Wall clock time and date at job start Sat Apr 11 2020 05:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08993 * 109.47373 * 2 1 4 4 C 1.50703 * 109.46740 * 240.00309 * 2 1 3 5 5 H 1.08001 * 119.99752 * 239.99722 * 4 2 1 6 6 C 1.37871 * 120.00029 * 60.00468 * 4 2 1 7 7 N 1.31517 * 120.00253 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00222 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.46633 * 89.99807 * 8 6 4 10 10 H 1.48493 * 109.47372 * 209.99715 * 8 6 4 11 11 H 1.48496 * 109.46975 * 330.00227 * 8 6 4 12 12 N 1.46500 * 109.47106 * 120.00702 * 2 1 3 13 13 C 1.46504 * 120.00056 * 59.99605 * 12 2 1 14 14 S 1.65598 * 119.99960 * 239.99714 * 12 2 1 15 15 O 1.42103 * 106.40362 * 336.46239 * 14 12 2 16 16 O 1.42095 * 106.40261 * 203.53786 * 14 12 2 17 17 N 1.65603 * 107.21504 * 89.99897 * 14 12 2 18 18 C 1.46500 * 119.99946 * 65.00326 * 17 14 12 19 19 H 1.08997 * 110.27150 * 334.37518 * 18 17 14 20 20 C 1.51372 * 110.30189 * 96.45096 * 18 17 14 21 21 C 1.38492 * 130.39343 * 316.19884 * 20 18 17 22 22 C 1.38106 * 120.21541 * 180.02562 * 21 20 18 23 23 C 1.38254 * 119.93398 * 359.97438 * 22 21 20 24 24 C 1.38103 * 119.93614 * 359.97438 * 23 22 21 25 25 C 1.38217 * 109.75802 * 136.43346 * 20 18 17 26 26 C 1.51374 * 109.75875 * 359.63695 * 25 20 18 27 27 C 1.54342 * 105.23004 * 343.16486 * 26 25 20 28 28 H 1.09002 * 110.99171 * 267.84713 * 27 26 25 29 29 O 1.42899 * 110.82610 * 144.37301 * 27 26 25 30 30 H 1.09000 * 109.47024 * 299.99526 * 1 2 3 31 31 H 1.09003 * 109.46728 * 59.99617 * 1 2 3 32 32 H 1.09001 * 109.46940 * 179.97438 * 1 2 3 33 33 H 0.96999 * 120.00111 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47402 * 270.00235 * 13 12 2 35 35 H 1.09001 * 109.46722 * 30.00136 * 13 12 2 36 36 H 1.09002 * 109.47078 * 150.00001 * 13 12 2 37 37 H 0.97002 * 119.99973 * 244.99701 * 17 14 12 38 38 H 1.08000 * 119.89442 * 0.02562 * 21 20 18 39 39 H 1.08004 * 120.03466 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.02985 * 180.02562 * 23 22 21 41 41 H 1.08002 * 119.88983 * 180.02562 * 24 23 22 42 42 H 1.09005 * 110.44237 * 224.13450 * 26 25 20 43 43 H 1.09000 * 110.19142 * 102.06483 * 26 25 20 44 44 H 0.96695 * 114.00050 * 67.02829 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9428 0.8299 -2.6034 8 14 2.3224 -1.1193 -4.0081 9 1 1.3445 -2.1612 -4.4125 10 1 2.4871 -0.1400 -5.1121 11 1 3.6306 -1.7565 -3.7122 12 7 2.0184 -0.6908 1.1961 13 6 1.6644 -2.0934 1.4278 14 16 2.9705 0.1139 2.2862 15 8 3.5795 1.1828 1.5749 16 8 3.7118 -0.8793 2.9813 17 7 1.9607 0.8087 3.3998 18 6 1.1510 -0.0357 4.2816 19 1 0.9703 -1.0043 3.8157 20 6 1.8420 -0.2156 5.6164 21 6 3.1688 -0.4812 5.9115 22 6 3.5770 -0.6066 7.2249 23 6 2.6590 -0.4661 8.2491 24 6 1.3357 -0.2002 7.9568 25 6 0.9233 -0.0804 6.6401 26 6 -0.4463 0.2085 6.0638 27 6 -0.1878 0.6586 4.6102 28 1 -0.0876 1.7422 4.5490 29 8 -1.2257 0.1968 3.7432 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 0.7088 1.1616 -3.4843 34 1 0.7375 -2.1446 1.9991 35 1 1.5294 -2.5969 0.4705 36 1 2.4628 -2.5822 1.9861 37 1 1.9055 1.7747 3.4683 38 1 3.8865 -0.5907 5.1120 39 1 4.6123 -0.8142 7.4517 40 1 2.9766 -0.5634 9.2767 41 1 0.6193 -0.0901 8.7575 42 1 -0.9353 1.0049 6.6250 43 1 -1.0581 -0.6935 6.0773 44 1 -2.0871 0.6034 3.9096 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282296971.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:56:52 Heat of formation + Delta-G solvation = -91.599639 kcal Electronic energy + Delta-G solvation = -29038.856012 eV Core-core repulsion = 25083.008376 eV Total energy + Delta-G solvation = -3955.847635 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46360 -37.41771 -36.66260 -36.09403 -35.23245 -34.98213 -33.11255 -32.53857 -30.72581 -29.03838 -28.19840 -26.34799 -25.43226 -25.11317 -22.57651 -21.19478 -21.01557 -20.74401 -18.97602 -17.69050 -17.11459 -17.01417 -16.70907 -16.10984 -15.93587 -15.29719 -15.20229 -14.63474 -14.26882 -14.13495 -13.71228 -13.50249 -13.36885 -13.26047 -13.09783 -12.84636 -12.57699 -12.39602 -11.97543 -11.80336 -11.78510 -11.53563 -11.41263 -11.28583 -11.18917 -10.97304 -10.86699 -10.78589 -10.73738 -10.41699 -10.26551 -10.15296 -10.02070 -9.44439 -9.19446 -8.86263 -8.68869 -8.41669 -7.91627 -6.03512 -4.09891 1.12157 1.29408 1.37832 3.30591 3.37354 3.40791 3.45538 3.69288 3.85044 4.06853 4.25202 4.43063 4.51283 4.74765 4.86541 4.93142 5.01676 5.12952 5.20096 5.24295 5.28130 5.36484 5.48345 5.59697 5.68916 5.76957 5.87986 6.05891 6.08993 6.18031 6.35175 6.40630 6.50437 6.57321 6.73588 6.92890 6.93287 6.93998 7.11221 7.16225 7.51208 7.54637 7.69198 7.85132 8.11004 8.32881 8.91879 9.55374 11.02067 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.020560 B = 0.003702 C = 0.003365 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.530921 B = 7561.956399 C = 8319.132548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.269 3.731 3 H 0.056 0.944 4 C -0.520 4.520 5 H 0.062 0.938 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.984 5.984 13 C 0.094 3.906 14 S 2.776 3.224 15 O -0.974 6.974 16 O -0.993 6.993 17 N -1.122 6.122 18 C 0.205 3.795 19 H 0.110 0.890 20 C -0.109 4.109 21 C -0.088 4.088 22 C -0.124 4.124 23 C -0.116 4.116 24 C -0.114 4.114 25 C -0.091 4.091 26 C -0.114 4.114 27 C 0.103 3.897 28 H 0.078 0.922 29 O -0.546 6.546 30 H 0.016 0.984 31 H 0.089 0.911 32 H 0.031 0.969 33 H 0.262 0.738 34 H 0.039 0.961 35 H 0.084 0.916 36 H 0.062 0.938 37 H 0.412 0.588 38 H 0.143 0.857 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.118 0.882 42 H 0.080 0.920 43 H 0.093 0.907 44 H 0.381 0.619 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.268 -0.608 20.328 20.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.166 3.834 3 H 0.074 0.926 4 C -0.560 4.560 5 H 0.080 0.920 6 C -0.139 4.139 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 N -0.827 5.827 13 C -0.052 4.052 14 S 2.785 3.215 15 O -0.958 6.958 16 O -0.977 6.977 17 N -0.878 5.878 18 C 0.097 3.903 19 H 0.127 0.873 20 C -0.111 4.111 21 C -0.106 4.106 22 C -0.142 4.142 23 C -0.134 4.134 24 C -0.132 4.132 25 C -0.092 4.092 26 C -0.151 4.151 27 C 0.042 3.958 28 H 0.096 0.904 29 O -0.351 6.351 30 H 0.035 0.965 31 H 0.107 0.893 32 H 0.050 0.950 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.102 0.898 36 H 0.080 0.920 37 H 0.245 0.755 38 H 0.160 0.840 39 H 0.142 0.858 40 H 0.140 0.860 41 H 0.136 0.864 42 H 0.098 0.902 43 H 0.111 0.889 44 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.876 -0.990 19.891 20.123 hybrid contribution -0.642 0.270 -0.530 0.875 sum -3.518 -0.720 19.361 19.692 Atomic orbital electron populations 1.22066 0.97891 0.99773 1.00649 1.18724 0.91549 0.92816 0.80274 0.92588 1.21350 1.31520 1.12970 0.90124 0.91959 1.24901 0.95001 0.95018 0.98954 1.69869 1.36588 1.22701 1.23685 0.86507 0.79278 0.79289 0.82392 1.20670 1.21156 1.19849 1.57580 1.69765 1.19783 1.35590 1.21357 0.98739 0.82376 1.02768 1.02014 0.73752 0.73272 0.72418 1.93619 1.74423 1.56009 1.71750 1.93490 1.69294 1.60718 1.74177 1.56335 1.61918 1.17111 1.52467 1.19933 0.87825 0.94963 0.87592 0.87274 1.20745 0.94202 1.01029 0.95114 1.21150 0.95468 0.96559 0.97445 1.21117 0.99753 1.00889 0.92480 1.21057 0.93161 1.00082 0.99143 1.20534 0.96023 1.01778 0.94902 1.20342 0.95363 1.00119 0.93365 1.21788 0.94793 1.02646 0.95912 1.22644 0.87670 0.97644 0.87802 0.90398 1.86622 1.20686 1.69015 1.58801 0.96457 0.89271 0.94999 0.92764 0.94283 0.89779 0.91952 0.75503 0.83969 0.85777 0.85997 0.86357 0.90192 0.88859 0.77174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.35 8.97 37.16 0.33 -3.02 16 2 C 0.27 6.69 2.62 -69.08 -0.18 6.51 16 3 H 0.06 1.55 6.91 -51.93 -0.36 1.19 16 4 C -0.52 -14.15 7.99 -34.44 -0.28 -14.43 16 5 H 0.06 1.68 7.33 -52.49 -0.38 1.30 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -24.98 11.32 55.43 0.63 -24.35 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 12 N -0.98 -20.74 3.12 -115.85 -0.36 -21.10 16 13 C 0.09 1.72 9.11 59.85 0.55 2.27 16 14 S 2.78 54.72 6.07 -107.50 -0.65 54.06 16 15 O -0.97 -22.93 16.70 -57.17 -0.95 -23.88 16 16 O -0.99 -19.85 14.12 -57.17 -0.81 -20.66 16 17 N -1.12 -17.19 5.58 -4.99 -0.03 -17.22 16 18 C 0.21 2.83 3.16 -68.04 -0.21 2.62 16 19 H 0.11 1.63 6.65 -51.93 -0.35 1.28 16 20 C -0.11 -1.46 5.79 -104.21 -0.60 -2.07 16 21 C -0.09 -1.23 9.86 -39.54 -0.39 -1.62 16 22 C -0.12 -1.44 10.05 -39.62 -0.40 -1.83 16 23 C -0.12 -1.16 10.05 -39.63 -0.40 -1.56 16 24 C -0.11 -1.14 10.04 -39.54 -0.40 -1.54 16 25 C -0.09 -1.02 6.14 -104.20 -0.64 -1.66 16 26 C -0.11 -1.02 6.52 -26.85 -0.17 -1.20 16 27 C 0.10 1.12 4.15 -25.32 -0.11 1.02 16 28 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 29 O -0.55 -6.19 13.39 -35.23 -0.47 -6.66 16 30 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.09 2.28 6.07 -51.93 -0.32 1.97 16 32 H 0.03 0.71 7.67 -51.93 -0.40 0.31 16 33 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.04 0.63 7.41 -51.93 -0.38 0.25 16 35 H 0.08 1.61 7.02 -51.93 -0.36 1.24 16 36 H 0.06 1.06 7.02 -51.93 -0.36 0.70 16 37 H 0.41 5.51 8.65 -34.47 -0.30 5.21 16 38 H 0.14 2.24 5.70 -52.49 -0.30 1.94 16 39 H 0.12 1.18 8.06 -52.48 -0.42 0.76 16 40 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.80 8.10 -51.93 -0.42 0.38 16 44 H 0.38 2.51 9.12 45.56 0.42 2.93 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -33.64 365.19 -10.34 -43.97 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: -5.18 Total: 8.92 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.99 Total: -14.87 kcal Atomic # 7 Polarization: -62.90 SS G_CDS: 0.24 Total: -62.67 kcal Atomic # 8 Polarization: -48.96 SS G_CDS: -2.23 Total: -51.19 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 54.72 SS G_CDS: -0.65 Total: 54.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.64 -10.34 -43.97 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282296971.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.626 kcal (2) G-P(sol) polarization free energy of solvation -33.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds