Wall clock time and date at job start Sat Apr 11 2020 05:57:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.46685 * 2 1 4 4 C 1.50701 * 109.46840 * 119.99502 * 2 1 3 5 5 H 1.08000 * 120.00006 * 120.00706 * 4 2 1 6 6 C 1.37875 * 119.99868 * 300.00012 * 4 2 1 7 7 N 1.31509 * 120.00240 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99607 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47329 * 359.97438 * 8 6 4 10 10 H 1.48496 * 109.47243 * 120.00395 * 8 6 4 11 11 H 1.48507 * 109.46933 * 239.99935 * 8 6 4 12 12 N 1.46501 * 109.47150 * 239.99756 * 2 1 3 13 13 C 1.46501 * 119.99819 * 299.99538 * 12 2 1 14 14 S 1.65598 * 119.99859 * 120.00145 * 12 2 1 15 15 O 1.42102 * 106.40249 * 156.45731 * 14 12 2 16 16 O 1.42100 * 106.40115 * 23.53469 * 14 12 2 17 17 N 1.65602 * 107.21590 * 269.99797 * 14 12 2 18 18 C 1.46491 * 120.00086 * 64.99989 * 17 14 12 19 19 H 1.09000 * 110.27423 * 337.07757 * 18 17 14 20 20 C 1.51374 * 110.30094 * 99.25378 * 18 17 14 21 21 C 1.38497 * 130.39130 * 281.71875 * 20 18 17 22 22 C 1.38704 * 120.04880 * 180.11992 * 21 20 18 23 23 C 1.38248 * 120.00371 * 359.94149 * 22 21 20 24 24 C 1.38110 * 119.93564 * 0.02562 * 23 22 21 25 25 C 1.38455 * 109.79262 * 101.76505 * 20 18 17 26 26 C 1.51370 * 109.63003 * 359.95201 * 25 20 18 27 27 C 1.54347 * 105.25432 * 17.23988 * 26 25 20 28 28 H 1.09005 * 110.81814 * 91.82325 * 27 26 25 29 29 O 1.42900 * 110.82296 * 215.17668 * 27 26 25 30 30 H 1.08998 * 109.47543 * 299.99870 * 1 2 3 31 31 H 1.09003 * 109.47261 * 60.00580 * 1 2 3 32 32 H 1.09001 * 109.46967 * 180.02562 * 1 2 3 33 33 H 0.97007 * 120.00039 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47190 * 270.00384 * 13 12 2 35 35 H 1.09002 * 109.47332 * 30.00766 * 13 12 2 36 36 H 1.09005 * 109.46591 * 150.00266 * 13 12 2 37 37 H 0.97002 * 119.99250 * 244.99792 * 17 14 12 38 38 H 1.07991 * 119.89384 * 0.02927 * 21 20 18 39 39 H 1.08002 * 119.96237 * 179.97438 * 22 21 20 40 40 H 1.08003 * 120.03634 * 180.02562 * 23 22 21 41 41 H 1.08001 * 119.89282 * 180.02562 * 24 23 22 42 42 H 1.09002 * 110.30562 * 258.26772 * 26 25 20 43 43 H 1.08997 * 110.30096 * 136.21218 * 26 25 20 44 44 H 0.96700 * 113.99745 * 298.54238 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6533 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4827 7 7 0.9427 0.8298 2.6033 8 14 2.3224 -1.1193 4.0080 9 1 3.1472 -2.2861 3.6040 10 1 3.1470 -0.1855 4.8162 11 1 1.1676 -1.5863 4.8166 12 7 2.0184 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4278 14 16 2.9704 0.1141 -2.2862 15 8 3.7119 -0.8790 -2.9813 16 8 3.5793 1.1829 -1.5748 17 7 1.9607 0.8089 -3.3998 18 6 1.0291 1.8616 -2.9876 19 1 0.8297 1.7920 -1.9182 20 6 1.5912 3.2244 -3.3314 21 6 2.5578 3.9836 -2.6933 22 6 2.9131 5.2247 -3.2006 23 6 2.3031 5.7042 -4.3448 24 6 1.3396 4.9466 -4.9814 25 6 0.9821 3.7072 -4.4773 26 6 -0.0290 2.6988 -4.9792 27 6 -0.2874 1.7544 -3.7860 28 1 -1.1311 2.1041 -3.1909 29 8 -0.5059 0.4157 -4.2357 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8901 32 1 -0.3633 -1.0277 0.0005 33 1 0.7080 1.1611 3.4843 34 1 2.4158 -2.7377 -0.9714 35 1 0.6905 -2.3003 -0.9845 36 1 1.6239 -2.2853 -2.5001 37 1 1.9862 0.5187 -4.3250 38 1 3.0334 3.6085 -1.7993 39 1 3.6668 5.8158 -2.7016 40 1 2.5796 6.6704 -4.7405 41 1 0.8638 5.3217 -5.8754 42 1 0.3796 2.1406 -5.8217 43 1 -0.9513 3.2010 -5.2708 44 1 -1.2761 0.3151 -4.8117 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000282974661.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:15 Heat of formation + Delta-G solvation = -115.426573 kcal Electronic energy + Delta-G solvation = -29385.783167 eV Core-core repulsion = 25428.902319 eV Total energy + Delta-G solvation = -3956.880849 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31918 -38.37255 -38.23717 -37.87298 -36.87541 -35.76683 -34.52683 -33.82328 -31.73460 -30.91625 -28.98574 -27.47324 -27.27607 -26.99058 -23.40222 -22.59718 -21.95855 -21.83569 -20.42957 -19.02019 -18.62794 -18.16866 -18.12978 -17.53047 -16.90491 -16.66684 -16.45602 -16.12706 -15.84278 -15.24495 -14.89612 -14.77045 -14.66716 -14.31787 -14.26523 -14.15623 -13.75398 -13.55348 -13.36521 -13.32962 -13.17268 -13.08596 -12.99831 -12.83416 -12.75771 -12.59762 -12.35901 -12.19742 -12.17241 -11.95511 -11.81043 -11.64507 -11.14563 -10.95927 -10.57424 -10.46943 -9.78079 -9.66093 -9.51424 -8.12171 -6.25123 -0.35163 0.39423 0.47028 1.40057 1.43012 1.53664 2.04121 2.42641 2.59927 2.87633 3.06150 3.16037 3.42496 3.45071 3.65378 3.92701 4.06916 4.10928 4.21687 4.27382 4.33653 4.45450 4.61935 4.69017 4.73117 4.78430 4.84782 4.89504 5.00761 5.03277 5.06290 5.13630 5.14453 5.17385 5.24363 5.53155 5.61083 5.62740 5.68246 5.72335 5.88088 6.08674 6.11877 6.19845 6.31393 6.82112 7.00988 7.43615 8.92112 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.013702 B = 0.004378 C = 0.004066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.060757 B = 6393.727441 C = 6885.377460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.275 3.725 3 H 0.024 0.976 4 C -0.538 4.538 5 H 0.053 0.947 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.273 1.273 12 N -0.994 5.994 13 C 0.109 3.891 14 S 2.791 3.209 15 O -1.015 7.015 16 O -1.009 7.009 17 N -1.088 6.088 18 C 0.191 3.809 19 H 0.075 0.925 20 C -0.138 4.138 21 C -0.113 4.113 22 C -0.137 4.137 23 C -0.109 4.109 24 C -0.113 4.113 25 C -0.088 4.088 26 C -0.103 4.103 27 C 0.111 3.889 28 H 0.091 0.909 29 O -0.558 6.558 30 H 0.067 0.933 31 H 0.036 0.964 32 H 0.041 0.959 33 H 0.264 0.736 34 H 0.039 0.961 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.423 0.577 38 H 0.101 0.899 39 H 0.135 0.865 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.102 0.898 43 H 0.112 0.888 44 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.952 6.494 -18.269 20.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.171 3.829 3 H 0.042 0.958 4 C -0.578 4.578 5 H 0.071 0.929 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.836 5.836 13 C -0.037 4.037 14 S 2.800 3.200 15 O -0.999 6.999 16 O -0.992 6.992 17 N -0.849 5.849 18 C 0.083 3.917 19 H 0.094 0.906 20 C -0.140 4.140 21 C -0.132 4.132 22 C -0.155 4.155 23 C -0.126 4.126 24 C -0.131 4.131 25 C -0.089 4.089 26 C -0.140 4.140 27 C 0.049 3.951 28 H 0.109 0.891 29 O -0.366 6.366 30 H 0.086 0.914 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.057 0.943 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.258 0.742 38 H 0.119 0.881 39 H 0.153 0.847 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.120 0.880 43 H 0.130 0.870 44 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -5.551 6.555 -17.584 19.570 hybrid contribution -0.059 -0.443 0.878 0.985 sum -5.610 6.112 -16.706 18.653 Atomic orbital electron populations 1.21920 0.96726 1.00212 1.00387 1.18407 0.92279 0.91156 0.81107 0.95803 1.21666 1.31575 1.12946 0.91567 0.92856 1.25595 0.95210 0.95701 1.01504 1.69970 1.37259 1.23622 1.24262 0.85577 0.78319 0.78577 0.79574 1.19654 1.20987 1.19820 1.57544 1.69940 1.21026 1.35124 1.21269 1.01488 0.80309 1.00640 1.01366 0.73591 0.72520 0.72481 1.93503 1.70645 1.60790 1.74999 1.93539 1.75116 1.56878 1.73664 1.55416 1.55802 1.49836 1.23842 1.20210 0.88741 0.83617 0.99123 0.90647 1.20880 0.98868 0.96036 0.98208 1.21147 0.96898 0.95264 0.99928 1.21447 1.01046 0.95194 0.97764 1.21449 0.95799 1.00744 0.94657 1.20963 0.98190 0.92942 1.01003 1.20790 0.97725 0.95687 0.94649 1.21817 0.98768 0.94970 0.98414 1.22491 0.94653 0.83444 0.94464 0.89094 1.86515 1.53615 1.25643 1.70828 0.91443 0.94487 0.94004 0.92628 0.94270 0.90327 0.90618 0.74154 0.88062 0.84732 0.82681 0.82834 0.88002 0.86992 0.74861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 8.84 71.98 0.64 -5.37 16 2 C 0.27 13.75 1.95 44.25 0.09 13.84 16 3 H 0.02 1.36 6.72 -2.38 -0.02 1.35 16 4 C -0.54 -29.79 8.37 25.60 0.21 -29.58 16 5 H 0.05 2.97 7.65 -2.91 -0.02 2.95 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -51.44 11.32 21.45 0.24 -51.20 16 8 Si 0.95 43.99 29.54 68.60 2.03 46.02 16 9 H -0.27 -12.40 7.11 99.48 0.71 -11.69 16 10 H -0.28 -13.04 7.11 99.48 0.71 -12.34 16 11 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 12 N -0.99 -42.96 3.12 -520.42 -1.62 -44.59 16 13 C 0.11 4.02 9.53 127.77 1.22 5.24 16 14 S 2.79 116.74 6.01 -56.49 -0.34 116.40 16 15 O -1.02 -44.81 17.21 -128.00 -2.20 -47.01 16 16 O -1.01 -49.56 15.48 -128.00 -1.98 -51.54 16 17 N -1.09 -34.96 5.05 -169.71 -0.86 -35.82 16 18 C 0.19 5.84 3.37 44.92 0.15 5.99 16 19 H 0.08 2.77 5.64 -2.39 -0.01 2.75 16 20 C -0.14 -4.17 5.77 -19.54 -0.11 -4.29 16 21 C -0.11 -3.82 10.01 22.44 0.22 -3.59 16 22 C -0.14 -3.59 10.07 22.38 0.23 -3.36 16 23 C -0.11 -2.16 10.05 22.24 0.22 -1.94 16 24 C -0.11 -2.11 10.04 22.30 0.22 -1.89 16 25 C -0.09 -1.95 6.15 -19.54 -0.12 -2.07 16 26 C -0.10 -1.59 6.51 30.52 0.20 -1.39 16 27 C 0.11 2.27 4.32 31.51 0.14 2.40 16 28 H 0.09 1.70 8.14 -2.38 -0.02 1.68 16 29 O -0.56 -10.30 12.45 -148.98 -1.85 -12.16 16 30 H 0.07 3.40 6.07 -2.39 -0.01 3.39 16 31 H 0.04 1.44 6.83 -2.39 -0.02 1.42 16 32 H 0.04 1.78 6.66 -2.39 -0.02 1.77 16 33 H 0.26 14.12 8.31 -92.70 -0.77 13.35 16 34 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 2.77 6.43 -2.39 -0.02 2.75 16 36 H 0.08 2.38 7.79 -2.38 -0.02 2.36 16 37 H 0.42 11.54 8.51 -96.75 -0.82 10.72 16 38 H 0.10 4.09 7.12 -2.92 -0.02 4.07 16 39 H 0.13 3.06 8.06 -2.91 -0.02 3.04 16 40 H 0.16 2.01 8.06 -2.91 -0.02 1.98 16 41 H 0.15 1.76 8.06 -2.91 -0.02 1.74 16 42 H 0.10 1.38 8.10 -2.39 -0.02 1.36 16 43 H 0.11 1.06 8.14 -2.39 -0.02 1.04 16 44 H 0.40 3.19 9.11 -74.06 -0.67 2.51 16 Total: -1.00 -74.72 365.31 -3.28 -78.01 By element: Atomic # 1 Polarization: 26.80 SS G_CDS: -0.45 Total: 26.35 kcal Atomic # 6 Polarization: -28.21 SS G_CDS: 3.75 Total: -24.45 kcal Atomic # 7 Polarization: -129.37 SS G_CDS: -2.24 Total: -131.60 kcal Atomic # 8 Polarization: -104.68 SS G_CDS: -6.04 Total: -110.72 kcal Atomic # 14 Polarization: 43.99 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 116.74 SS G_CDS: -0.34 Total: 116.40 kcal Total: -74.72 -3.28 -78.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000282974661.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.421 kcal (2) G-P(sol) polarization free energy of solvation -74.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.006 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds