Wall clock time and date at job start Sat Apr 11 2020 05:57:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47115 * 2 1 4 4 C 1.50703 * 109.46684 * 119.99630 * 2 1 3 5 5 H 1.08000 * 119.99669 * 120.00216 * 4 2 1 6 6 C 1.37875 * 119.99933 * 299.99921 * 4 2 1 7 7 N 1.31519 * 120.00086 * 180.02562 * 6 4 2 8 8 Si 1.86803 * 120.00344 * 0.02562 * 6 4 2 9 9 H 1.48494 * 109.47081 * 89.99962 * 8 6 4 10 10 H 1.48498 * 109.47098 * 210.00410 * 8 6 4 11 11 H 1.48498 * 109.46799 * 330.00128 * 8 6 4 12 12 N 1.46499 * 109.47007 * 239.99551 * 2 1 3 13 13 C 1.46496 * 120.00301 * 299.99636 * 12 2 1 14 14 S 1.65603 * 119.99684 * 120.00529 * 12 2 1 15 15 O 1.42092 * 106.40254 * 336.45544 * 14 12 2 16 16 O 1.42102 * 106.39894 * 203.53630 * 14 12 2 17 17 N 1.65597 * 107.21924 * 89.99672 * 14 12 2 18 18 C 1.46501 * 120.00055 * 64.99932 * 17 14 12 19 19 H 1.09002 * 109.69524 * 334.43635 * 18 17 14 20 20 C 1.53408 * 109.69891 * 95.00029 * 18 17 14 21 21 O 1.42834 * 108.37726 * 184.41789 * 20 18 17 22 22 C 1.35838 * 117.86526 * 310.83487 * 21 20 18 23 23 C 1.39148 * 118.49944 * 197.00158 * 22 21 20 24 24 C 1.37967 * 120.21389 * 180.51590 * 23 22 21 25 25 C 1.38291 * 119.95898 * 359.47806 * 24 23 22 26 26 C 1.38104 * 119.98072 * 0.52991 * 25 24 23 27 27 C 1.38373 * 121.80553 * 17.18343 * 22 21 20 28 28 C 1.50771 * 121.40443 * 359.54583 * 27 22 21 29 29 H 1.09007 * 109.47050 * 60.00138 * 1 2 3 30 30 H 1.08999 * 109.47115 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47370 * 300.00746 * 1 2 3 32 32 H 0.97001 * 120.00545 * 180.02562 * 7 6 4 33 33 H 1.08993 * 109.47519 * 270.00755 * 13 12 2 34 34 H 1.09003 * 109.46935 * 30.00580 * 13 12 2 35 35 H 1.08996 * 109.46986 * 150.00044 * 13 12 2 36 36 H 0.96997 * 120.00184 * 244.99718 * 17 14 12 37 37 H 1.08994 * 109.68436 * 64.69593 * 20 18 17 38 38 H 1.08994 * 109.68230 * 304.13860 * 20 18 17 39 39 H 1.08002 * 119.88847 * 0.22882 * 23 22 21 40 40 H 1.07998 * 120.01602 * 179.78192 * 24 23 22 41 41 H 1.07998 * 120.01050 * 180.20303 * 25 24 23 42 42 H 1.08007 * 119.83803 * 179.67142 * 26 25 24 43 43 H 1.09002 * 109.43633 * 257.74508 * 28 27 22 44 44 H 1.08999 * 109.40351 * 137.85686 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0322 -0.7104 1.2306 5 1 2.6531 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4827 7 7 2.1378 -0.8588 3.5567 8 14 0.6246 1.2793 2.6541 9 1 -0.8029 0.8729 2.6997 10 1 0.9758 1.9954 3.9067 11 1 0.8469 2.1766 1.4919 12 7 2.0183 -0.6907 -1.1961 13 6 1.6645 -2.0933 -1.4279 14 16 2.9705 0.1140 -2.2862 15 8 2.6904 1.4971 -2.1193 16 8 2.8228 -0.5648 -3.5258 17 7 4.5437 -0.1043 -1.8178 18 6 5.1357 -1.4442 -1.8413 19 1 4.3512 -2.1943 -1.7409 20 6 5.8866 -1.6548 -3.1623 21 8 6.3632 -3.0007 -3.1999 22 6 7.0305 -3.4685 -2.1131 23 6 7.8028 -4.6176 -2.2521 24 6 8.4869 -5.1296 -1.1688 25 6 8.4143 -4.4938 0.0571 26 6 7.6485 -3.3533 0.1987 27 6 6.9567 -2.8367 -0.8843 28 6 6.1365 -1.5863 -0.6918 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5140 0.8899 32 1 1.9031 -0.5276 4.4377 33 1 2.4157 -2.7377 -0.9714 34 1 0.6904 -2.3003 -0.9845 35 1 1.6238 -2.2853 -2.5000 36 1 5.0734 0.6548 -1.5281 37 1 6.7289 -0.9654 -3.2198 38 1 5.2115 -1.4809 -4.0001 39 1 7.8633 -5.1128 -3.2100 40 1 9.0825 -6.0237 -1.2795 41 1 8.9520 -4.8921 0.9048 42 1 7.5892 -2.8616 1.1585 43 1 6.7962 -0.7187 -0.6758 44 1 5.5970 -1.6491 0.2532 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283067841.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:57:39 Heat of formation + Delta-G solvation = -101.528687 kcal Electronic energy + Delta-G solvation = -28879.674215 eV Core-core repulsion = 24923.396024 eV Total energy + Delta-G solvation = -3956.278191 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 340.129 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.72034 -38.65235 -38.37557 -38.11791 -37.02361 -36.99936 -34.52796 -33.37702 -31.81881 -31.24645 -30.07488 -27.39802 -26.93639 -26.79197 -24.37012 -23.37858 -22.74285 -21.33038 -20.45223 -19.12968 -18.84578 -18.61127 -18.33742 -17.92176 -17.22324 -16.85857 -16.67358 -16.20659 -15.62054 -15.46940 -15.29525 -15.08471 -14.83670 -14.61998 -14.48753 -14.23938 -14.18525 -14.03918 -13.86590 -13.58796 -13.26890 -13.20063 -13.09738 -13.00204 -12.89395 -12.78585 -12.55057 -12.44199 -12.19293 -12.02418 -11.75365 -11.73498 -11.47471 -11.32795 -10.75382 -10.61725 -9.80406 -9.72738 -9.11861 -8.28454 -6.31931 -0.42349 0.37454 0.47972 1.31273 1.39994 1.46863 1.76703 2.29341 2.31833 2.50801 2.81481 3.06357 3.29083 3.46106 3.53496 3.77200 3.80743 3.95972 3.99240 4.24534 4.33339 4.37218 4.44316 4.48896 4.56551 4.62227 4.63951 4.67258 4.72633 4.74817 4.85627 4.96135 4.99395 5.08025 5.11495 5.15724 5.35739 5.45982 5.54226 5.55240 5.62326 5.75999 5.87129 6.02574 6.34494 6.44409 6.73168 7.33256 8.86634 Molecular weight = 340.13amu Principal moments of inertia in cm(-1) A = 0.012802 B = 0.004338 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2186.627405 B = 6453.396679 C = 7906.641569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.240 3.760 3 H 0.047 0.953 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.028 3.972 7 N -0.936 5.936 8 Si 0.924 3.076 9 H -0.263 1.263 10 H -0.298 1.298 11 H -0.253 1.253 12 N -0.989 5.989 13 C 0.091 3.909 14 S 2.798 3.202 15 O -1.007 7.007 16 O -0.994 6.994 17 N -1.106 6.106 18 C 0.127 3.873 19 H 0.086 0.914 20 C 0.047 3.953 21 O -0.321 6.321 22 C 0.104 3.896 23 C -0.157 4.157 24 C -0.087 4.087 25 C -0.153 4.153 26 C -0.095 4.095 27 C -0.167 4.167 28 C -0.080 4.080 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.266 0.734 33 H 0.046 0.954 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.426 0.574 37 H 0.087 0.913 38 H 0.118 0.882 39 H 0.142 0.858 40 H 0.158 0.842 41 H 0.147 0.853 42 H 0.130 0.870 43 H 0.100 0.900 44 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.809 -4.977 -10.356 15.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.134 3.866 3 H 0.064 0.936 4 C -0.553 4.553 5 H 0.074 0.926 6 C -0.171 4.171 7 N -0.576 5.576 8 Si 0.751 3.249 9 H -0.189 1.189 10 H -0.226 1.226 11 H -0.177 1.177 12 N -0.830 5.830 13 C -0.054 4.054 14 S 2.807 3.193 15 O -0.991 6.991 16 O -0.978 6.978 17 N -0.868 5.868 18 C 0.019 3.981 19 H 0.104 0.896 20 C -0.029 4.029 21 O -0.234 6.234 22 C 0.060 3.940 23 C -0.176 4.176 24 C -0.104 4.104 25 C -0.171 4.171 26 C -0.113 4.113 27 C -0.168 4.168 28 C -0.118 4.118 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.075 0.925 33 H 0.065 0.935 34 H 0.099 0.901 35 H 0.103 0.897 36 H 0.262 0.738 37 H 0.105 0.895 38 H 0.136 0.864 39 H 0.160 0.840 40 H 0.176 0.824 41 H 0.164 0.836 42 H 0.148 0.852 43 H 0.118 0.882 44 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.343 -4.743 -11.204 15.969 hybrid contribution -0.356 0.983 1.402 1.749 sum 9.987 -3.759 -9.802 14.490 Atomic orbital electron populations 1.22404 0.97378 1.02364 0.99971 1.18880 0.92166 0.92568 0.82939 0.93571 1.21337 1.31372 1.13108 0.89476 0.92624 1.25536 0.96925 0.99023 0.95614 1.69988 1.47136 1.41960 0.98487 0.86246 0.80052 0.81119 0.77444 1.18908 1.22580 1.17748 1.57374 1.65330 1.22492 1.37825 1.21515 1.02385 0.80076 1.01413 1.01267 0.72796 0.72145 0.73100 1.93559 1.84290 1.34024 1.87220 1.93551 1.86230 1.76156 1.41842 1.55724 1.31344 1.14994 1.84758 1.21268 0.96927 0.83691 0.96258 0.89605 1.23615 0.99354 0.81383 0.98589 1.86011 1.69694 1.30243 1.37458 1.19053 0.93741 0.95437 0.85795 1.20878 0.98909 0.96398 1.01410 1.21299 0.97739 0.99860 0.91525 1.21368 1.00781 0.96048 0.98892 1.21167 0.95731 0.96538 0.97838 1.19890 1.03344 0.99889 0.93697 1.20739 0.96322 0.96185 0.98573 0.92481 0.91175 0.93906 0.92513 0.93518 0.90069 0.89717 0.73810 0.89459 0.86396 0.83983 0.82423 0.83554 0.85190 0.88158 0.90172 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.48 8.65 71.98 0.62 -5.86 16 2 C 0.24 10.52 2.21 44.25 0.10 10.62 16 3 H 0.05 2.14 5.97 -2.39 -0.01 2.13 16 4 C -0.51 -26.19 8.95 25.60 0.23 -25.96 16 5 H 0.06 3.08 7.89 -2.91 -0.02 3.06 16 6 C 0.03 1.51 5.45 84.65 0.46 1.97 16 7 N -0.94 -54.17 13.96 21.45 0.30 -53.87 16 8 Si 0.92 42.24 24.37 68.60 1.67 43.92 16 9 H -0.26 -11.42 6.87 99.48 0.68 -10.73 16 10 H -0.30 -13.72 7.11 99.48 0.71 -13.02 16 11 H -0.25 -11.14 6.53 99.48 0.65 -10.50 16 12 N -0.99 -37.02 3.12 -520.47 -1.62 -38.65 16 13 C 0.09 2.99 9.33 127.77 1.19 4.18 16 14 S 2.80 97.02 6.06 -56.49 -0.34 96.68 16 15 O -1.01 -40.58 16.70 -128.00 -2.14 -42.71 16 16 O -0.99 -35.25 16.00 -128.00 -2.05 -37.29 16 17 N -1.11 -31.17 5.56 -168.71 -0.94 -32.11 16 18 C 0.13 3.46 2.91 45.15 0.13 3.59 16 19 H 0.09 2.57 6.63 -2.39 -0.02 2.55 16 20 C 0.05 1.17 6.65 72.12 0.48 1.65 16 21 O -0.32 -8.67 10.27 -91.73 -0.94 -9.61 16 22 C 0.10 2.73 6.47 22.52 0.15 2.87 16 23 C -0.16 -3.41 9.94 22.42 0.22 -3.19 16 24 C -0.09 -1.56 10.04 22.22 0.22 -1.33 16 25 C -0.15 -2.97 10.04 22.25 0.22 -2.75 16 26 C -0.09 -2.23 9.67 22.30 0.22 -2.02 16 27 C -0.17 -4.35 5.75 -19.75 -0.11 -4.46 16 28 C -0.08 -2.10 5.41 29.89 0.16 -1.94 16 29 H 0.06 2.01 8.14 -2.38 -0.02 2.00 16 30 H 0.07 2.62 6.66 -2.39 -0.02 2.60 16 31 H 0.04 1.76 3.27 -2.38 -0.01 1.76 16 32 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 33 H 0.05 1.52 7.40 -2.39 -0.02 1.50 16 34 H 0.08 2.59 6.43 -2.39 -0.02 2.57 16 35 H 0.08 2.44 7.02 -2.39 -0.02 2.42 16 36 H 0.43 10.17 8.81 -96.75 -0.85 9.31 16 37 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.12 2.92 7.64 -2.39 -0.02 2.90 16 39 H 0.14 2.59 8.06 -2.91 -0.02 2.57 16 40 H 0.16 1.78 8.06 -2.91 -0.02 1.76 16 41 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 42 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 43 H 0.10 2.23 8.11 -2.39 -0.02 2.21 16 44 H 0.08 2.45 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -66.56 358.81 -1.67 -68.22 By element: Atomic # 1 Polarization: 27.96 SS G_CDS: 0.10 Total: 28.06 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 4.29 Total: -22.63 kcal Atomic # 7 Polarization: -122.37 SS G_CDS: -2.26 Total: -124.63 kcal Atomic # 8 Polarization: -84.49 SS G_CDS: -5.13 Total: -89.62 kcal Atomic # 14 Polarization: 42.24 SS G_CDS: 1.67 Total: 43.92 kcal Atomic # 16 Polarization: 97.02 SS G_CDS: -0.34 Total: 96.68 kcal Total: -66.56 -1.67 -68.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283067841.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.305 kcal (2) G-P(sol) polarization free energy of solvation -66.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.529 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds