Wall clock time and date at job start Sat Apr 11 2020 05:57:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47115 * 2 1 4 4 C 1.50703 * 109.46684 * 119.99630 * 2 1 3 5 5 H 1.08000 * 119.99669 * 120.00216 * 4 2 1 6 6 C 1.37875 * 119.99933 * 299.99921 * 4 2 1 7 7 N 1.31519 * 120.00086 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00344 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47081 * 89.99962 * 8 6 4 10 10 H 1.48498 * 109.47098 * 210.00410 * 8 6 4 11 11 H 1.48498 * 109.46799 * 330.00128 * 8 6 4 12 12 N 1.46499 * 109.47007 * 239.99551 * 2 1 3 13 13 C 1.46496 * 120.00301 * 299.99636 * 12 2 1 14 14 S 1.65603 * 119.99684 * 120.00529 * 12 2 1 15 15 O 1.42092 * 106.40254 * 336.45544 * 14 12 2 16 16 O 1.42102 * 106.39894 * 203.53630 * 14 12 2 17 17 N 1.65597 * 107.21924 * 89.99672 * 14 12 2 18 18 C 1.46501 * 120.00055 * 64.99932 * 17 14 12 19 19 H 1.09002 * 109.69524 * 334.43635 * 18 17 14 20 20 C 1.53408 * 109.69891 * 95.00029 * 18 17 14 21 21 O 1.42834 * 108.37726 * 184.41789 * 20 18 17 22 22 C 1.35838 * 117.86526 * 310.83487 * 21 20 18 23 23 C 1.39148 * 118.49944 * 197.00158 * 22 21 20 24 24 C 1.37967 * 120.21389 * 180.51590 * 23 22 21 25 25 C 1.38291 * 119.95898 * 359.47806 * 24 23 22 26 26 C 1.38104 * 119.98072 * 0.52991 * 25 24 23 27 27 C 1.38373 * 121.80553 * 17.18343 * 22 21 20 28 28 C 1.50771 * 121.40443 * 359.54583 * 27 22 21 29 29 H 1.09007 * 109.47050 * 60.00138 * 1 2 3 30 30 H 1.08999 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47370 * 300.00746 * 1 2 3 32 32 H 0.97001 * 120.00545 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.47519 * 270.00755 * 13 12 2 34 34 H 1.09003 * 109.46935 * 30.00580 * 13 12 2 35 35 H 1.08996 * 109.46986 * 150.00044 * 13 12 2 36 36 H 0.96997 * 120.00184 * 244.99718 * 17 14 12 37 37 H 1.08994 * 109.68436 * 64.69593 * 20 18 17 38 38 H 1.08994 * 109.68230 * 304.13860 * 20 18 17 39 39 H 1.08002 * 119.88847 * 0.22882 * 23 22 21 40 40 H 1.07998 * 120.01602 * 179.78192 * 24 23 22 41 41 H 1.07998 * 120.01050 * 180.20303 * 25 24 23 42 42 H 1.08007 * 119.83803 * 179.67142 * 26 25 24 43 43 H 1.09002 * 109.43633 * 257.74508 * 28 27 22 44 44 H 1.08999 * 109.40351 * 137.85686 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 2.1378 -0.8588 3.5567 8 14 0.6246 1.2793 2.6541 9 1 -0.8029 0.8729 2.6997 10 1 0.9758 1.9954 3.9067 11 1 0.8469 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 16 2.9705 0.1140 -2.2862 15 8 2.6904 1.4971 -2.1193 16 8 2.8228 -0.5648 -3.5258 17 7 4.5437 -0.1043 -1.8178 18 6 5.1357 -1.4442 -1.8413 19 1 4.3512 -2.1943 -1.7409 20 6 5.8866 -1.6548 -3.1623 21 8 6.3632 -3.0007 -3.1999 22 6 7.0305 -3.4685 -2.1131 23 6 7.8028 -4.6176 -2.2521 24 6 8.4869 -5.1296 -1.1688 25 6 8.4143 -4.4938 0.0571 26 6 7.6485 -3.3533 0.1987 27 6 6.9567 -2.8367 -0.8843 28 6 6.1365 -1.5863 -0.6918 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.9031 -0.5276 4.4377 33 1 2.4157 -2.7377 -0.9714 34 1 0.6904 -2.3003 -0.9845 35 1 1.6238 -2.2853 -2.5000 36 1 5.0734 0.6548 -1.5281 37 1 6.7289 -0.9654 -3.2198 38 1 5.2115 -1.4809 -4.0001 39 1 7.8633 -5.1128 -3.2100 40 1 9.0825 -6.0237 -1.2795 41 1 8.9520 -4.8921 0.9048 42 1 7.5892 -2.8616 1.1585 43 1 6.7962 -0.7187 -0.6758 44 1 5.5970 -1.6491 0.2532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283067841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:40 Heat of formation + Delta-G solvation = -78.848166 kcal Electronic energy + Delta-G solvation = -28878.690714 eV Core-core repulsion = 24923.396024 eV Total energy + Delta-G solvation = -3955.294690 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.74146 -37.65371 -36.91627 -36.50760 -35.88006 -35.49041 -32.59033 -32.35893 -30.33416 -30.09254 -29.02929 -25.89123 -25.77909 -25.06774 -23.35833 -22.45299 -21.04894 -20.27044 -19.06052 -17.87548 -17.56269 -17.11233 -16.88413 -16.48725 -15.85752 -15.69998 -15.40516 -14.84427 -14.51400 -14.34657 -13.87631 -13.72539 -13.59332 -13.37353 -13.25496 -13.07649 -12.84799 -12.37877 -12.21115 -12.08445 -11.97414 -11.85451 -11.74709 -11.57208 -11.50206 -11.45360 -11.29674 -11.11617 -10.80698 -10.72637 -10.52565 -10.19737 -9.68701 -9.51903 -9.37830 -8.82235 -8.72032 -8.20183 -8.17384 -6.22339 -4.23781 1.00567 1.27333 1.39362 3.08139 3.18661 3.31643 3.33026 3.37143 3.71838 3.89097 4.27945 4.52439 4.57415 4.64571 4.80244 4.85384 5.00618 5.06561 5.08899 5.29759 5.34580 5.37269 5.46297 5.52248 5.59501 5.71739 5.94608 6.01679 6.04711 6.08948 6.13223 6.21178 6.24379 6.33716 6.44140 6.47649 6.49482 6.50810 6.73038 6.78533 7.01630 7.24550 7.30834 7.41328 7.56278 8.36410 8.80174 9.38563 10.89818 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.004338 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.627405 B = 6453.396679 C = 7906.641569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.239 3.761 3 H 0.057 0.943 4 C -0.527 4.527 5 H 0.082 0.918 6 C 0.077 3.923 7 N -0.893 5.893 8 Si 0.876 3.124 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.262 1.262 12 N -0.983 5.983 13 C 0.095 3.905 14 S 2.783 3.217 15 O -0.980 6.980 16 O -0.990 6.990 17 N -1.116 6.116 18 C 0.128 3.872 19 H 0.099 0.901 20 C 0.045 3.955 21 O -0.310 6.310 22 C 0.127 3.873 23 C -0.150 4.150 24 C -0.091 4.091 25 C -0.153 4.153 26 C -0.079 4.079 27 C -0.151 4.151 28 C -0.086 4.086 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.266 0.734 33 H 0.048 0.952 34 H 0.078 0.922 35 H 0.065 0.935 36 H 0.415 0.585 37 H 0.068 0.932 38 H 0.120 0.880 39 H 0.128 0.872 40 H 0.126 0.874 41 H 0.123 0.877 42 H 0.128 0.872 43 H 0.084 0.916 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.260 -4.668 -9.345 14.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.134 3.866 3 H 0.075 0.925 4 C -0.566 4.566 5 H 0.100 0.900 6 C -0.127 4.127 7 N -0.530 5.530 8 Si 0.706 3.294 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.186 1.186 12 N -0.825 5.825 13 C -0.051 4.051 14 S 2.791 3.209 15 O -0.964 6.964 16 O -0.974 6.974 17 N -0.875 5.875 18 C 0.020 3.980 19 H 0.117 0.883 20 C -0.032 4.032 21 O -0.223 6.223 22 C 0.082 3.918 23 C -0.169 4.169 24 C -0.110 4.110 25 C -0.171 4.171 26 C -0.097 4.097 27 C -0.152 4.152 28 C -0.124 4.124 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.084 0.916 36 H 0.249 0.751 37 H 0.086 0.914 38 H 0.138 0.862 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.141 0.859 42 H 0.146 0.854 43 H 0.102 0.898 44 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 9.803 -4.431 -10.170 14.804 hybrid contribution -0.310 1.009 1.124 1.542 sum 9.493 -3.421 -9.046 13.552 Atomic orbital electron populations 1.22436 0.98826 1.01385 0.99292 1.19101 0.91003 0.93340 0.83127 0.92543 1.21184 1.32823 1.14322 0.88231 0.89978 1.24884 0.95526 0.96507 0.95753 1.69868 1.45073 1.40061 0.97983 0.87032 0.80877 0.83957 0.77559 1.20283 1.22156 1.18644 1.57397 1.64534 1.21678 1.38856 1.21379 1.02311 0.81246 1.00164 1.01827 0.72546 0.73072 0.73424 1.93598 1.83541 1.32396 1.86901 1.93559 1.85871 1.76228 1.41719 1.56046 1.32386 1.14111 1.84931 1.21222 0.97061 0.84699 0.95048 0.88281 1.23628 0.98820 0.81084 0.99686 1.86037 1.69331 1.29885 1.37060 1.18789 0.92730 0.94455 0.85871 1.20562 0.99256 0.96921 1.00170 1.20903 0.98428 0.99274 0.92351 1.21021 1.01517 0.96842 0.97762 1.20977 0.95183 0.95631 0.97928 1.19832 1.02636 0.99644 0.93128 1.20834 0.96398 0.95061 1.00122 0.94624 0.92170 0.93200 0.92434 0.93379 0.90332 0.91594 0.75101 0.91377 0.86237 0.85370 0.85629 0.85924 0.85447 0.89762 0.87879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.65 37.16 0.32 -3.03 16 2 C 0.24 5.32 2.21 -69.08 -0.15 5.17 16 3 H 0.06 1.33 5.97 -51.93 -0.31 1.02 16 4 C -0.53 -13.31 8.95 -34.44 -0.31 -13.62 16 5 H 0.08 2.21 7.89 -52.49 -0.41 1.80 16 6 C 0.08 2.05 5.45 -17.82 -0.10 1.95 16 7 N -0.89 -25.35 13.96 55.43 0.77 -24.58 16 8 Si 0.88 20.72 24.37 -169.99 -4.14 16.57 16 9 H -0.28 -6.35 6.87 56.52 0.39 -5.96 16 10 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 11 H -0.26 -6.06 6.53 56.52 0.37 -5.69 16 12 N -0.98 -18.72 3.12 -115.86 -0.36 -19.08 16 13 C 0.10 1.59 9.33 59.84 0.56 2.15 16 14 S 2.78 49.35 6.06 -107.50 -0.65 48.70 16 15 O -0.98 -20.18 16.70 -57.17 -0.95 -21.13 16 16 O -0.99 -18.16 16.00 -57.17 -0.92 -19.07 16 17 N -1.12 -15.99 5.56 -4.68 -0.03 -16.02 16 18 C 0.13 1.76 2.91 -67.68 -0.20 1.57 16 19 H 0.10 1.46 6.63 -51.93 -0.34 1.12 16 20 C 0.04 0.57 6.65 37.37 0.25 0.82 16 21 O -0.31 -4.30 10.27 -19.23 -0.20 -4.50 16 22 C 0.13 1.70 6.47 -39.19 -0.25 1.44 16 23 C -0.15 -1.76 9.94 -39.34 -0.39 -2.15 16 24 C -0.09 -0.94 10.04 -39.66 -0.40 -1.34 16 25 C -0.15 -1.64 10.04 -39.61 -0.40 -2.04 16 26 C -0.08 -0.96 9.67 -39.53 -0.38 -1.34 16 27 C -0.15 -1.99 5.75 -104.44 -0.60 -2.59 16 28 C -0.09 -1.12 5.41 -27.81 -0.15 -1.27 16 29 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.17 6.66 -51.93 -0.35 0.83 16 31 H 0.05 1.08 3.27 -51.93 -0.17 0.91 16 32 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 33 H 0.05 0.78 7.40 -51.93 -0.38 0.39 16 34 H 0.08 1.29 6.43 -51.93 -0.33 0.96 16 35 H 0.07 0.99 7.02 -51.93 -0.36 0.63 16 36 H 0.42 5.09 8.81 -34.47 -0.30 4.79 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.12 1.54 7.64 -51.93 -0.40 1.14 16 39 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.52 16 41 H 0.12 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.13 1.41 8.06 -52.48 -0.42 0.99 16 43 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 44 H 0.10 1.51 8.14 -51.93 -0.42 1.08 16 LS Contribution 358.81 15.07 5.41 5.41 Total: -1.00 -31.43 358.81 -9.20 -40.63 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -5.93 Total: 7.35 kcal Atomic # 6 Polarization: -12.08 SS G_CDS: -2.20 Total: -14.28 kcal Atomic # 7 Polarization: -60.06 SS G_CDS: 0.39 Total: -59.67 kcal Atomic # 8 Polarization: -42.64 SS G_CDS: -2.07 Total: -44.70 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.14 Total: 16.57 kcal Atomic # 16 Polarization: 49.35 SS G_CDS: -0.65 Total: 48.70 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.43 -9.20 -40.63 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283067841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.219 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds