 17 N -0.864 5.864 18 C 0.085 3.915 19 H 0.098 0.902 20 C -0.132 4.132 21 C -0.134 4.134 22 C -0.149 4.149 23 C -0.129 4.129 24 C -0.128 4.128 25 C -0.093 4.093 26 C -0.142 4.142 27 C 0.048 3.952 28 H 0.118 0.882 29 O -0.369 6.369 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.075 0.925 33 H 0.073 0.927 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.098 0.902 37 H 0.260 0.740 38 H 0.118 0.882 39 H 0.157 0.843 40 H 0.173 0.827 41 H 0.170 0.830 42 H 0.133 0.867 43 H 0.112 0.888 44 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -6.368 5.174 18.868 20.574 hybrid contribution 0.145 -0.598 -0.690 0.925 sum -6.223 4.576 18.177 19.750 Atomic orbital electron populations 1.21915 0.96002 1.00025 1.01275 1.18393 0.92890 0.90790 0.80759 0.96383 1.21703 1.31731 1.12859 0.91802 0.92946 1.25627 0.95270 0.95694 1.01584 1.70001 1.37325 1.23581 1.24218 0.85623 0.78771 0.78492 0.79144 1.19288 1.20825 1.20135 1.57427 1.66552 1.23355 1.35916 1.21299 1.01268 0.80860 1.00328 1.01383 0.73432 0.72579 0.72606 1.93513 1.66907 1.59999 1.79239 1.93550 1.78284 1.54162 1.73775 1.55732 1.50548 1.56866 1.23284 1.20182 0.86790 0.84636 0.99859 0.90155 1.20697 0.95227 0.96587 1.00661 1.20822 0.97164 0.95927 0.99508 1.21323 1.00391 0.94800 0.98381 1.21453 0.92088 1.00669 0.98697 1.20977 0.99140 0.93200 0.99470 1.20688 0.95172 0.96134 0.97319 1.21811 0.95688 0.92311 1.04438 1.22673 0.88323 0.92488 0.91734 0.88244 1.86636 1.34423 1.75783 1.40087 0.92326 0.94270 0.92459 0.92709 0.94326 0.90391 0.90152 0.73979 0.88216 0.84284 0.82681 0.82994 0.86719 0.88806 0.75018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.18 8.98 71.98 0.65 -5.53 16 2 C 0.28 14.15 2.23 44.25 0.10 14.25 16 3 H 0.02 1.08 6.80 -2.39 -0.02 1.06 16 4 C -0.54 -30.60 8.42 25.60 0.22 -30.39 16 5 H 0.05 2.96 7.76 -2.91 -0.02 2.94 16 6 C 0.02 1.02 5.30 84.65 0.45 1.47 16 7 N -0.91 -52.89 11.31 21.45 0.24 -52.65 16 8 Si 0.95 44.72 29.54 68.60 2.03 46.75 16 9 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 10 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 11 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 12 N -0.99 -42.63 3.12 -520.44 -1.62 -44.26 16 13 C 0.11 3.87 9.72 127.77 1.24 5.11 16 14 S 2.79 115.44 5.89 -56.49 -0.33 115.11 16 15 O -1.01 -43.78 17.46 -128.00 -2.24 -46.02 16 16 O -1.01 -50.80 16.41 -128.00 -2.10 -52.90 16 17 N -1.10 -33.50 5.46 -169.71 -0.93 -34.43 16 18 C 0.19 5.78 3.31 44.92 0.15 5.93 16 19 H 0.08 3.08 6.53 -2.38 -0.02 3.06 16 20 C -0.13 -3.72 5.79 -19.59 -0.11 -3.83 16 21 C -0.12 -3.49 10.00 22.30 0.22 -3.27 16 22 C -0.13 -3.06 10.05 22.24 0.22 -2.84 16 23 C -0.11 -2.03 10.05 22.24 0.22 -1.81 16 24 C -0.11 -1.98 10.04 22.30 0.22 -1.75 16 25 C -0.09 -2.03 6.14 -19.59 -0.12 -2.15 16 26 C -0.10 -1.74 6.52 30.56 0.20 -1.54 16 27 C 0.11 2.21 4.15 31.55 0.13 2.34 16 28 H 0.10 1.53 8.08 -2.39 -0.02 1.51 16 29 O -0.56 -11.98 11.31 -148.98 -1.68 -13.67 16 30 H 0.06 3.08 6.01 -2.39 -0.01 3.07 16 31 H 0.04 1.70 6.42 -2.38 -0.02 1.68 16 32 H 0.06 2.36 4.99 -2.39 -0.01 2.35 16 33 H 0.26 14.49 8.31 -92.70 -0.77 13.72 16 34 H 0.04 1.42 8.14 -2.39 -0.02 1.41 16 35 H 0.08 2.24 7.96 -2.39 -0.02 2.23 16 36 H 0.08 2.76 6.18 -2.39 -0.01 2.75 16 37 H 0.42 10.05 8.94 -96.75 -0.87 9.19 16 38 H 0.10 3.45 8.06 -2.91 -0.02 3.43 16 39 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 42 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 43 H 0.09 1.63 8.10 -2.38 -0.02 1.61 16 44 H 0.40 4.27 9.12 -74.06 -0.68 3.59 16 Total: -1.00 -77.71 366.23 -3.34 -81.05 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: -0.49 Total: 25.04 kcal Atomic # 6 Polarization: -27.80 SS G_CDS: 3.79 Total: -24.01 kcal Atomic # 7 Polarization: -129.03 SS G_CDS: -2.31 Total: -131.34 kcal Atomic # 8 Polarization: -106.57 SS G_CDS: -6.02 Total: -112.59 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 115.44 SS G_CDS: -0.33 Total: 115.11 kcal Total: -77.71 -3.34 -81.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282296969.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.929 kcal (2) G-P(sol) polarization free energy of solvation -77.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.642 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.68 seconds