Wall clock time and date at job start Sat Apr 11 2020 05:57:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46685 * 2 1 4 4 C 1.50701 * 109.46840 * 119.99502 * 2 1 3 5 5 H 1.08000 * 120.00006 * 120.00706 * 4 2 1 6 6 C 1.37875 * 119.99868 * 300.00012 * 4 2 1 7 7 N 1.31509 * 120.00240 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47329 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47243 * 120.00395 * 8 6 4 11 11 H 1.48507 * 109.46933 * 239.99935 * 8 6 4 12 12 N 1.46501 * 109.47150 * 239.99756 * 2 1 3 13 13 C 1.46501 * 119.99819 * 299.99538 * 12 2 1 14 14 S 1.65598 * 119.99859 * 120.00145 * 12 2 1 15 15 O 1.42102 * 106.40249 * 156.45731 * 14 12 2 16 16 O 1.42100 * 106.40115 * 23.53469 * 14 12 2 17 17 N 1.65602 * 107.21590 * 269.99797 * 14 12 2 18 18 C 1.46491 * 120.00086 * 64.99989 * 17 14 12 19 19 H 1.09000 * 110.27423 * 337.07757 * 18 17 14 20 20 C 1.51374 * 110.30094 * 99.25378 * 18 17 14 21 21 C 1.38497 * 130.39130 * 281.71875 * 20 18 17 22 22 C 1.38704 * 120.04880 * 180.11992 * 21 20 18 23 23 C 1.38248 * 120.00371 * 359.94149 * 22 21 20 24 24 C 1.38110 * 119.93564 * 0.02562 * 23 22 21 25 25 C 1.38455 * 109.79262 * 101.76505 * 20 18 17 26 26 C 1.51370 * 109.63003 * 359.95201 * 25 20 18 27 27 C 1.54347 * 105.25432 * 17.23988 * 26 25 20 28 28 H 1.09005 * 110.81814 * 91.82325 * 27 26 25 29 29 O 1.42900 * 110.82296 * 215.17668 * 27 26 25 30 30 H 1.08998 * 109.47543 * 299.99870 * 1 2 3 31 31 H 1.09003 * 109.47261 * 60.00580 * 1 2 3 32 32 H 1.09001 * 109.46967 * 180.02562 * 1 2 3 33 33 H 0.97007 * 120.00039 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47190 * 270.00384 * 13 12 2 35 35 H 1.09002 * 109.47332 * 30.00766 * 13 12 2 36 36 H 1.09005 * 109.46591 * 150.00266 * 13 12 2 37 37 H 0.97002 * 119.99250 * 244.99792 * 17 14 12 38 38 H 1.07991 * 119.89384 * 0.02927 * 21 20 18 39 39 H 1.08002 * 119.96237 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.03634 * 180.02562 * 23 22 21 41 41 H 1.08001 * 119.89282 * 180.02562 * 24 23 22 42 42 H 1.09002 * 110.30562 * 258.26772 * 26 25 20 43 43 H 1.08997 * 110.30096 * 136.21218 * 26 25 20 44 44 H 0.96700 * 113.99745 * 298.54238 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 3.1472 -2.2861 3.6040 10 1 3.1470 -0.1855 4.8162 11 1 1.1676 -1.5863 4.8166 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 16 2.9704 0.1141 -2.2862 15 8 3.7119 -0.8790 -2.9813 16 8 3.5793 1.1829 -1.5748 17 7 1.9607 0.8089 -3.3998 18 6 1.0291 1.8616 -2.9876 19 1 0.8297 1.7920 -1.9182 20 6 1.5912 3.2244 -3.3314 21 6 2.5578 3.9836 -2.6933 22 6 2.9131 5.2247 -3.2006 23 6 2.3031 5.7042 -4.3448 24 6 1.3396 4.9466 -4.9814 25 6 0.9821 3.7072 -4.4773 26 6 -0.0290 2.6988 -4.9792 27 6 -0.2874 1.7544 -3.7860 28 1 -1.1311 2.1041 -3.1909 29 8 -0.5059 0.4157 -4.2357 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 0.7080 1.1611 3.4843 34 1 2.4158 -2.7377 -0.9714 35 1 0.6905 -2.3003 -0.9845 36 1 1.6239 -2.2853 -2.5001 37 1 1.9862 0.5187 -4.3250 38 1 3.0334 3.6085 -1.7993 39 1 3.6668 5.8158 -2.7016 40 1 2.5796 6.6704 -4.7405 41 1 0.8638 5.3217 -5.8754 42 1 0.3796 2.1406 -5.8217 43 1 -0.9513 3.2010 -5.2708 44 1 -1.2761 0.3151 -4.8117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000282974661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:16 Heat of formation + Delta-G solvation = -89.868534 kcal Electronic energy + Delta-G solvation = -29384.674888 eV Core-core repulsion = 25428.902319 eV Total energy + Delta-G solvation = -3955.772569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -40.34871 -37.36507 -36.59817 -36.10285 -35.13539 -34.73768 -32.78474 -32.54185 -30.69634 -29.06720 -28.08253 -26.41016 -25.52467 -25.11274 -22.45149 -21.05709 -20.81909 -20.69829 -18.91338 -17.52939 -17.25036 -16.78669 -16.41924 -16.19485 -15.55423 -15.46894 -15.18430 -14.82509 -14.33933 -13.90592 -13.52077 -13.48409 -13.34661 -13.15033 -13.09499 -12.78932 -12.61514 -12.05673 -11.90759 -11.81885 -11.65312 -11.38812 -11.36594 -11.32934 -11.16701 -10.96005 -10.86424 -10.77083 -10.61476 -10.40844 -10.24648 -10.16658 -9.98998 -9.31223 -9.18763 -8.74762 -8.58421 -8.43899 -7.90949 -6.06078 -4.11716 1.17768 1.41854 1.50701 3.28943 3.37183 3.41793 3.51587 3.85018 3.91793 4.24538 4.29264 4.42073 4.59196 4.88585 4.96388 5.04080 5.11028 5.23493 5.25541 5.31707 5.41085 5.45617 5.59299 5.67098 5.75967 5.83065 6.00665 6.13246 6.23352 6.25687 6.45317 6.46473 6.61622 6.67916 6.70538 6.80110 6.83573 7.01888 7.06422 7.26203 7.51183 7.58861 7.67616 7.81342 8.05954 8.30102 8.90945 9.54051 10.99648 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.004378 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.060757 B = 6393.727441 C = 6885.377460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.267 3.733 3 H 0.057 0.943 4 C -0.516 4.516 5 H 0.063 0.937 6 C 0.063 3.937 7 N -0.891 5.891 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.988 5.988 13 C 0.114 3.886 14 S 2.779 3.221 15 O -0.998 6.998 16 O -0.974 6.974 17 N -1.107 6.107 18 C 0.203 3.797 19 H 0.108 0.892 20 C -0.111 4.111 21 C -0.078 4.078 22 C -0.125 4.125 23 C -0.115 4.115 24 C -0.118 4.118 25 C -0.089 4.089 26 C -0.115 4.115 27 C 0.102 3.898 28 H 0.082 0.918 29 O -0.544 6.544 30 H 0.092 0.908 31 H 0.012 0.988 32 H 0.034 0.966 33 H 0.262 0.738 34 H 0.046 0.954 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.412 0.588 38 H 0.141 0.859 39 H 0.125 0.875 40 H 0.121 0.879 41 H 0.117 0.883 42 H 0.089 0.911 43 H 0.078 0.922 44 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.205 6.047 -15.687 17.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.164 3.836 3 H 0.075 0.925 4 C -0.556 4.556 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.210 1.210 12 N -0.831 5.831 13 C -0.033 4.033 14 S 2.787 3.213 15 O -0.982 6.982 16 O -0.957 6.957 17 N -0.863 5.863 18 C 0.094 3.906 19 H 0.126 0.874 20 C -0.113 4.113 21 C -0.096 4.096 22 C -0.143 4.143 23 C -0.133 4.133 24 C -0.136 4.136 25 C -0.089 4.089 26 C -0.152 4.152 27 C 0.041 3.959 28 H 0.099 0.901 29 O -0.348 6.348 30 H 0.110 0.890 31 H 0.031 0.969 32 H 0.053 0.947 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.244 0.756 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.139 0.861 41 H 0.135 0.865 42 H 0.107 0.893 43 H 0.096 0.904 44 H 0.224 0.776 Dipole moment (debyes) X Y Z Total from point charges -3.789 6.132 -14.979 16.623 hybrid contribution -0.623 -0.365 0.139 0.736 sum -4.412 5.767 -14.840 16.521 Atomic orbital electron populations 1.22157 0.98317 0.99931 1.00430 1.18740 0.91241 0.92889 0.80778 0.92492 1.21375 1.31318 1.12915 0.90011 0.91923 1.24892 0.94994 0.95014 0.98960 1.69859 1.36720 1.22805 1.23613 0.86460 0.78599 0.79706 0.82758 1.19741 1.20939 1.21037 1.57650 1.69965 1.19955 1.35552 1.21097 1.01401 0.81861 0.98907 1.01981 0.73589 0.73177 0.72510 1.93540 1.69729 1.60123 1.74833 1.93575 1.73871 1.55784 1.72465 1.55940 1.56135 1.49947 1.24283 1.20011 0.86866 0.83689 0.99993 0.87419 1.20840 0.97999 0.95933 0.96503 1.21216 0.95147 0.93226 1.00042 1.21253 1.00359 0.96044 0.96653 1.21039 0.96711 0.99570 0.95992 1.20503 0.98920 0.93813 1.00333 1.20411 0.97840 0.94788 0.95910 1.21825 0.98094 0.96011 0.99272 1.22613 0.96883 0.82471 0.93981 0.90059 1.86571 1.51987 1.26210 1.70051 0.88961 0.96948 0.94666 0.92814 0.93561 0.91086 0.93208 0.75561 0.84116 0.85722 0.86056 0.86519 0.89315 0.90362 0.77567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 8.84 37.16 0.33 -2.97 16 2 C 0.27 6.42 1.95 -69.08 -0.13 6.29 16 3 H 0.06 1.50 6.72 -51.93 -0.35 1.15 16 4 C -0.52 -13.88 8.37 -34.44 -0.29 -14.16 16 5 H 0.06 1.70 7.65 -52.49 -0.40 1.30 16 6 C 0.06 1.71 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.47 11.32 55.43 0.63 -23.84 16 8 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 10 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 N -0.99 -20.83 3.12 -115.84 -0.36 -21.19 16 13 C 0.11 2.12 9.53 59.85 0.57 2.69 16 14 S 2.78 56.13 6.01 -107.50 -0.65 55.48 16 15 O -1.00 -21.76 17.21 -57.17 -0.98 -22.74 16 16 O -0.97 -22.32 15.48 -57.17 -0.88 -23.20 16 17 N -1.11 -17.69 5.05 -4.99 -0.03 -17.72 16 18 C 0.20 3.08 3.37 -68.05 -0.23 2.85 16 19 H 0.11 1.86 5.64 -51.93 -0.29 1.57 16 20 C -0.11 -1.66 5.77 -104.12 -0.60 -2.26 16 21 C -0.08 -1.23 10.01 -39.31 -0.39 -1.62 16 22 C -0.13 -1.63 10.07 -39.41 -0.40 -2.03 16 23 C -0.11 -1.29 10.05 -39.62 -0.40 -1.69 16 24 C -0.12 -1.31 10.04 -39.53 -0.40 -1.71 16 25 C -0.09 -1.10 6.15 -104.12 -0.64 -1.74 16 26 C -0.11 -1.11 6.51 -26.85 -0.17 -1.29 16 27 C 0.10 1.16 4.32 -25.32 -0.11 1.05 16 28 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 29 O -0.54 -5.83 12.45 -35.23 -0.44 -6.26 16 30 H 0.09 2.27 6.07 -51.93 -0.32 1.95 16 31 H 0.01 0.23 6.83 -51.93 -0.35 -0.13 16 32 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 33 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 34 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.07 1.27 6.43 -51.93 -0.33 0.94 16 36 H 0.05 0.81 7.79 -51.93 -0.40 0.41 16 37 H 0.41 5.82 8.51 -34.47 -0.29 5.52 16 38 H 0.14 2.49 7.12 -52.49 -0.37 2.12 16 39 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 40 H 0.12 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.12 1.01 8.06 -52.49 -0.42 0.58 16 42 H 0.09 0.81 8.10 -51.93 -0.42 0.39 16 43 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.38 2.23 9.11 45.56 0.42 2.65 16 LS Contribution 365.31 15.07 5.51 5.51 Total: -1.00 -33.00 365.31 -10.33 -43.33 By element: Atomic # 1 Polarization: 14.63 SS G_CDS: -5.14 Total: 9.49 kcal Atomic # 6 Polarization: -12.02 SS G_CDS: -2.96 Total: -14.97 kcal Atomic # 7 Polarization: -62.99 SS G_CDS: 0.24 Total: -62.75 kcal Atomic # 8 Polarization: -49.90 SS G_CDS: -2.31 Total: -52.21 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 16 Polarization: 56.13 SS G_CDS: -0.65 Total: 55.48 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.00 -10.33 -43.33 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282974661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.536 kcal (2) G-P(sol) polarization free energy of solvation -33.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.540 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.332 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds